Wall clock time and date at job start Tue Mar 31 2020 15:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 119.99773 * 2 1 4 4 H 1.48499 * 109.46891 * 269.99530 * 3 2 1 5 5 H 1.48497 * 109.47066 * 29.99894 * 3 2 1 6 6 H 1.48502 * 109.46851 * 149.99906 * 3 2 1 7 7 C 1.38949 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99466 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.34767 * 119.99876 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00369 * 0.02562 * 10 9 7 12 12 C 1.50709 * 119.99879 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47067 * 180.02562 * 12 10 9 14 14 C 1.34775 * 119.99772 * 180.02562 * 13 12 10 15 15 O 1.21280 * 119.99953 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99925 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.46996 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.46998 * 180.02562 * 17 16 14 19 19 C 1.38265 * 119.97209 * 270.01978 * 18 17 16 20 20 C 1.38212 * 120.06111 * 180.02562 * 19 18 17 21 21 C 1.38324 * 120.01216 * 359.95565 * 20 19 18 22 22 Cl 1.73601 * 120.02683 * 180.29713 * 21 20 19 23 23 C 1.38555 * 119.94892 * 0.02568 * 21 20 19 24 24 F 1.35095 * 120.02786 * 180.02562 * 23 21 20 25 25 C 1.38189 * 119.97632 * 90.00436 * 18 17 16 26 26 H 0.97005 * 119.99956 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99693 * 0.02562 * 9 7 2 28 28 H 1.08999 * 109.46524 * 59.99888 * 12 10 9 29 29 H 1.08991 * 109.46826 * 300.00514 * 12 10 9 30 30 H 0.97001 * 120.00028 * 359.97438 * 13 12 10 31 31 H 1.08998 * 109.46643 * 60.00372 * 16 14 13 32 32 H 1.08997 * 109.47129 * 300.00151 * 16 14 13 33 33 H 1.09004 * 109.47159 * 59.99858 * 17 16 14 34 34 H 1.09006 * 109.47184 * 300.00103 * 17 16 14 35 35 H 1.08000 * 119.97259 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.99873 * 180.02562 * 20 19 18 37 37 H 1.08003 * 120.00788 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9972 -3.5578 0.0026 11 8 3.2101 -3.5578 0.0031 12 6 1.2437 -4.8630 0.0044 13 7 2.1957 -5.9764 0.0059 14 6 1.7465 -7.2471 0.0071 15 8 0.5541 -7.4687 0.0074 16 6 2.7258 -8.3926 0.0080 17 6 1.9608 -9.7176 0.0099 18 6 2.9401 -10.8630 0.0115 19 6 3.3892 -11.3895 -1.1855 20 6 4.2870 -12.4403 -1.1862 21 6 4.7378 -12.9659 0.0112 22 17 5.8713 -14.2808 0.0108 23 6 4.2883 -12.4385 1.2110 24 9 4.7280 -12.9503 2.3814 25 6 3.3887 -11.3862 1.2093 26 1 -0.4850 0.8401 -0.0004 27 1 0.3533 -2.3907 0.0016 28 1 0.6167 -4.9216 -0.8853 29 1 0.6174 -4.9196 0.8946 30 1 3.1494 -5.7992 0.0053 31 1 3.3524 -8.3340 0.8979 32 1 3.3524 -8.3356 -0.8820 33 1 1.3337 -9.7764 -0.8797 34 1 1.3344 -9.7742 0.9003 35 1 3.0383 -10.9792 -2.1209 36 1 4.6375 -12.8505 -2.1218 37 1 3.0373 -10.9745 2.1439 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599932577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:38 Heat of formation + Delta-G solvation = -116.442908 kcal Electronic energy + Delta-G solvation = -23432.409973 eV Core-core repulsion = 19342.374087 eV Total energy + Delta-G solvation = -4090.035886 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.33191 -40.06295 -39.41379 -38.17450 -37.04190 -34.56243 -34.11731 -33.71714 -31.43496 -31.21683 -30.16342 -27.76893 -25.22993 -24.11998 -23.43182 -21.70377 -20.16532 -19.58886 -18.15673 -17.96053 -17.19941 -17.15858 -16.76821 -16.14954 -15.73531 -15.70366 -15.43416 -14.74135 -14.55707 -14.39674 -14.17355 -14.01986 -13.72544 -13.53451 -13.21961 -13.07086 -12.67764 -12.51302 -12.23253 -11.93965 -11.73119 -11.66608 -11.58755 -11.34595 -11.25838 -11.15403 -10.48983 -10.35588 -9.84311 -9.67585 -9.43521 -9.01413 -8.87043 -8.68206 -8.14359 -6.55314 -3.97528 0.47783 0.62652 1.58201 2.73626 2.91821 3.08911 3.19406 3.23586 3.33425 3.63123 3.69497 4.07481 4.14414 4.28693 4.59362 4.68072 4.76227 4.82835 4.87646 5.00858 5.13107 5.14826 5.38690 5.40088 5.42251 5.54799 5.62923 5.85075 5.85926 5.90516 6.02379 6.04435 6.24644 6.60784 7.42346 7.72576 7.87870 8.35495 8.41446 9.00639 9.34925 9.82583 10.61428 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.031087 B = 0.001681 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.471107 B =16656.874324 C =16952.597973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.427 3.573 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.707 5.707 14 C 0.510 3.490 15 O -0.551 6.551 16 C -0.135 4.135 17 C -0.068 4.068 18 C -0.044 4.044 19 C -0.114 4.114 20 C -0.080 4.080 21 C -0.081 4.081 22 Cl -0.054 7.054 23 C 0.112 3.888 24 F -0.127 7.127 25 C -0.139 4.139 26 H 0.275 0.725 27 H 0.396 0.604 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.412 0.588 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.760 -24.731 -1.266 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.212 3.788 11 O -0.485 6.485 12 C -0.020 4.020 13 N -0.361 5.361 14 C 0.296 3.704 15 O -0.429 6.429 16 C -0.175 4.175 17 C -0.105 4.105 18 C -0.044 4.044 19 C -0.132 4.132 20 C -0.098 4.098 21 C -0.109 4.109 22 Cl -0.025 7.025 23 C 0.092 3.908 24 F -0.106 7.106 25 C -0.158 4.158 26 H 0.084 0.916 27 H 0.230 0.770 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.249 0.751 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.690 -24.813 -1.207 25.485 hybrid contribution 0.460 0.767 0.232 0.924 sum 6.150 -24.045 -0.975 24.838 Atomic orbital electron populations 1.69613 1.06020 1.28575 1.49182 1.25335 0.95677 0.99971 0.96723 0.85805 0.79232 0.80445 0.78509 1.20246 1.20772 1.19306 1.19733 0.93474 0.81994 1.48349 0.87657 1.41800 1.09493 1.04503 1.62490 1.19749 0.88301 0.85015 0.85717 1.90497 1.13712 1.86822 1.57460 1.20957 0.91915 0.85853 1.03232 1.45749 1.11668 1.04746 1.73934 1.20524 0.89634 0.83875 0.76348 1.90698 1.16868 1.84934 1.50446 1.21625 0.98406 0.92299 1.05181 1.20410 0.95369 0.89245 1.05502 1.19924 0.96224 0.96251 0.92014 1.21175 0.97266 0.96097 0.98653 1.20997 0.96515 0.95923 0.96400 1.21024 0.99601 0.96067 0.94184 1.98392 1.59106 1.46118 1.98893 1.17408 0.97554 0.95535 0.80329 1.91549 1.87895 1.85868 1.45253 1.21105 0.98214 0.96280 1.00213 0.91553 0.77027 0.89841 0.89854 0.75050 0.88520 0.88436 0.89221 0.89408 0.84045 0.83871 0.83550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.50 13.05 55.50 0.72 -22.78 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.23 29.55 -169.99 -5.02 15.20 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.31 -8.18 9.68 -14.93 -0.14 -8.33 16 8 H 0.11 2.93 7.16 -52.49 -0.38 2.56 16 9 N -0.55 -13.30 5.29 -10.96 -0.06 -13.36 16 10 C 0.43 9.48 7.85 -10.99 -0.09 9.40 16 11 O -0.60 -14.89 15.24 5.55 0.08 -14.80 16 12 C 0.11 1.89 6.15 -5.19 -0.03 1.86 16 13 N -0.71 -10.73 5.53 -61.47 -0.34 -11.07 16 14 C 0.51 6.92 7.83 -10.98 -0.09 6.83 16 15 O -0.55 -9.18 15.98 5.56 0.09 -9.09 16 16 C -0.14 -1.20 5.68 -27.88 -0.16 -1.36 16 17 C -0.07 -0.55 4.63 -27.88 -0.13 -0.68 16 18 C -0.04 -0.32 5.13 -104.63 -0.54 -0.86 16 19 C -0.11 -0.73 9.70 -39.58 -0.38 -1.12 16 20 C -0.08 -0.54 9.83 -39.56 -0.39 -0.92 16 21 C -0.08 -0.69 6.33 -39.43 -0.25 -0.94 16 22 Cl -0.05 -0.46 28.62 -51.86 -1.48 -1.94 16 23 C 0.11 1.01 7.28 -39.39 -0.29 0.73 16 24 F -0.13 -1.30 16.84 2.25 0.04 -1.26 16 25 C -0.14 -1.10 9.68 -39.52 -0.38 -1.48 16 26 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.40 9.23 7.90 -40.82 -0.32 8.91 16 28 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.41 6.12 7.44 -40.82 -0.30 5.81 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.75 8.04 -51.93 -0.42 0.33 16 34 H 0.09 0.76 8.04 -51.93 -0.42 0.35 16 35 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 350.32 15.07 5.28 5.28 Total: -1.00 -31.01 350.32 -7.58 -38.59 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -3.93 Total: 11.52 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -2.96 Total: 3.70 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.33 Total: -47.21 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.17 Total: -23.90 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.48 Total: -1.94 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.01 -7.58 -38.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599932577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.849 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds