Wall clock time and date at job start Tue Mar 31 2020 15:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 119.99773 * 2 1 4 4 H 1.48499 * 109.46891 * 269.99530 * 3 2 1 5 5 H 1.48497 * 109.47066 * 29.99894 * 3 2 1 6 6 H 1.48502 * 109.46851 * 149.99906 * 3 2 1 7 7 C 1.38949 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99466 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.34767 * 119.99876 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00369 * 0.02562 * 10 9 7 12 12 C 1.50709 * 119.99879 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47067 * 180.02562 * 12 10 9 14 14 C 1.34775 * 119.99772 * 180.02562 * 13 12 10 15 15 O 1.21280 * 119.99953 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99925 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.46996 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.46998 * 180.02562 * 17 16 14 19 19 C 1.38265 * 119.97209 * 270.01978 * 18 17 16 20 20 C 1.38212 * 120.06111 * 180.02562 * 19 18 17 21 21 C 1.38324 * 120.01216 * 359.95565 * 20 19 18 22 22 Cl 1.73601 * 120.02683 * 180.29713 * 21 20 19 23 23 C 1.38555 * 119.94892 * 0.02568 * 21 20 19 24 24 F 1.35095 * 120.02786 * 180.02562 * 23 21 20 25 25 C 1.38189 * 119.97632 * 90.00436 * 18 17 16 26 26 H 0.97005 * 119.99956 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99693 * 0.02562 * 9 7 2 28 28 H 1.08999 * 109.46524 * 59.99888 * 12 10 9 29 29 H 1.08991 * 109.46826 * 300.00514 * 12 10 9 30 30 H 0.97001 * 120.00028 * 359.97438 * 13 12 10 31 31 H 1.08998 * 109.46643 * 60.00372 * 16 14 13 32 32 H 1.08997 * 109.47129 * 300.00151 * 16 14 13 33 33 H 1.09004 * 109.47159 * 59.99858 * 17 16 14 34 34 H 1.09006 * 109.47184 * 300.00103 * 17 16 14 35 35 H 1.08000 * 119.97259 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.99873 * 180.02562 * 20 19 18 37 37 H 1.08003 * 120.00788 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9972 -3.5578 0.0026 11 8 3.2101 -3.5578 0.0031 12 6 1.2437 -4.8630 0.0044 13 7 2.1957 -5.9764 0.0059 14 6 1.7465 -7.2471 0.0071 15 8 0.5541 -7.4687 0.0074 16 6 2.7258 -8.3926 0.0080 17 6 1.9608 -9.7176 0.0099 18 6 2.9401 -10.8630 0.0115 19 6 3.3892 -11.3895 -1.1855 20 6 4.2870 -12.4403 -1.1862 21 6 4.7378 -12.9659 0.0112 22 17 5.8713 -14.2808 0.0108 23 6 4.2883 -12.4385 1.2110 24 9 4.7280 -12.9503 2.3814 25 6 3.3887 -11.3862 1.2093 26 1 -0.4850 0.8401 -0.0004 27 1 0.3533 -2.3907 0.0016 28 1 0.6167 -4.9216 -0.8853 29 1 0.6174 -4.9196 0.8946 30 1 3.1494 -5.7992 0.0053 31 1 3.3524 -8.3340 0.8979 32 1 3.3524 -8.3356 -0.8820 33 1 1.3337 -9.7764 -0.8797 34 1 1.3344 -9.7742 0.9003 35 1 3.0383 -10.9792 -2.1209 36 1 4.6375 -12.8505 -2.1218 37 1 3.0373 -10.9745 2.1439 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599932577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:37 Heat of formation + Delta-G solvation = -136.107566 kcal Electronic energy + Delta-G solvation = -23433.262696 eV Core-core repulsion = 19342.374087 eV Total energy + Delta-G solvation = -4090.888609 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.02675 -41.07023 -40.33910 -39.77353 -37.67269 -36.24800 -35.26645 -34.83195 -33.37037 -31.78967 -30.96174 -29.12235 -26.68160 -25.30123 -23.99883 -22.40434 -21.36259 -21.20729 -20.05074 -18.72399 -18.30562 -17.79858 -17.41006 -17.24115 -16.90540 -16.85908 -16.81582 -16.31219 -15.86272 -15.68082 -15.19678 -14.91071 -14.75802 -14.35181 -14.12869 -14.04744 -13.87148 -13.54886 -13.41401 -13.33306 -13.05185 -12.89544 -12.45468 -12.35700 -12.20964 -12.12721 -11.97249 -11.90065 -11.56598 -10.97273 -10.55043 -10.16320 -10.06591 -10.00430 -9.62813 -8.50915 -6.01058 -0.11673 0.07188 0.97320 1.36714 1.43357 1.55677 1.66121 1.92193 2.06841 2.31433 2.43947 3.02033 3.15123 3.16458 3.52653 3.66751 3.93020 4.05881 4.13484 4.19743 4.26111 4.32278 4.45808 4.47509 4.57198 4.73143 4.79086 4.87556 5.01384 5.07425 5.19810 5.34062 5.39415 5.46638 5.69406 5.92339 6.46966 6.58667 7.03998 7.22899 7.45420 7.95181 8.65832 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.031087 B = 0.001681 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.471107 B =16656.874324 C =16952.597973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.561 5.561 10 C 0.432 3.568 11 O -0.624 6.624 12 C 0.121 3.879 13 N -0.711 5.711 14 C 0.512 3.488 15 O -0.582 6.582 16 C -0.126 4.126 17 C -0.061 4.061 18 C -0.044 4.044 19 C -0.106 4.106 20 C -0.078 4.078 21 C -0.091 4.091 22 Cl -0.060 7.060 23 C 0.090 3.910 24 F -0.140 7.140 25 C -0.141 4.141 26 H 0.280 0.720 27 H 0.399 0.601 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.414 0.586 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -25.070 -2.074 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.219 3.781 11 O -0.513 6.513 12 C -0.008 4.008 13 N -0.365 5.365 14 C 0.300 3.700 15 O -0.462 6.462 16 C -0.166 4.166 17 C -0.098 4.098 18 C -0.044 4.044 19 C -0.124 4.124 20 C -0.096 4.096 21 C -0.118 4.118 22 Cl -0.031 7.031 23 C 0.070 3.930 24 F -0.119 7.119 25 C -0.160 4.160 26 H 0.089 0.911 27 H 0.233 0.767 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.252 0.748 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.183 0.817 36 H 0.182 0.818 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.969 -25.179 -2.015 25.955 hybrid contribution 0.362 0.796 0.465 0.991 sum 6.331 -24.383 -1.550 25.239 Atomic orbital electron populations 1.69678 1.06979 1.29604 1.49315 1.26120 0.96536 1.02672 0.95826 0.84874 0.77909 0.76546 0.78702 1.19556 1.19727 1.19480 1.19734 0.92966 0.83591 1.50380 0.89569 1.41861 1.09594 1.04675 1.63465 1.20499 0.88155 0.86008 0.83441 1.90473 1.15191 1.87577 1.58018 1.20752 0.91847 0.84057 1.04096 1.45818 1.11330 1.04794 1.74548 1.21296 0.89966 0.83972 0.74730 1.90689 1.18584 1.85242 1.51725 1.21669 0.97522 0.90354 1.07037 1.20317 0.95295 0.89005 1.05230 1.19852 0.96173 0.96153 0.92215 1.21461 0.96301 0.95405 0.99228 1.21265 0.96098 0.95679 0.96565 1.21233 0.99772 0.96147 0.94688 1.98387 1.59373 1.46462 1.98915 1.17636 0.98667 0.96496 0.80217 1.91511 1.88196 1.86168 1.45980 1.21223 0.97854 0.95951 1.00952 0.91096 0.76723 0.88842 0.89012 0.74752 0.86920 0.86153 0.89170 0.90179 0.81703 0.81793 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.94 13.05 21.66 0.28 -47.65 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 1.00 41.12 29.55 68.60 2.03 43.14 16 4 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.34 -18.26 9.68 84.04 0.81 -17.45 16 8 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.56 -27.47 5.29 -306.99 -1.62 -29.09 16 10 C 0.43 19.18 7.85 87.66 0.69 19.87 16 11 O -0.62 -31.16 15.24 -3.06 -0.05 -31.20 16 12 C 0.12 4.11 6.15 85.64 0.53 4.64 16 13 N -0.71 -20.53 5.53 -466.79 -2.58 -23.11 16 14 C 0.51 12.92 7.83 87.66 0.69 13.61 16 15 O -0.58 -18.56 15.98 -3.03 -0.05 -18.61 16 16 C -0.13 -1.91 5.68 29.85 0.17 -1.74 16 17 C -0.06 -0.85 4.63 29.85 0.14 -0.71 16 18 C -0.04 -0.54 5.13 -19.87 -0.10 -0.64 16 19 C -0.11 -1.05 9.70 22.27 0.22 -0.84 16 20 C -0.08 -0.86 9.83 22.28 0.22 -0.64 16 21 C -0.09 -1.42 6.33 22.37 0.14 -1.28 16 22 Cl -0.06 -0.98 28.62 -2.72 -0.08 -1.06 16 23 C 0.09 1.56 7.28 22.39 0.16 1.72 16 24 F -0.14 -2.86 16.84 44.97 0.76 -2.10 16 25 C -0.14 -2.03 9.68 22.31 0.22 -1.82 16 26 H 0.28 13.70 8.31 -92.70 -0.77 12.93 16 27 H 0.40 18.78 7.90 -92.71 -0.73 18.04 16 28 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 29 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.41 11.73 7.44 -92.71 -0.69 11.04 16 31 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.28 8.04 -2.39 -0.02 1.26 16 34 H 0.08 1.26 8.04 -2.38 -0.02 1.24 16 35 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 36 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 37 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -66.47 350.32 2.76 -63.72 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: -0.28 Total: 31.33 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 4.34 Total: 14.63 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -3.92 Total: -99.86 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.10 Total: -49.81 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.76 Total: -2.10 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -66.47 2.76 -63.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599932577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.391 kcal (2) G-P(sol) polarization free energy of solvation -66.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds