Wall clock time and date at job start Tue Mar 31 2020 15:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48500 * 109.47341 * 239.99664 * 3 2 1 5 5 H 1.48496 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46651 * 119.99846 * 3 2 1 7 7 C 1.38816 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99557 * 163.07518 * 7 2 1 9 9 N 1.36935 * 120.00109 * 343.07479 * 7 2 1 10 10 C 1.46934 * 120.62776 * 151.82327 * 9 7 2 11 11 C 1.53194 * 108.89214 * 126.34278 * 10 9 7 12 12 C 1.53350 * 109.14857 * 54.57312 * 11 10 9 13 13 C 1.53006 * 109.41355 * 178.67407 * 12 11 10 14 14 N 1.46501 * 109.47077 * 295.12943 * 13 12 11 15 15 C 1.34775 * 119.99550 * 180.02562 * 14 13 12 16 16 O 1.21639 * 120.00457 * 359.97438 * 15 14 13 17 17 C 1.47157 * 119.99854 * 180.02562 * 15 14 13 18 18 C 1.36045 * 123.46791 * 0.02562 * 17 15 14 19 19 S 1.70438 * 110.83279 * 180.02562 * 18 17 15 20 20 C 1.75501 * 92.45902 * 0.02562 * 19 18 17 21 21 C 1.32845 * 110.57688 * 359.71325 * 20 19 18 22 22 Cl 1.73601 * 123.46685 * 180.28073 * 21 20 19 23 23 C 1.53038 * 109.61172 * 298.71505 * 12 11 10 24 24 C 1.46917 * 120.63313 * 331.84348 * 9 7 2 25 25 H 0.96997 * 119.99488 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.58470 * 246.20071 * 10 9 7 27 27 H 1.09001 * 109.58650 * 6.48248 * 10 9 7 28 28 H 1.08992 * 109.49638 * 174.66086 * 11 10 9 29 29 H 1.09002 * 109.49602 * 294.75299 * 11 10 9 30 30 H 1.09005 * 109.42029 * 58.75446 * 12 11 10 31 31 H 1.08999 * 109.46966 * 55.13498 * 13 12 11 32 32 H 1.08999 * 109.46649 * 175.13268 * 13 12 11 33 33 H 0.96993 * 120.00351 * 0.02562 * 14 13 12 34 34 H 1.08008 * 124.58231 * 0.02562 * 18 17 15 35 35 H 1.08000 * 124.71336 * 180.02562 * 20 19 18 36 36 H 1.09007 * 109.49142 * 301.42123 * 23 12 11 37 37 H 1.08995 * 109.49863 * 181.32652 * 23 12 11 38 38 H 1.09003 * 109.58812 * 353.37838 * 24 9 7 39 39 H 1.09004 * 109.58911 * 113.65975 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7463 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3699 -2.3626 0.3442 10 6 1.8136 -3.6528 -0.2011 11 6 2.0696 -4.6199 0.9591 12 6 0.8116 -4.7022 1.8323 13 6 1.0493 -5.6921 2.9746 14 7 1.2322 -7.0376 2.4247 15 6 1.4566 -8.0784 3.2510 16 8 1.5078 -7.9006 4.4532 17 6 1.6408 -9.4299 2.6987 18 6 1.5991 -9.7086 1.3677 19 16 1.8512 -11.3709 1.0883 20 6 2.0177 -11.7109 2.8020 21 6 1.8892 -10.5966 3.5137 22 17 2.0029 -10.5482 5.2453 23 6 0.4972 -3.3210 2.4115 24 6 0.2260 -2.3410 1.2659 25 1 -0.4849 0.8401 -0.0004 26 1 1.0400 -4.0598 -0.8521 27 1 2.7330 -3.5126 -0.7696 28 1 2.3075 -5.6074 0.5638 29 1 2.9046 -4.2565 1.5581 30 1 -0.0285 -5.0418 1.2264 31 1 1.9424 -5.4010 3.5276 32 1 0.1894 -5.6871 3.6444 33 1 1.1917 -7.1794 1.4660 34 1 1.4292 -8.9755 0.5929 35 1 2.2043 -12.6892 3.2196 36 1 1.3470 -2.9701 2.9971 37 1 -0.3834 -3.3864 3.0506 38 1 0.0991 -1.3355 1.6674 39 1 -0.6777 -2.6386 0.7339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601232634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:48 Heat of formation + Delta-G solvation = 4.154240 kcal Electronic energy + Delta-G solvation = -22880.214254 eV Core-core repulsion = 19361.621029 eV Total energy + Delta-G solvation = -3518.593225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.05070 -38.08360 -37.36322 -36.13076 -34.97035 -32.91646 -31.01829 -30.19085 -29.63196 -26.96860 -25.26994 -23.93168 -22.34696 -21.63077 -20.97408 -19.64769 -19.08554 -18.55769 -17.38345 -16.71314 -15.64708 -15.39834 -15.24841 -14.79849 -14.20931 -13.92634 -13.75218 -13.65654 -13.53631 -13.33545 -13.27134 -13.10431 -12.36224 -12.32538 -11.89789 -11.88040 -11.72225 -11.35818 -11.01938 -10.98890 -10.72612 -10.53129 -10.27211 -10.23828 -10.00773 -9.85539 -9.56684 -9.45796 -9.41715 -9.04559 -8.74888 -8.47443 -6.68239 -5.80088 -3.22579 0.27533 0.83969 1.25407 1.44853 2.28704 3.10692 3.18709 3.37825 3.43776 3.45194 4.20010 4.48911 4.70603 4.82997 4.94938 5.09757 5.20293 5.34734 5.38415 5.40465 5.48158 5.59092 5.84041 5.92477 6.02611 6.12271 6.29711 6.38792 6.43914 6.58323 6.67078 6.74043 6.79122 6.95384 7.35292 7.45947 7.64765 7.78347 8.16396 8.44463 9.20558 9.83983 10.40604 11.28482 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.026307 B = 0.002368 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.097009 B =11823.323110 C =12444.048750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.127 4.127 12 C -0.090 4.090 13 C 0.125 3.875 14 N -0.718 5.718 15 C 0.569 3.431 16 O -0.521 6.521 17 C -0.144 4.144 18 C -0.207 4.207 19 S 0.231 5.769 20 C -0.239 4.239 21 C -0.008 4.008 22 Cl -0.017 7.017 23 C -0.133 4.133 24 C 0.172 3.828 25 H 0.254 0.746 26 H 0.015 0.985 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.397 0.603 34 H 0.179 0.821 35 H 0.179 0.821 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 -24.868 2.871 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.167 4.167 12 C -0.109 4.109 13 C 0.002 3.998 14 N -0.370 5.370 15 C 0.353 3.647 16 O -0.398 6.398 17 C -0.163 4.163 18 C -0.346 4.346 19 S 0.495 5.505 20 C -0.375 4.375 21 C -0.046 4.046 22 Cl 0.011 6.989 23 C -0.172 4.172 24 C 0.046 3.954 25 H 0.064 0.936 26 H 0.033 0.967 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.232 0.768 34 H 0.197 0.803 35 H 0.196 0.804 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.181 -25.437 2.596 25.662 hybrid contribution 0.320 1.706 0.877 1.945 sum 2.501 -23.731 3.474 24.114 Atomic orbital electron populations 1.70019 1.05265 1.25638 1.53854 1.25044 0.95289 0.98419 1.00866 0.86371 0.78926 0.83340 0.78143 1.20900 1.21622 1.21010 1.19139 0.92514 0.84858 1.41810 0.91809 1.44034 1.35907 1.01498 1.50043 1.20881 0.97487 0.87070 0.92672 1.22136 0.97047 0.98616 0.98870 1.21375 0.98702 0.95436 0.95396 1.21616 1.01743 0.79705 0.96738 1.45931 1.72875 1.08066 1.10085 1.17432 0.77520 0.83291 0.86486 1.90852 1.49941 1.84873 1.14105 1.20061 1.09521 0.94828 0.91847 1.25697 1.05958 1.03328 0.99582 1.83159 1.66134 0.98406 1.02764 1.25445 1.12084 1.02482 0.97531 1.20672 1.03937 0.92377 0.87646 1.98406 1.96147 1.98576 1.05722 1.22172 1.00420 0.94556 1.00088 1.20761 0.88586 0.98168 0.87898 0.93569 0.96670 0.92923 0.93588 0.92096 0.91330 0.91374 0.91563 0.76774 0.80323 0.80382 0.92338 0.93000 0.89414 0.96440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.98 11.20 55.49 0.62 -25.36 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 8 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -14.47 2.99 -172.32 -0.52 -14.99 16 10 C 0.15 2.90 6.50 -3.71 -0.02 2.87 16 11 C -0.13 -2.03 5.27 -26.45 -0.14 -2.17 16 12 C -0.09 -1.38 2.19 -90.42 -0.20 -1.58 16 13 C 0.12 1.75 5.07 -4.04 -0.02 1.73 16 14 N -0.72 -8.73 5.24 -61.46 -0.32 -9.05 16 15 C 0.57 7.78 7.79 -12.64 -0.10 7.68 16 16 O -0.52 -8.89 15.05 5.24 0.08 -8.81 16 17 C -0.14 -1.59 5.98 -104.61 -0.63 -2.21 16 18 C -0.21 -1.60 10.38 29.94 0.31 -1.29 16 19 S 0.23 1.35 23.02 -107.50 -2.47 -1.13 16 20 C -0.24 -1.81 11.00 28.88 0.32 -1.49 16 21 C -0.01 -0.08 6.49 -38.99 -0.25 -0.34 16 22 Cl -0.02 -0.21 27.24 -51.86 -1.41 -1.62 16 23 C -0.13 -2.42 5.36 -26.61 -0.14 -2.56 16 24 C 0.17 3.98 5.30 -3.72 -0.02 3.96 16 25 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 28 H 0.05 0.59 7.16 -51.93 -0.37 0.22 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.40 3.86 6.15 -40.82 -0.25 3.61 16 34 H 0.18 0.97 7.01 -52.48 -0.37 0.60 16 35 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 345.20 15.07 5.20 5.20 Total: -1.00 -31.81 345.20 -10.05 -41.86 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.07 Total: -0.20 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.12 Total: -2.45 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.22 Total: -49.40 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.47 Total: -1.13 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.41 Total: -1.62 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.81 -10.05 -41.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601232634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.015 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds