Wall clock time and date at job start Tue Mar 31 2020 15:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48500 * 109.47341 * 239.99664 * 3 2 1 5 5 H 1.48496 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46651 * 119.99846 * 3 2 1 7 7 C 1.38816 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99557 * 163.07518 * 7 2 1 9 9 N 1.36935 * 120.00109 * 343.07479 * 7 2 1 10 10 C 1.46934 * 120.62776 * 151.82327 * 9 7 2 11 11 C 1.53194 * 108.89214 * 126.34278 * 10 9 7 12 12 C 1.53350 * 109.14857 * 54.57312 * 11 10 9 13 13 C 1.53006 * 109.41355 * 178.67407 * 12 11 10 14 14 N 1.46501 * 109.47077 * 295.12943 * 13 12 11 15 15 C 1.34775 * 119.99550 * 180.02562 * 14 13 12 16 16 O 1.21639 * 120.00457 * 359.97438 * 15 14 13 17 17 C 1.47157 * 119.99854 * 180.02562 * 15 14 13 18 18 C 1.36045 * 123.46791 * 0.02562 * 17 15 14 19 19 S 1.70438 * 110.83279 * 180.02562 * 18 17 15 20 20 C 1.75501 * 92.45902 * 0.02562 * 19 18 17 21 21 C 1.32845 * 110.57688 * 359.71325 * 20 19 18 22 22 Cl 1.73601 * 123.46685 * 180.28073 * 21 20 19 23 23 C 1.53038 * 109.61172 * 298.71505 * 12 11 10 24 24 C 1.46917 * 120.63313 * 331.84348 * 9 7 2 25 25 H 0.96997 * 119.99488 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.58470 * 246.20071 * 10 9 7 27 27 H 1.09001 * 109.58650 * 6.48248 * 10 9 7 28 28 H 1.08992 * 109.49638 * 174.66086 * 11 10 9 29 29 H 1.09002 * 109.49602 * 294.75299 * 11 10 9 30 30 H 1.09005 * 109.42029 * 58.75446 * 12 11 10 31 31 H 1.08999 * 109.46966 * 55.13498 * 13 12 11 32 32 H 1.08999 * 109.46649 * 175.13268 * 13 12 11 33 33 H 0.96993 * 120.00351 * 0.02562 * 14 13 12 34 34 H 1.08008 * 124.58231 * 0.02562 * 18 17 15 35 35 H 1.08000 * 124.71336 * 180.02562 * 20 19 18 36 36 H 1.09007 * 109.49142 * 301.42123 * 23 12 11 37 37 H 1.08995 * 109.49863 * 181.32652 * 23 12 11 38 38 H 1.09003 * 109.58812 * 353.37838 * 24 9 7 39 39 H 1.09004 * 109.58911 * 113.65975 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7463 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3699 -2.3626 0.3442 10 6 1.8136 -3.6528 -0.2011 11 6 2.0696 -4.6199 0.9591 12 6 0.8116 -4.7022 1.8323 13 6 1.0493 -5.6921 2.9746 14 7 1.2322 -7.0376 2.4247 15 6 1.4566 -8.0784 3.2510 16 8 1.5078 -7.9006 4.4532 17 6 1.6408 -9.4299 2.6987 18 6 1.5991 -9.7086 1.3677 19 16 1.8512 -11.3709 1.0883 20 6 2.0177 -11.7109 2.8020 21 6 1.8892 -10.5966 3.5137 22 17 2.0029 -10.5482 5.2453 23 6 0.4972 -3.3210 2.4115 24 6 0.2260 -2.3410 1.2659 25 1 -0.4849 0.8401 -0.0004 26 1 1.0400 -4.0598 -0.8521 27 1 2.7330 -3.5126 -0.7696 28 1 2.3075 -5.6074 0.5638 29 1 2.9046 -4.2565 1.5581 30 1 -0.0285 -5.0418 1.2264 31 1 1.9424 -5.4010 3.5276 32 1 0.1894 -5.6871 3.6444 33 1 1.1917 -7.1794 1.4660 34 1 1.4292 -8.9755 0.5929 35 1 2.2043 -12.6892 3.2196 36 1 1.3470 -2.9701 2.9971 37 1 -0.3834 -3.3864 3.0506 38 1 0.0991 -1.3355 1.6674 39 1 -0.6777 -2.6386 0.7339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601232634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:48 Heat of formation + Delta-G solvation = -15.487144 kcal Electronic energy + Delta-G solvation = -22881.065968 eV Core-core repulsion = 19361.621029 eV Total energy + Delta-G solvation = -3519.444939 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02564 -39.42820 -38.28835 -36.88929 -36.38147 -34.49292 -32.62224 -31.48278 -30.82889 -28.40847 -26.33831 -25.37201 -23.84619 -22.90856 -22.16550 -20.86206 -20.25084 -19.28091 -18.67256 -18.08510 -16.89505 -16.61709 -16.41469 -16.02317 -15.66968 -15.30511 -15.15433 -14.81183 -14.62225 -14.43309 -14.30391 -14.02512 -13.82516 -13.75688 -13.38532 -12.99592 -12.80016 -12.56973 -12.53781 -12.47335 -12.27462 -12.02199 -11.83738 -11.74874 -11.61817 -11.24870 -11.09830 -10.85107 -10.51877 -10.16841 -9.97360 -9.34181 -8.65905 -7.86909 -5.31597 -0.34039 0.27619 0.66879 0.69919 1.46263 1.49137 1.55405 1.61916 2.15778 2.26334 2.51711 3.27651 3.60789 3.72181 3.83311 3.91538 3.96364 4.09553 4.28275 4.37571 4.51947 4.54811 4.70014 4.71566 4.75975 4.80827 4.90695 4.94230 5.03132 5.14084 5.28972 5.30096 5.38152 5.45695 5.56270 5.66630 5.80005 6.40711 6.53388 7.16619 7.21553 7.89289 8.39596 9.19111 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.026307 B = 0.002368 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.097009 B =11823.323110 C =12444.048750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.263 4.263 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.140 3.860 11 C -0.114 4.114 12 C -0.077 4.077 13 C 0.139 3.861 14 N -0.708 5.708 15 C 0.566 3.434 16 O -0.565 6.565 17 C -0.180 4.180 18 C -0.201 4.201 19 S 0.316 5.684 20 C -0.238 4.238 21 C -0.038 4.038 22 Cl -0.045 7.045 23 C -0.123 4.123 24 C 0.178 3.822 25 H 0.250 0.750 26 H 0.020 0.980 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.412 0.588 34 H 0.204 0.796 35 H 0.199 0.801 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.974 -27.369 1.298 27.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.394 4.394 8 H 0.082 0.918 9 N -0.336 5.336 10 C 0.015 3.985 11 C -0.153 4.153 12 C -0.096 4.096 13 C 0.015 3.985 14 N -0.360 5.360 15 C 0.352 3.648 16 O -0.445 6.445 17 C -0.198 4.198 18 C -0.340 4.340 19 S 0.582 5.418 20 C -0.374 4.374 21 C -0.076 4.076 22 Cl -0.017 7.017 23 C -0.162 4.162 24 C 0.052 3.948 25 H 0.059 0.941 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.249 0.751 34 H 0.221 0.779 35 H 0.216 0.784 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 2.985 -27.979 0.985 28.155 hybrid contribution 0.081 2.347 1.206 2.640 sum 3.066 -25.632 2.191 25.908 Atomic orbital electron populations 1.70167 1.06585 1.25856 1.55444 1.25768 0.96036 1.01408 1.01396 0.85393 0.77628 0.79467 0.78286 1.20015 1.22027 1.20694 1.19470 0.92783 0.86234 1.40865 0.91794 1.44321 1.35969 1.02478 1.50842 1.21073 0.97312 0.85918 0.94215 1.21993 0.96720 0.99436 0.97182 1.21201 0.98842 0.93886 0.95678 1.21274 1.01063 0.80355 0.95814 1.45738 1.72538 1.07014 1.10756 1.17866 0.76445 0.84430 0.86020 1.90825 1.52036 1.85667 1.16006 1.19845 1.13352 0.93462 0.93188 1.26097 1.03478 1.05582 0.98796 1.82994 1.63095 0.95762 0.99989 1.25841 1.09994 1.02567 0.99023 1.20839 1.06669 0.93538 0.86591 1.98386 1.96461 1.98670 1.08171 1.21975 1.00829 0.95131 0.98286 1.20554 0.87856 0.97432 0.88936 0.94139 0.96179 0.93054 0.89524 0.93291 0.90249 0.92593 0.91938 0.75100 0.77896 0.78399 0.93279 0.91325 0.93191 0.98225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.22 11.20 21.65 0.24 -54.98 16 2 C -0.05 -2.83 4.92 84.86 0.42 -2.42 16 3 Si 0.96 44.98 29.59 68.60 2.03 47.01 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 7 C -0.26 -14.43 9.58 84.03 0.81 -13.62 16 8 H 0.06 3.42 7.89 -2.91 -0.02 3.40 16 9 N -0.61 -30.12 2.99 -699.10 -2.09 -32.22 16 10 C 0.14 5.39 6.50 86.36 0.56 5.95 16 11 C -0.11 -3.38 5.27 30.78 0.16 -3.21 16 12 C -0.08 -2.22 2.19 -10.66 -0.02 -2.25 16 13 C 0.14 3.67 5.07 86.38 0.44 4.11 16 14 N -0.71 -15.67 5.24 -466.62 -2.45 -18.12 16 15 C 0.57 14.90 7.79 86.59 0.67 15.58 16 16 O -0.57 -19.49 15.05 -4.16 -0.06 -19.55 16 17 C -0.18 -3.63 5.98 -19.86 -0.12 -3.75 16 18 C -0.20 -2.34 10.38 67.31 0.70 -1.64 16 19 S 0.32 2.30 23.02 -56.49 -1.30 1.00 16 20 C -0.24 -2.94 11.00 66.64 0.73 -2.21 16 21 C -0.04 -0.77 6.49 22.68 0.15 -0.62 16 22 Cl -0.05 -1.11 27.24 -2.72 -0.07 -1.18 16 23 C -0.12 -4.43 5.36 30.67 0.16 -4.27 16 24 C 0.18 8.42 5.30 86.36 0.46 8.87 16 25 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 26 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 27 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 28 H 0.09 1.88 7.16 -2.39 -0.02 1.86 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.41 6.51 6.15 -92.71 -0.57 5.94 16 34 H 0.20 1.20 7.01 -2.91 -0.02 1.18 16 35 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 38 H 0.05 2.73 6.06 -2.39 -0.01 2.71 16 39 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 Total: -1.00 -72.34 345.20 1.92 -70.42 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.51 Total: 7.10 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 5.12 Total: 0.53 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -4.30 Total: -105.31 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.06 Total: -19.55 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.30 Total: 1.00 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.07 Total: -1.18 kcal Total: -72.34 1.92 -70.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601232634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.930 kcal (2) G-P(sol) polarization free energy of solvation -72.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds