Wall clock time and date at job start Tue Mar 31 2020 15:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47137 * 239.99936 * 3 2 1 5 5 H 1.48496 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46625 * 120.00033 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00531 * 163.08586 * 7 2 1 9 9 N 1.36936 * 119.99782 * 343.08514 * 7 2 1 10 10 C 1.46927 * 120.63328 * 331.83092 * 9 7 2 11 11 C 1.53186 * 108.77479 * 233.58439 * 10 9 7 12 12 C 1.53043 * 109.31437 * 305.36434 * 11 10 9 13 13 C 1.53032 * 109.53877 * 61.36566 * 12 11 10 14 14 H 1.09002 * 109.49679 * 58.58857 * 13 12 11 15 15 C 1.53000 * 109.49728 * 178.65027 * 13 12 11 16 16 N 1.46504 * 109.47125 * 184.99820 * 15 13 12 17 17 C 1.34781 * 120.00110 * 180.02562 * 16 15 13 18 18 O 1.21635 * 119.99541 * 359.97438 * 17 16 15 19 19 C 1.47152 * 119.99919 * 180.02562 * 17 16 15 20 20 C 1.36047 * 123.46952 * 359.70020 * 19 17 16 21 21 S 1.70438 * 110.83232 * 179.86279 * 20 19 17 22 22 C 1.75496 * 92.45818 * 0.34754 * 21 20 19 23 23 C 1.32839 * 110.58353 * 359.80265 * 22 21 20 24 24 Cl 1.73591 * 123.47408 * 180.02562 * 23 22 21 25 25 C 1.46933 * 120.63148 * 151.54973 * 9 7 2 26 26 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58266 * 353.37584 * 10 9 7 28 28 H 1.09008 * 109.58073 * 113.65523 * 10 9 7 29 29 H 1.08996 * 109.50109 * 65.31494 * 11 10 9 30 30 H 1.09007 * 109.49432 * 185.38366 * 11 10 9 31 31 H 1.09003 * 109.45993 * 181.38826 * 12 11 10 32 32 H 1.08997 * 109.45947 * 301.35843 * 12 11 10 33 33 H 1.09001 * 109.47453 * 305.00130 * 15 13 12 34 34 H 1.09005 * 109.46984 * 65.00208 * 15 13 12 35 35 H 0.96996 * 119.99820 * 0.02562 * 16 15 13 36 36 H 1.08005 * 124.58209 * 359.97438 * 20 19 17 37 37 H 1.08004 * 124.71361 * 179.78215 * 22 21 20 38 38 H 1.08998 * 109.58974 * 246.20756 * 25 9 7 39 39 H 1.09003 * 109.58500 * 6.62795 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2716 9 7 1.3700 -2.3621 0.3461 10 6 0.2261 -2.3399 1.2679 11 6 0.4974 -3.3193 2.4141 12 6 0.8119 -4.7009 1.8358 13 6 2.0672 -4.6174 0.9645 14 1 2.9022 -4.2538 1.5634 15 6 2.3999 -6.0056 0.4140 16 7 3.6660 -5.9489 -0.3210 17 6 4.1608 -7.0620 -0.8979 18 8 3.5563 -8.1136 -0.8079 19 6 5.4328 -7.0051 -1.6356 20 6 6.1637 -5.8673 -1.7843 21 16 7.5761 -6.1681 -2.6895 22 6 7.1782 -7.8659 -2.8879 23 6 6.0308 -8.1505 -2.2819 24 17 5.3232 -9.7356 -2.2675 25 6 1.8101 -3.6522 -0.2026 26 1 -0.4850 0.8400 -0.0004 27 1 0.0993 -1.3343 1.6686 28 1 -0.6775 -2.6380 0.7359 29 1 1.3472 -2.9679 2.9994 30 1 -0.3830 -3.3838 3.0535 31 1 0.9812 -5.4055 2.6500 32 1 -0.0282 -5.0408 1.2302 33 1 2.4903 -6.7118 1.2394 34 1 1.6047 -6.3306 -0.2569 35 1 4.1482 -5.1103 -0.3923 36 1 5.8872 -4.9041 -1.3814 37 1 7.7821 -8.5801 -3.4279 38 1 1.0336 -4.0574 -0.8513 39 1 2.7289 -3.5126 -0.7723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602897134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:11 Heat of formation + Delta-G solvation = 3.284348 kcal Electronic energy + Delta-G solvation = -23114.232986 eV Core-core repulsion = 19595.602040 eV Total energy + Delta-G solvation = -3518.630946 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -39.95627 -38.03043 -37.30332 -36.04967 -34.82307 -33.04602 -30.90403 -30.46790 -29.64065 -26.00170 -25.32424 -24.62874 -22.21195 -21.59319 -20.86792 -19.60275 -19.02131 -18.43561 -17.26854 -16.67527 -15.58588 -15.38141 -15.12931 -14.82173 -14.39678 -13.89200 -13.68933 -13.56648 -13.45523 -13.37266 -13.17602 -12.80368 -12.34488 -12.21489 -12.17738 -11.79561 -11.64663 -11.31359 -11.04437 -10.93461 -10.73605 -10.53893 -10.28084 -10.20797 -9.98704 -9.84389 -9.57584 -9.45262 -9.32083 -8.96656 -8.65632 -8.50007 -6.70923 -5.82976 -3.26629 0.38133 0.93593 1.35829 1.53848 2.36941 3.19564 3.27808 3.33745 3.40434 3.40699 4.30923 4.44041 4.81008 4.93200 5.05354 5.10025 5.27113 5.41148 5.43553 5.49358 5.55296 5.60852 5.81521 5.94026 5.98422 6.21587 6.30148 6.34758 6.47789 6.56151 6.67858 6.74507 6.83527 6.93359 7.36906 7.54764 7.64177 7.73676 8.24902 8.40510 9.16536 9.80017 10.37284 11.25108 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.003097 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.508116 B = 9039.925746 C =10616.215624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.257 4.257 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.129 3.871 16 N -0.717 5.717 17 C 0.570 3.430 18 O -0.524 6.524 19 C -0.146 4.146 20 C -0.204 4.204 21 S 0.232 5.768 22 C -0.241 4.241 23 C -0.007 4.007 24 Cl -0.019 7.019 25 C 0.154 3.846 26 H 0.255 0.745 27 H 0.086 0.914 28 H 0.018 0.982 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.181 0.819 37 H 0.178 0.822 38 H 0.020 0.980 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.967 -13.906 -2.889 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.386 4.386 8 H 0.081 0.919 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.180 4.180 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.091 0.909 15 C 0.005 3.995 16 N -0.369 5.369 17 C 0.355 3.645 18 O -0.401 6.401 19 C -0.164 4.164 20 C -0.343 4.343 21 S 0.496 5.504 22 C -0.377 4.377 23 C -0.045 4.045 24 Cl 0.010 6.990 25 C 0.027 3.973 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.235 0.765 36 H 0.198 0.802 37 H 0.196 0.804 38 H 0.038 0.962 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.522 -13.739 -3.308 20.263 hybrid contribution -0.647 0.365 0.432 0.859 sum 13.875 -13.374 -2.876 19.485 Atomic orbital electron populations 1.70025 1.05291 1.25678 1.53488 1.25050 0.95263 0.98416 1.00735 0.86386 0.78952 0.83419 0.78089 1.20887 1.21596 1.21016 1.19098 0.92422 0.84862 1.42233 0.91862 1.44041 1.36011 1.01363 1.49944 1.20796 0.88538 0.98290 0.88054 1.22165 1.00108 0.95961 0.99812 1.21335 0.96712 0.97745 0.97964 1.22038 0.98877 0.93557 0.99392 0.90878 1.21490 0.84429 0.98086 0.95456 1.45912 1.24961 1.11278 1.54704 1.17413 0.83873 0.84199 0.79057 1.90836 1.59999 1.29264 1.60001 1.20040 0.98811 0.91927 1.05641 1.25742 1.00788 1.02825 1.04931 1.83173 1.18920 1.00719 1.47540 1.25435 1.01383 1.01455 1.09424 1.20651 0.94513 0.88615 1.00764 1.98398 1.83401 1.20075 1.97159 1.20984 0.97429 0.86870 0.91997 0.93519 0.89606 0.96419 0.92767 0.93166 0.93401 0.92432 0.91771 0.91362 0.76476 0.80179 0.80434 0.96248 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.67 11.20 55.49 0.62 -25.05 16 2 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 3 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.26 -6.77 9.58 -15.06 -0.14 -6.92 16 8 H 0.06 1.61 7.89 -52.48 -0.41 1.20 16 9 N -0.59 -14.22 2.99 -172.05 -0.51 -14.73 16 10 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C -0.10 -1.60 5.16 -26.69 -0.14 -1.74 16 13 C -0.12 -1.89 2.38 -90.28 -0.22 -2.10 16 14 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 15 C 0.13 1.86 5.07 -4.04 -0.02 1.84 16 16 N -0.72 -9.59 5.30 -61.46 -0.33 -9.92 16 17 C 0.57 8.32 7.79 -12.64 -0.10 8.22 16 18 O -0.52 -9.20 15.05 5.25 0.08 -9.12 16 19 C -0.15 -1.77 5.98 -104.61 -0.63 -2.40 16 20 C -0.20 -1.89 10.38 29.95 0.31 -1.58 16 21 S 0.23 1.66 23.02 -107.50 -2.47 -0.82 16 22 C -0.24 -2.05 11.00 28.87 0.32 -1.74 16 23 C -0.01 -0.08 6.49 -38.98 -0.25 -0.33 16 24 Cl -0.02 -0.24 27.24 -51.86 -1.41 -1.65 16 25 C 0.15 3.02 5.63 -3.48 -0.02 3.00 16 26 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 28 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.40 4.68 6.22 -40.82 -0.25 4.43 16 36 H 0.18 1.36 7.01 -52.48 -0.37 0.99 16 37 H 0.18 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.91 7.16 -51.93 -0.37 0.54 16 LS Contribution 345.46 15.07 5.21 5.21 Total: -1.00 -31.14 345.46 -10.09 -41.23 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.08 Total: 1.41 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.15 Total: -2.57 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.22 Total: -49.70 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.47 Total: -0.82 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.41 Total: -1.65 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.14 -10.09 -41.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602897134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.513 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds