Wall clock time and date at job start Tue Mar 31 2020 15:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47137 * 239.99936 * 3 2 1 5 5 H 1.48496 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46625 * 120.00033 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00531 * 163.08586 * 7 2 1 9 9 N 1.36936 * 119.99782 * 343.08514 * 7 2 1 10 10 C 1.46927 * 120.63328 * 331.83092 * 9 7 2 11 11 C 1.53186 * 108.77479 * 233.58439 * 10 9 7 12 12 C 1.53043 * 109.31437 * 305.36434 * 11 10 9 13 13 C 1.53032 * 109.53877 * 61.36566 * 12 11 10 14 14 H 1.09002 * 109.49679 * 58.58857 * 13 12 11 15 15 C 1.53000 * 109.49728 * 178.65027 * 13 12 11 16 16 N 1.46504 * 109.47125 * 184.99820 * 15 13 12 17 17 C 1.34781 * 120.00110 * 180.02562 * 16 15 13 18 18 O 1.21635 * 119.99541 * 359.97438 * 17 16 15 19 19 C 1.47152 * 119.99919 * 180.02562 * 17 16 15 20 20 C 1.36047 * 123.46952 * 359.70020 * 19 17 16 21 21 S 1.70438 * 110.83232 * 179.86279 * 20 19 17 22 22 C 1.75496 * 92.45818 * 0.34754 * 21 20 19 23 23 C 1.32839 * 110.58353 * 359.80265 * 22 21 20 24 24 Cl 1.73591 * 123.47408 * 180.02562 * 23 22 21 25 25 C 1.46933 * 120.63148 * 151.54973 * 9 7 2 26 26 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58266 * 353.37584 * 10 9 7 28 28 H 1.09008 * 109.58073 * 113.65523 * 10 9 7 29 29 H 1.08996 * 109.50109 * 65.31494 * 11 10 9 30 30 H 1.09007 * 109.49432 * 185.38366 * 11 10 9 31 31 H 1.09003 * 109.45993 * 181.38826 * 12 11 10 32 32 H 1.08997 * 109.45947 * 301.35843 * 12 11 10 33 33 H 1.09001 * 109.47453 * 305.00130 * 15 13 12 34 34 H 1.09005 * 109.46984 * 65.00208 * 15 13 12 35 35 H 0.96996 * 119.99820 * 0.02562 * 16 15 13 36 36 H 1.08005 * 124.58209 * 359.97438 * 20 19 17 37 37 H 1.08004 * 124.71361 * 179.78215 * 22 21 20 38 38 H 1.08998 * 109.58974 * 246.20756 * 25 9 7 39 39 H 1.09003 * 109.58500 * 6.62795 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2716 9 7 1.3700 -2.3621 0.3461 10 6 0.2261 -2.3399 1.2679 11 6 0.4974 -3.3193 2.4141 12 6 0.8119 -4.7009 1.8358 13 6 2.0672 -4.6174 0.9645 14 1 2.9022 -4.2538 1.5634 15 6 2.3999 -6.0056 0.4140 16 7 3.6660 -5.9489 -0.3210 17 6 4.1608 -7.0620 -0.8979 18 8 3.5563 -8.1136 -0.8079 19 6 5.4328 -7.0051 -1.6356 20 6 6.1637 -5.8673 -1.7843 21 16 7.5761 -6.1681 -2.6895 22 6 7.1782 -7.8659 -2.8879 23 6 6.0308 -8.1505 -2.2819 24 17 5.3232 -9.7356 -2.2675 25 6 1.8101 -3.6522 -0.2026 26 1 -0.4850 0.8400 -0.0004 27 1 0.0993 -1.3343 1.6686 28 1 -0.6775 -2.6380 0.7359 29 1 1.3472 -2.9679 2.9994 30 1 -0.3830 -3.3838 3.0535 31 1 0.9812 -5.4055 2.6500 32 1 -0.0282 -5.0408 1.2302 33 1 2.4903 -6.7118 1.2394 34 1 1.6047 -6.3306 -0.2569 35 1 4.1482 -5.1103 -0.3923 36 1 5.8872 -4.9041 -1.3814 37 1 7.7821 -8.5801 -3.4279 38 1 1.0336 -4.0574 -0.8513 39 1 2.7289 -3.5126 -0.7723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602897134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:10 Heat of formation + Delta-G solvation = -15.485293 kcal Electronic energy + Delta-G solvation = -23115.046899 eV Core-core repulsion = 19595.602040 eV Total energy + Delta-G solvation = -3519.444859 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01454 -39.42583 -38.28910 -36.89104 -36.23407 -34.67088 -32.31601 -32.16946 -30.64118 -27.31397 -27.06529 -25.63425 -23.82335 -22.87046 -22.10007 -20.90358 -20.16641 -19.28145 -18.60236 -18.09659 -16.85123 -16.66132 -16.51168 -16.00462 -15.75389 -15.46701 -15.05215 -14.62558 -14.53991 -14.45031 -14.36025 -14.00869 -13.84271 -13.68842 -13.50266 -13.00902 -12.83612 -12.56085 -12.47862 -12.46182 -12.29798 -11.97399 -11.82227 -11.75169 -11.57331 -11.32297 -11.09764 -10.83873 -10.51139 -10.16398 -9.97672 -9.35358 -8.66414 -7.85267 -5.31820 -0.35180 0.27005 0.65633 0.69731 1.48491 1.51302 1.57576 1.61139 2.16923 2.26166 2.52507 3.29713 3.57320 3.63427 3.90706 3.99476 4.01525 4.08466 4.27206 4.36831 4.41704 4.57449 4.61344 4.74440 4.77711 4.85303 4.88796 4.92892 5.01846 5.11337 5.23025 5.33509 5.38843 5.47980 5.58018 5.67762 5.79284 6.40070 6.51368 7.16093 7.19524 7.87396 8.40144 9.20830 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.003097 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.508116 B = 9039.925746 C =10616.215624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.299 1.299 6 H -0.277 1.277 7 C -0.263 4.263 8 H 0.073 0.927 9 N -0.609 5.609 10 C 0.173 3.827 11 C -0.129 4.129 12 C -0.098 4.098 13 C -0.099 4.099 14 H 0.079 0.921 15 C 0.140 3.860 16 N -0.712 5.712 17 C 0.568 3.432 18 O -0.562 6.562 19 C -0.179 4.179 20 C -0.205 4.205 21 S 0.313 5.687 22 C -0.235 4.235 23 C -0.036 4.036 24 Cl -0.042 7.042 25 C 0.153 3.847 26 H 0.249 0.751 27 H 0.051 0.949 28 H -0.009 1.009 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.409 0.591 36 H 0.197 0.803 37 H 0.202 0.798 38 H 0.004 0.996 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.831 -13.925 -2.855 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.393 4.393 8 H 0.091 0.909 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.168 4.168 12 C -0.136 4.136 13 C -0.120 4.120 14 H 0.097 0.903 15 C 0.016 3.984 16 N -0.364 5.364 17 C 0.354 3.646 18 O -0.443 6.443 19 C -0.197 4.197 20 C -0.344 4.344 21 S 0.578 5.422 22 C -0.372 4.372 23 C -0.075 4.075 24 Cl -0.014 7.014 25 C 0.027 3.973 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.009 0.991 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.246 0.754 36 H 0.214 0.786 37 H 0.219 0.781 38 H 0.022 0.978 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.427 -13.766 -3.277 22.448 hybrid contribution -1.442 0.412 0.336 1.537 sum 15.985 -13.354 -2.941 21.036 Atomic orbital electron populations 1.70197 1.06857 1.25852 1.55430 1.25831 0.95960 1.01634 1.01292 0.85354 0.77546 0.79165 0.78461 1.19839 1.22520 1.20260 1.19530 0.93003 0.85849 1.40931 0.90923 1.44316 1.35942 1.02327 1.50598 1.20628 0.87677 0.97748 0.89251 1.21990 1.00956 0.95881 0.97996 1.21337 0.96549 0.96808 0.98866 1.21791 0.99102 0.93298 0.97769 0.90284 1.21279 0.84717 0.96904 0.95526 1.45827 1.24549 1.11611 1.54408 1.17816 0.84501 0.83643 0.78664 1.90807 1.61339 1.30561 1.61550 1.19883 0.98750 0.93362 1.07736 1.26061 1.01396 1.02626 1.04289 1.82994 1.16073 0.98426 1.44682 1.25842 1.00286 1.03228 1.07801 1.20789 0.95896 0.87824 1.02946 1.98380 1.83993 1.21601 1.97382 1.21109 0.97101 0.85774 0.93326 0.94236 0.93040 0.99096 0.92719 0.91342 0.90185 0.92775 0.90891 0.92542 0.75445 0.78626 0.78140 0.97809 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.00 11.20 21.65 0.24 -54.76 16 2 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 3 Si 0.97 43.41 29.59 68.60 2.03 45.44 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.26 -13.85 9.58 84.03 0.81 -13.04 16 8 H 0.07 3.61 7.89 -2.91 -0.02 3.58 16 9 N -0.61 -29.41 2.99 -698.24 -2.09 -31.50 16 10 C 0.17 8.21 5.30 86.36 0.46 8.66 16 11 C -0.13 -4.63 6.08 30.67 0.19 -4.45 16 12 C -0.10 -2.96 5.16 30.62 0.16 -2.80 16 13 C -0.10 -3.01 2.38 -10.57 -0.03 -3.03 16 14 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 15 C 0.14 3.84 5.07 86.38 0.44 4.28 16 16 N -0.71 -18.17 5.30 -466.61 -2.47 -20.64 16 17 C 0.57 16.28 7.79 86.58 0.67 16.95 16 18 O -0.56 -19.96 15.05 -4.14 -0.06 -20.02 16 19 C -0.18 -4.13 5.98 -19.86 -0.12 -4.24 16 20 C -0.20 -3.25 10.38 67.31 0.70 -2.55 16 21 S 0.31 3.31 23.02 -56.49 -1.30 2.01 16 22 C -0.24 -3.40 11.00 66.64 0.73 -2.66 16 23 C -0.04 -0.80 6.49 22.68 0.15 -0.65 16 24 Cl -0.04 -1.07 27.24 -2.72 -0.07 -1.14 16 25 C 0.15 5.91 5.63 86.51 0.49 6.40 16 26 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.05 2.79 6.06 -2.39 -0.01 2.77 16 28 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.41 8.80 6.22 -92.71 -0.58 8.22 16 36 H 0.20 2.34 7.01 -2.91 -0.02 2.32 16 37 H 0.20 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.06 2.11 7.16 -2.39 -0.02 2.09 16 Total: -1.00 -69.69 345.46 1.84 -67.85 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.50 Total: 12.31 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 5.06 Total: 0.45 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -4.32 Total: -106.90 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.06 Total: -20.02 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.30 Total: 2.01 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.07 Total: -1.14 kcal Total: -69.69 1.84 -67.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602897134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.368 kcal (2) G-P(sol) polarization free energy of solvation -69.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds