Wall clock time and date at job start Tue Mar 31 2020 15:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00208 * 2 1 4 4 H 1.48498 * 109.47390 * 272.94948 * 3 2 1 5 5 H 1.48501 * 109.47116 * 32.95027 * 3 2 1 6 6 H 1.48504 * 109.47242 * 152.94961 * 3 2 1 7 7 C 1.38810 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99995 * 339.28888 * 7 2 1 9 9 N 1.36939 * 120.00240 * 159.28584 * 7 2 1 10 10 C 1.46921 * 120.63034 * 152.55746 * 9 7 2 11 11 C 1.53198 * 108.77519 * 126.41479 * 10 9 7 12 12 C 1.53037 * 109.31261 * 54.63514 * 11 10 9 13 13 C 1.53042 * 109.52572 * 298.64182 * 12 11 10 14 14 H 1.09000 * 109.49612 * 301.40847 * 13 12 11 15 15 C 1.53001 * 109.49619 * 181.30823 * 13 12 11 16 16 N 1.46503 * 109.47041 * 174.99803 * 15 13 12 17 17 C 1.34774 * 120.00111 * 179.97438 * 16 15 13 18 18 O 1.21646 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.47160 * 120.00105 * 179.97438 * 17 16 15 20 20 C 1.36043 * 123.46640 * 0.03382 * 19 17 16 21 21 S 1.70445 * 110.83257 * 179.97438 * 20 19 17 22 22 C 1.75495 * 92.45513 * 359.97438 * 21 20 19 23 23 C 1.32841 * 110.58382 * 359.71449 * 22 21 20 24 24 Cl 1.73600 * 123.47439 * 180.24631 * 23 22 21 25 25 C 1.46922 * 120.63210 * 332.58173 * 9 7 2 26 26 H 0.97006 * 119.99827 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.59011 * 6.63068 * 10 9 7 28 28 H 1.08995 * 109.70754 * 246.27107 * 10 9 7 29 29 H 1.08996 * 109.49661 * 294.68188 * 11 10 9 30 30 H 1.09007 * 109.49664 * 174.58748 * 11 10 9 31 31 H 1.08997 * 109.45998 * 58.65423 * 12 11 10 32 32 H 1.08998 * 109.45884 * 178.63128 * 12 11 10 33 33 H 1.08992 * 109.47387 * 295.00002 * 15 13 12 34 34 H 1.09002 * 109.47141 * 55.00211 * 15 13 12 35 35 H 0.96999 * 119.99640 * 0.02562 * 16 15 13 36 36 H 1.08001 * 124.58592 * 359.97438 * 20 19 17 37 37 H 1.08010 * 124.71100 * 180.02562 * 22 21 20 38 38 H 1.09007 * 109.58531 * 353.37489 * 25 9 7 39 39 H 1.09002 * 109.59019 * 113.65338 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4353 2.0824 -1.3982 5 1 1.4803 2.6338 0.7615 6 1 3.5776 1.4229 0.6367 7 6 2.0102 -1.2021 -0.0005 8 1 1.5225 -2.1074 0.3298 9 7 3.3132 -1.2404 -0.4200 10 6 4.2353 -2.2624 0.0936 11 6 4.8746 -2.9907 -1.0929 12 6 5.5272 -1.9661 -2.0236 13 6 4.4596 -1.0106 -2.5614 14 1 3.6966 -1.5795 -3.0928 15 6 5.1074 -0.0068 -3.5173 16 7 4.0692 0.8306 -4.1232 17 6 4.4084 1.7925 -5.0043 18 8 5.5765 1.9650 -5.2967 19 6 3.3655 2.6333 -5.6133 20 6 2.0397 2.5015 -5.3378 21 16 1.1220 3.6364 -6.2181 22 6 2.5504 4.3129 -6.9809 23 6 3.6448 3.6887 -6.5595 24 17 5.2451 4.0947 -7.0959 25 6 3.8158 -0.2598 -1.3919 26 1 -0.4850 0.8401 0.0004 27 1 3.6850 -2.9760 0.7069 28 1 5.0124 -1.7883 0.6931 29 1 4.1077 -3.5409 -1.6380 30 1 5.6316 -3.6852 -0.7284 31 1 6.2767 -1.3994 -1.4713 32 1 6.0039 -2.4836 -2.8561 33 1 5.8054 0.6224 -2.9651 34 1 5.6434 -0.5440 -4.2998 35 1 3.1379 0.6933 -3.8897 36 1 1.6249 1.7760 -4.6538 37 1 2.5416 5.1272 -7.6903 38 1 2.9887 0.3481 -1.7587 39 1 4.5567 0.3814 -0.9143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602897135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:18 Heat of formation + Delta-G solvation = 8.587461 kcal Electronic energy + Delta-G solvation = -23675.981011 eV Core-core repulsion = 20157.580025 eV Total energy + Delta-G solvation = -3518.400986 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.92904 -38.27257 -37.32093 -35.98722 -34.83127 -33.15184 -31.38166 -30.68966 -29.77281 -26.15910 -25.35537 -24.72763 -22.62220 -21.49763 -20.91693 -19.65008 -19.16134 -18.40745 -17.20986 -16.87517 -15.67780 -15.59260 -15.18107 -14.95935 -14.32297 -14.04440 -13.64883 -13.59576 -13.55233 -13.29429 -13.22115 -13.10979 -12.83014 -12.41721 -12.11499 -11.71689 -11.66150 -11.58110 -11.49546 -10.87722 -10.83655 -10.64483 -10.55984 -10.17973 -9.99762 -9.75240 -9.72145 -9.51655 -9.24096 -8.94156 -8.69281 -8.58165 -7.04506 -6.03684 -3.38946 0.47178 1.02097 1.44914 1.60708 2.43499 3.19500 3.23923 3.33118 3.41918 3.45468 4.40097 4.43199 4.76637 4.89232 5.04188 5.13045 5.14564 5.21117 5.27221 5.38604 5.57596 5.58811 5.61923 5.78949 5.83445 6.00417 6.07095 6.10247 6.26736 6.30449 6.47618 6.52121 6.54653 6.64937 6.68618 6.92788 7.58003 7.88328 8.24969 8.28273 8.86470 9.63678 10.02608 11.12104 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.004230 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.635609 B = 6618.250741 C = 8068.865499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.878 3.122 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.258 4.258 8 H 0.087 0.913 9 N -0.606 5.606 10 C 0.146 3.854 11 C -0.134 4.134 12 C -0.101 4.101 13 C -0.119 4.119 14 H 0.080 0.920 15 C 0.128 3.872 16 N -0.719 5.719 17 C 0.572 3.428 18 O -0.525 6.525 19 C -0.150 4.150 20 C -0.202 4.202 21 S 0.236 5.764 22 C -0.243 4.243 23 C -0.006 4.006 24 Cl -0.021 7.021 25 C 0.134 3.866 26 H 0.262 0.738 27 H 0.062 0.938 28 H 0.022 0.978 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.402 0.598 36 H 0.182 0.818 37 H 0.179 0.821 38 H 0.069 0.931 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.119 5.008 -13.661 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.708 3.292 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.386 4.386 8 H 0.104 0.896 9 N -0.329 5.329 10 C 0.020 3.980 11 C -0.173 4.173 12 C -0.139 4.139 13 C -0.140 4.140 14 H 0.098 0.902 15 C 0.004 3.996 16 N -0.371 5.371 17 C 0.357 3.643 18 O -0.403 6.403 19 C -0.168 4.168 20 C -0.340 4.340 21 S 0.501 5.499 22 C -0.379 4.379 23 C -0.044 4.044 24 Cl 0.008 6.992 25 C 0.008 3.992 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.238 0.762 36 H 0.199 0.801 37 H 0.196 0.804 38 H 0.087 0.913 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.407 5.555 -13.957 15.655 hybrid contribution 1.538 0.659 0.292 1.698 sum 5.945 6.214 -13.666 16.146 Atomic orbital electron populations 1.69841 1.05631 1.26483 1.53056 1.25267 0.95194 0.97352 0.99690 0.87055 0.80186 0.84812 0.77111 1.21691 1.23086 1.19647 1.18963 0.85002 0.94804 1.39866 0.89582 1.44347 1.08732 1.33582 1.46256 1.20960 0.92393 0.91266 0.93374 1.21988 0.99466 0.97506 0.98379 1.21341 0.96954 0.96898 0.98691 1.21976 0.98501 0.96610 0.96915 0.90160 1.21472 0.90007 0.92330 0.95776 1.45940 1.11600 1.35256 1.44322 1.17406 0.87719 0.79958 0.79224 1.90823 1.18548 1.69271 1.61616 1.20010 0.93329 1.00665 1.02792 1.25806 0.97342 1.05497 1.05396 1.83183 1.06648 1.25343 1.34689 1.25441 0.95263 1.07994 1.09163 1.20618 0.88286 0.97004 0.98532 1.98390 1.20404 1.92259 1.88137 1.21364 0.97021 0.91802 0.89039 0.92777 0.91925 0.95986 0.91939 0.92543 0.92284 0.92689 0.91469 0.91404 0.76239 0.80119 0.80400 0.91328 0.95600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.55 13.97 55.49 0.78 -25.77 16 2 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 3 Si 0.88 21.65 24.34 -169.99 -4.14 17.51 16 4 H -0.29 -6.66 6.62 56.52 0.37 -6.29 16 5 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.27 -6.77 6.64 56.52 0.38 -6.39 16 7 C -0.26 -6.92 10.03 -15.06 -0.15 -7.07 16 8 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 9 N -0.61 -13.76 2.77 -172.34 -0.48 -14.23 16 10 C 0.15 2.76 6.52 -3.71 -0.02 2.73 16 11 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 12 C -0.10 -1.47 5.17 -26.69 -0.14 -1.61 16 13 C -0.12 -1.95 2.37 -90.51 -0.21 -2.16 16 14 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 15 C 0.13 1.95 5.07 -4.04 -0.02 1.93 16 16 N -0.72 -11.20 5.30 -61.47 -0.33 -11.52 16 17 C 0.57 9.39 7.79 -12.64 -0.10 9.29 16 18 O -0.53 -9.80 15.05 5.24 0.08 -9.72 16 19 C -0.15 -2.14 5.98 -104.61 -0.63 -2.76 16 20 C -0.20 -2.43 10.38 29.94 0.31 -2.12 16 21 S 0.24 2.20 23.02 -107.50 -2.47 -0.27 16 22 C -0.24 -2.44 11.00 28.87 0.32 -2.12 16 23 C -0.01 -0.07 6.49 -38.99 -0.25 -0.33 16 24 Cl -0.02 -0.28 27.24 -51.86 -1.41 -1.69 16 25 C 0.13 2.74 3.29 -3.73 -0.01 2.73 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.40 6.00 6.20 -40.82 -0.25 5.75 16 36 H 0.18 2.04 7.01 -52.49 -0.37 1.67 16 37 H 0.18 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.07 1.50 3.71 -51.93 -0.19 1.31 16 39 H 0.03 0.55 7.07 -51.93 -0.37 0.19 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -31.40 338.96 -9.04 -40.44 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.01 Total: 3.32 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -1.16 Total: -3.16 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.03 Total: -51.53 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.14 Total: 17.51 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.47 Total: -0.27 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.41 Total: -1.69 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.40 -9.04 -40.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602897135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.029 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds