Wall clock time and date at job start Tue Mar 31 2020 15:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00208 * 2 1 4 4 H 1.48498 * 109.47390 * 272.94948 * 3 2 1 5 5 H 1.48501 * 109.47116 * 32.95027 * 3 2 1 6 6 H 1.48504 * 109.47242 * 152.94961 * 3 2 1 7 7 C 1.38810 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99995 * 339.28888 * 7 2 1 9 9 N 1.36939 * 120.00240 * 159.28584 * 7 2 1 10 10 C 1.46921 * 120.63034 * 152.55746 * 9 7 2 11 11 C 1.53198 * 108.77519 * 126.41479 * 10 9 7 12 12 C 1.53037 * 109.31261 * 54.63514 * 11 10 9 13 13 C 1.53042 * 109.52572 * 298.64182 * 12 11 10 14 14 H 1.09000 * 109.49612 * 301.40847 * 13 12 11 15 15 C 1.53001 * 109.49619 * 181.30823 * 13 12 11 16 16 N 1.46503 * 109.47041 * 174.99803 * 15 13 12 17 17 C 1.34774 * 120.00111 * 179.97438 * 16 15 13 18 18 O 1.21646 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.47160 * 120.00105 * 179.97438 * 17 16 15 20 20 C 1.36043 * 123.46640 * 0.03382 * 19 17 16 21 21 S 1.70445 * 110.83257 * 179.97438 * 20 19 17 22 22 C 1.75495 * 92.45513 * 359.97438 * 21 20 19 23 23 C 1.32841 * 110.58382 * 359.71449 * 22 21 20 24 24 Cl 1.73600 * 123.47439 * 180.24631 * 23 22 21 25 25 C 1.46922 * 120.63210 * 332.58173 * 9 7 2 26 26 H 0.97006 * 119.99827 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.59011 * 6.63068 * 10 9 7 28 28 H 1.08995 * 109.70754 * 246.27107 * 10 9 7 29 29 H 1.08996 * 109.49661 * 294.68188 * 11 10 9 30 30 H 1.09007 * 109.49664 * 174.58748 * 11 10 9 31 31 H 1.08997 * 109.45998 * 58.65423 * 12 11 10 32 32 H 1.08998 * 109.45884 * 178.63128 * 12 11 10 33 33 H 1.08992 * 109.47387 * 295.00002 * 15 13 12 34 34 H 1.09002 * 109.47141 * 55.00211 * 15 13 12 35 35 H 0.96999 * 119.99640 * 0.02562 * 16 15 13 36 36 H 1.08001 * 124.58592 * 359.97438 * 20 19 17 37 37 H 1.08010 * 124.71100 * 180.02562 * 22 21 20 38 38 H 1.09007 * 109.58531 * 353.37489 * 25 9 7 39 39 H 1.09002 * 109.59019 * 113.65338 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4353 2.0824 -1.3982 5 1 1.4803 2.6338 0.7615 6 1 3.5776 1.4229 0.6367 7 6 2.0102 -1.2021 -0.0005 8 1 1.5225 -2.1074 0.3298 9 7 3.3132 -1.2404 -0.4200 10 6 4.2353 -2.2624 0.0936 11 6 4.8746 -2.9907 -1.0929 12 6 5.5272 -1.9661 -2.0236 13 6 4.4596 -1.0106 -2.5614 14 1 3.6966 -1.5795 -3.0928 15 6 5.1074 -0.0068 -3.5173 16 7 4.0692 0.8306 -4.1232 17 6 4.4084 1.7925 -5.0043 18 8 5.5765 1.9650 -5.2967 19 6 3.3655 2.6333 -5.6133 20 6 2.0397 2.5015 -5.3378 21 16 1.1220 3.6364 -6.2181 22 6 2.5504 4.3129 -6.9809 23 6 3.6448 3.6887 -6.5595 24 17 5.2451 4.0947 -7.0959 25 6 3.8158 -0.2598 -1.3919 26 1 -0.4850 0.8401 0.0004 27 1 3.6850 -2.9760 0.7069 28 1 5.0124 -1.7883 0.6931 29 1 4.1077 -3.5409 -1.6380 30 1 5.6316 -3.6852 -0.7284 31 1 6.2767 -1.3994 -1.4713 32 1 6.0039 -2.4836 -2.8561 33 1 5.8054 0.6224 -2.9651 34 1 5.6434 -0.5440 -4.2998 35 1 3.1379 0.6933 -3.8897 36 1 1.6249 1.7760 -4.6538 37 1 2.5416 5.1272 -7.6903 38 1 2.9887 0.3481 -1.7587 39 1 4.5567 0.3814 -0.9143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602897135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:15 Heat of formation + Delta-G solvation = -11.592675 kcal Electronic energy + Delta-G solvation = -23676.856087 eV Core-core repulsion = 20157.580025 eV Total energy + Delta-G solvation = -3519.276062 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -41.11307 -39.67121 -38.36504 -36.94960 -36.24258 -34.84800 -32.96211 -32.24422 -30.79526 -27.44920 -27.13018 -25.80301 -24.16107 -22.77378 -22.18596 -21.03351 -20.29589 -19.36805 -18.82421 -18.20475 -17.33070 -16.77853 -16.50900 -16.02097 -15.92573 -15.51706 -15.11109 -14.92404 -14.66029 -14.59644 -14.41860 -14.38667 -13.99116 -13.84255 -13.56906 -13.37033 -13.07255 -12.63682 -12.57263 -12.53148 -12.20590 -12.09495 -11.80629 -11.70377 -11.61097 -11.37712 -11.27329 -10.92229 -10.65726 -10.24537 -10.05445 -9.43311 -8.92758 -8.17476 -5.48219 -0.43912 0.20549 0.57461 0.63210 1.22999 1.39451 1.45809 1.54553 2.09199 2.17572 2.37015 3.03214 3.31382 3.52485 3.79640 3.83780 3.91620 3.97893 4.18954 4.29066 4.30252 4.44852 4.48297 4.59756 4.67522 4.72426 4.76007 4.79939 4.88822 4.97534 5.09808 5.18371 5.23203 5.30065 5.39027 5.58686 5.87060 6.13016 6.37797 6.91579 7.08001 7.61955 8.03588 9.02356 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.004230 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.635609 B = 6618.250741 C = 8068.865499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.023 4.023 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.313 1.313 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.055 0.945 9 N -0.620 5.620 10 C 0.137 3.863 11 C -0.124 4.124 12 C -0.099 4.099 13 C -0.105 4.105 14 H 0.076 0.924 15 C 0.134 3.866 16 N -0.720 5.720 17 C 0.568 3.432 18 O -0.555 6.555 19 C -0.178 4.178 20 C -0.215 4.215 21 S 0.311 5.689 22 C -0.230 4.230 23 C -0.034 4.034 24 Cl -0.036 7.036 25 C 0.131 3.869 26 H 0.262 0.738 27 H 0.053 0.947 28 H 0.030 0.970 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.404 0.596 36 H 0.184 0.816 37 H 0.207 0.793 38 H 0.052 0.948 39 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.861 5.526 -15.103 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.219 4.219 3 Si 0.763 3.237 4 H -0.193 1.193 5 H -0.242 1.242 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.073 0.927 9 N -0.344 5.344 10 C 0.012 3.988 11 C -0.163 4.163 12 C -0.137 4.137 13 C -0.126 4.126 14 H 0.094 0.906 15 C 0.010 3.990 16 N -0.372 5.372 17 C 0.355 3.645 18 O -0.435 6.435 19 C -0.197 4.197 20 C -0.354 4.354 21 S 0.577 5.423 22 C -0.366 4.366 23 C -0.072 4.072 24 Cl -0.007 7.007 25 C 0.006 3.994 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.240 0.760 36 H 0.201 0.799 37 H 0.224 0.776 38 H 0.070 0.930 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 5.178 6.057 -15.415 17.353 hybrid contribution 1.200 0.434 0.768 1.489 sum 6.378 6.491 -14.647 17.244 Atomic orbital electron populations 1.69945 1.07045 1.27101 1.55530 1.25735 0.95648 1.00014 1.00458 0.86138 0.78330 0.81177 0.78020 1.19271 1.24213 1.20086 1.18909 0.86753 0.93632 1.38495 0.92747 1.44495 1.07922 1.34805 1.47220 1.21181 0.91925 0.90550 0.95123 1.21885 0.99875 0.97720 0.96807 1.21379 0.96325 0.96428 0.99554 1.21795 0.98897 0.96643 0.95248 0.90559 1.21418 0.89801 0.91993 0.95792 1.45986 1.11745 1.35258 1.44213 1.17775 0.87927 0.79933 0.78911 1.90792 1.19820 1.70207 1.62713 1.19948 0.93535 1.01744 1.04435 1.26013 0.97313 1.06353 1.05707 1.82998 1.04576 1.22632 1.32118 1.25873 0.94834 1.07550 1.08307 1.20712 0.88458 0.98156 0.99920 1.98375 1.21711 1.92353 1.88306 1.21363 0.96415 0.91667 0.89941 0.92841 0.92797 0.95187 0.92717 0.89294 0.91643 0.89677 0.92067 0.89983 0.76013 0.79912 0.77570 0.93012 0.96108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.88 13.97 21.65 0.30 -56.58 16 2 C -0.02 -1.30 5.23 84.86 0.44 -0.86 16 3 Si 0.93 45.15 24.34 68.60 1.67 46.82 16 4 H -0.27 -11.74 6.62 99.48 0.66 -11.08 16 5 H -0.31 -15.57 7.11 99.48 0.71 -14.87 16 6 H -0.28 -13.37 6.64 99.48 0.66 -12.71 16 7 C -0.25 -13.57 10.03 84.03 0.84 -12.73 16 8 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 9 N -0.62 -27.96 2.77 -699.15 -1.94 -29.89 16 10 C 0.14 5.02 6.52 86.37 0.56 5.58 16 11 C -0.12 -3.48 6.08 30.67 0.19 -3.29 16 12 C -0.10 -2.57 5.17 30.62 0.16 -2.41 16 13 C -0.11 -3.24 2.37 -10.72 -0.03 -3.27 16 14 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 15 C 0.13 3.86 5.07 86.38 0.44 4.30 16 16 N -0.72 -21.79 5.30 -466.62 -2.47 -24.26 16 17 C 0.57 18.36 7.79 86.59 0.67 19.03 16 18 O -0.56 -20.63 15.05 -4.18 -0.06 -20.69 16 19 C -0.18 -4.90 5.98 -19.86 -0.12 -5.02 16 20 C -0.21 -4.83 10.38 67.31 0.70 -4.13 16 21 S 0.31 4.84 23.02 -56.49 -1.30 3.54 16 22 C -0.23 -3.98 11.00 66.64 0.73 -3.25 16 23 C -0.03 -0.85 6.49 22.68 0.15 -0.71 16 24 Cl -0.04 -0.97 27.24 -2.72 -0.07 -1.04 16 25 C 0.13 5.24 3.29 86.35 0.28 5.53 16 26 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 27 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.40 11.78 6.20 -92.71 -0.57 11.20 16 36 H 0.18 3.91 7.01 -2.91 -0.02 3.89 16 37 H 0.21 2.27 8.06 -2.91 -0.02 2.24 16 38 H 0.05 2.23 3.71 -2.38 -0.01 2.22 16 39 H 0.02 0.86 7.07 -2.39 -0.02 0.85 16 Total: -1.00 -69.36 338.96 1.57 -67.79 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.41 Total: 15.54 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 5.03 Total: -1.23 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -4.11 Total: -110.73 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.06 Total: -20.69 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.67 Total: 46.82 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.30 Total: 3.54 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.07 Total: -1.04 kcal Total: -69.36 1.57 -67.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602897135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.201 kcal (2) G-P(sol) polarization free energy of solvation -69.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds