Wall clock time and date at job start Tue Mar 31 2020 14:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99593 * 2 1 4 4 C 1.53007 * 109.47127 * 124.99827 * 3 2 1 5 5 O 1.42898 * 109.46765 * 179.97438 * 4 3 2 6 6 C 1.42900 * 113.99575 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47361 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99482 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.38892 * 119.99668 * 180.27660 * 9 7 6 11 11 N 1.29946 * 125.36003 * 179.72060 * 10 9 7 12 12 C 1.31593 * 117.13738 * 179.97438 * 11 10 9 13 13 C 1.50698 * 122.23344 * 179.97438 * 12 11 10 14 14 C 1.34660 * 115.53858 * 0.02562 * 12 11 10 15 15 S 1.76199 * 125.93193 * 179.97438 * 14 12 11 16 16 C 1.76192 * 99.99981 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00141 * 0.02562 * 16 15 14 18 18 C 1.38437 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31813 * 119.99414 * 359.97438 * 18 16 15 20 20 Si 1.86789 * 120.00160 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47346 * 59.99618 * 20 18 16 22 22 H 1.48498 * 109.47399 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47307 * 299.99902 * 20 18 16 24 24 S 1.76140 * 125.36676 * 359.41382 * 10 9 7 25 25 H 1.07997 * 120.00129 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99648 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00129 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47636 * 4.99775 * 3 2 1 29 29 H 1.09002 * 109.47133 * 244.99226 * 3 2 1 30 30 H 1.09001 * 109.46905 * 59.99500 * 4 3 2 31 31 H 1.08994 * 109.46778 * 299.99985 * 4 3 2 32 32 H 1.08998 * 109.47421 * 59.99896 * 6 5 4 33 33 H 1.09002 * 109.47461 * 300.00159 * 6 5 4 34 34 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.47133 * 90.02633 * 13 12 11 36 36 H 1.09000 * 109.47697 * 210.02776 * 13 12 11 37 37 H 1.09005 * 109.46895 * 330.03461 * 13 12 11 38 38 H 0.97004 * 119.99148 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 8 3.7497 2.5706 1.1813 6 6 4.6892 2.6993 2.2503 7 6 5.3812 4.0346 2.1529 8 8 5.0980 4.8003 1.2559 9 7 6.3154 4.3774 3.0619 10 6 6.9490 5.6103 2.9753 11 7 7.8575 6.0482 3.7948 12 6 8.3515 7.2449 3.5595 13 6 9.4090 7.8646 4.4363 14 6 7.8483 7.8795 2.4836 15 16 8.3098 9.4837 1.9198 16 6 7.2604 9.6268 0.5118 17 1 6.5915 8.8195 0.2526 18 6 7.2933 10.7740 -0.2624 19 7 8.1094 11.7595 0.0543 20 14 6.1812 10.9254 -1.7555 21 1 4.7626 10.8210 -1.3289 22 1 6.4057 12.2400 -2.4087 23 1 6.4907 9.8358 -2.7158 24 16 6.6531 6.8236 1.7332 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4026 -0.9313 30 1 3.7399 0.5067 1.0922 31 1 2.4771 1.2357 2.1130 32 1 5.4282 1.9010 2.1828 33 1 4.1661 2.6304 3.2041 34 1 6.5421 3.7648 3.7790 35 1 10.3961 7.5965 4.0596 36 1 9.2989 8.9490 4.4274 37 1 9.2970 7.4963 5.4561 38 1 8.1326 12.5632 -0.4883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604437627.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:51 Heat of formation + Delta-G solvation = -26.704452 kcal Electronic energy + Delta-G solvation = -21820.768314 eV Core-core repulsion = 18302.880662 eV Total energy + Delta-G solvation = -3517.887652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.20295 -38.66995 -38.00649 -35.35139 -34.73810 -32.80342 -30.88722 -30.06838 -27.95284 -27.02288 -25.74624 -23.56735 -23.22705 -21.18115 -20.25166 -19.69812 -18.15183 -17.77120 -16.96841 -16.87141 -16.49824 -15.71814 -15.64267 -15.17428 -15.08119 -14.84447 -14.15237 -14.04835 -13.62325 -13.43759 -13.18134 -12.86675 -12.66232 -12.10102 -11.89824 -11.87672 -11.57264 -11.47489 -11.38178 -11.22540 -11.05154 -10.76681 -10.57490 -10.26000 -10.06758 -9.83905 -9.76113 -9.50963 -9.06775 -8.73887 -8.64735 -7.79433 -6.58240 -6.49211 -4.26085 1.38892 1.80650 1.88965 2.42575 2.44474 2.62601 3.09761 3.15003 3.17258 3.35393 3.61902 3.64592 4.00367 4.45023 4.55278 4.68625 4.71899 4.79147 4.84441 4.87013 4.95145 5.03853 5.05146 5.21585 5.44094 5.57596 5.66726 5.98608 6.13256 6.21270 6.23984 6.33605 6.44730 6.48740 6.68214 6.96135 7.18857 7.35014 7.96311 8.06008 8.51631 8.90310 10.47382 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.002948 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.862552 B = 9495.881039 C =11682.207256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.155 4.155 3 C -0.095 4.095 4 C 0.066 3.934 5 O -0.362 6.362 6 C 0.057 3.943 7 C 0.503 3.497 8 O -0.482 6.482 9 N -0.615 5.615 10 C 0.187 3.813 11 N -0.474 5.474 12 C 0.018 3.982 13 C -0.061 4.061 14 C -0.251 4.251 15 S 0.151 5.849 16 C -0.557 4.557 17 H 0.088 0.912 18 C 0.082 3.918 19 N -0.863 5.863 20 Si 0.925 3.075 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.267 1.267 24 S 0.202 5.798 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.414 0.586 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.080 -20.516 4.888 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.173 4.173 3 C -0.132 4.132 4 C -0.011 4.011 5 O -0.280 6.280 6 C -0.023 4.023 7 C 0.287 3.713 8 O -0.354 6.354 9 N -0.266 5.266 10 C -0.184 4.184 11 N -0.196 5.196 12 C -0.125 4.125 13 C -0.120 4.120 14 C -0.488 4.488 15 S 0.402 5.598 16 C -0.706 4.706 17 H 0.106 0.894 18 C -0.129 4.129 19 N -0.496 5.496 20 Si 0.749 3.251 21 H -0.192 1.192 22 H -0.204 1.204 23 H -0.192 1.192 24 S 0.446 5.554 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.128 0.872 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.252 0.748 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.968 -18.949 3.902 20.923 hybrid contribution -0.770 -1.121 -0.198 1.374 sum -8.738 -20.070 3.704 22.200 Atomic orbital electron populations 1.23931 0.95917 1.02133 1.00415 1.22792 0.96015 0.97919 1.00535 1.20652 0.97991 0.95999 0.98560 1.22514 0.93997 0.85798 0.98760 1.88018 1.54152 1.37701 1.48117 1.21984 0.93360 0.94439 0.92498 1.20434 0.79751 0.89188 0.81930 1.90746 1.61225 1.51112 1.32334 1.42191 1.38369 1.15371 1.30622 1.23692 1.01107 0.93056 1.00528 1.65800 1.10686 1.14734 1.28343 1.19024 1.04538 0.90289 0.98600 1.20114 0.94969 0.99744 0.97206 1.28789 1.06716 1.08936 1.04342 1.83049 1.46685 1.01728 1.28388 1.23229 1.27222 1.06723 1.13393 0.89367 1.25028 0.95546 0.94114 0.98190 1.70010 1.34732 1.06104 1.38760 0.86079 0.80460 0.77949 0.80571 1.19182 1.20391 1.19175 1.85912 1.37966 1.05197 1.26352 0.88315 0.88296 0.87165 0.90319 0.89765 0.92847 0.92854 0.89624 0.89638 0.74843 0.91885 0.91044 0.91947 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.15 14.32 29.01 0.42 -0.74 16 2 C -0.15 -1.00 9.52 -36.03 -0.34 -1.34 16 3 C -0.09 -0.76 6.03 -27.88 -0.17 -0.92 16 4 C 0.07 0.52 5.92 37.16 0.22 0.74 16 5 O -0.36 -4.24 9.88 -55.14 -0.54 -4.79 16 6 C 0.06 0.53 6.42 36.01 0.23 0.76 16 7 C 0.50 7.23 7.87 -10.98 -0.09 7.15 16 8 O -0.48 -9.35 14.02 -14.36 -0.20 -9.55 16 9 N -0.61 -8.71 5.40 -11.78 -0.06 -8.77 16 10 C 0.19 3.59 8.40 -87.19 -0.73 2.86 16 11 N -0.47 -9.48 10.55 -9.78 -0.10 -9.58 16 12 C 0.02 0.38 6.73 -83.96 -0.57 -0.18 16 13 C -0.06 -1.06 10.02 36.00 0.36 -0.70 16 14 C -0.25 -5.85 6.67 29.47 0.20 -5.65 16 15 S 0.15 3.82 20.74 -107.50 -2.23 1.59 16 16 C -0.56 -15.34 9.26 30.81 0.29 -15.06 16 17 H 0.09 2.42 5.97 -52.49 -0.31 2.11 16 18 C 0.08 2.22 5.49 -17.49 -0.10 2.12 16 19 N -0.86 -23.93 13.22 55.47 0.73 -23.20 16 20 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 S 0.20 4.53 18.35 -107.50 -1.97 2.56 16 25 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 26 H 0.10 0.48 8.06 -52.48 -0.42 0.06 16 27 H 0.11 0.57 8.06 -52.49 -0.42 0.15 16 28 H 0.08 0.68 7.79 -51.93 -0.40 0.28 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.41 4.14 8.82 -40.82 -0.36 3.78 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.25 7.37 -51.93 -0.38 0.87 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.28 7.16 8.32 -40.82 -0.34 6.82 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -33.38 358.90 -9.09 -42.47 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.81 Total: -1.13 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -0.28 Total: -10.97 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.57 Total: -41.55 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.75 Total: -14.34 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 8.35 SS G_CDS: -4.20 Total: 4.15 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.38 -9.09 -42.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604437627.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.767 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds