Wall clock time and date at job start Tue Mar 31 2020 14:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99593 * 2 1 4 4 C 1.53007 * 109.47127 * 124.99827 * 3 2 1 5 5 O 1.42898 * 109.46765 * 179.97438 * 4 3 2 6 6 C 1.42900 * 113.99575 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47361 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99482 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.38892 * 119.99668 * 180.27660 * 9 7 6 11 11 N 1.29946 * 125.36003 * 179.72060 * 10 9 7 12 12 C 1.31593 * 117.13738 * 179.97438 * 11 10 9 13 13 C 1.50698 * 122.23344 * 179.97438 * 12 11 10 14 14 C 1.34660 * 115.53858 * 0.02562 * 12 11 10 15 15 S 1.76199 * 125.93193 * 179.97438 * 14 12 11 16 16 C 1.76192 * 99.99981 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00141 * 0.02562 * 16 15 14 18 18 C 1.38437 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31813 * 119.99414 * 359.97438 * 18 16 15 20 20 Si 1.86789 * 120.00160 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47346 * 59.99618 * 20 18 16 22 22 H 1.48498 * 109.47399 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47307 * 299.99902 * 20 18 16 24 24 S 1.76140 * 125.36676 * 359.41382 * 10 9 7 25 25 H 1.07997 * 120.00129 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99648 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00129 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47636 * 4.99775 * 3 2 1 29 29 H 1.09002 * 109.47133 * 244.99226 * 3 2 1 30 30 H 1.09001 * 109.46905 * 59.99500 * 4 3 2 31 31 H 1.08994 * 109.46778 * 299.99985 * 4 3 2 32 32 H 1.08998 * 109.47421 * 59.99896 * 6 5 4 33 33 H 1.09002 * 109.47461 * 300.00159 * 6 5 4 34 34 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.47133 * 90.02633 * 13 12 11 36 36 H 1.09000 * 109.47697 * 210.02776 * 13 12 11 37 37 H 1.09005 * 109.46895 * 330.03461 * 13 12 11 38 38 H 0.97004 * 119.99148 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 8 3.7497 2.5706 1.1813 6 6 4.6892 2.6993 2.2503 7 6 5.3812 4.0346 2.1529 8 8 5.0980 4.8003 1.2559 9 7 6.3154 4.3774 3.0619 10 6 6.9490 5.6103 2.9753 11 7 7.8575 6.0482 3.7948 12 6 8.3515 7.2449 3.5595 13 6 9.4090 7.8646 4.4363 14 6 7.8483 7.8795 2.4836 15 16 8.3098 9.4837 1.9198 16 6 7.2604 9.6268 0.5118 17 1 6.5915 8.8195 0.2526 18 6 7.2933 10.7740 -0.2624 19 7 8.1094 11.7595 0.0543 20 14 6.1812 10.9254 -1.7555 21 1 4.7626 10.8210 -1.3289 22 1 6.4057 12.2400 -2.4087 23 1 6.4907 9.8358 -2.7158 24 16 6.6531 6.8236 1.7332 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4026 -0.9313 30 1 3.7399 0.5067 1.0922 31 1 2.4771 1.2357 2.1130 32 1 5.4282 1.9010 2.1828 33 1 4.1661 2.6304 3.2041 34 1 6.5421 3.7648 3.7790 35 1 10.3961 7.5965 4.0596 36 1 9.2989 8.9490 4.4274 37 1 9.2970 7.4963 5.4561 38 1 8.1326 12.5632 -0.4883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604437627.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:51 Heat of formation + Delta-G solvation = -48.255691 kcal Electronic energy + Delta-G solvation = -21821.702845 eV Core-core repulsion = 18302.880662 eV Total energy + Delta-G solvation = -3518.822184 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46950 -40.18659 -38.88405 -36.16614 -35.88762 -34.81891 -32.27384 -30.83551 -28.95126 -28.59677 -27.70759 -24.86430 -23.92315 -22.54435 -21.37202 -20.67844 -19.84204 -19.21484 -18.22874 -17.71223 -17.61609 -17.08944 -17.03954 -16.58722 -16.36567 -15.87361 -15.57422 -15.32344 -14.94073 -14.39198 -14.37038 -14.27909 -13.62435 -13.42525 -13.38127 -13.27424 -13.07695 -12.88073 -12.58976 -12.30296 -12.16180 -12.13108 -12.04265 -11.97241 -11.34733 -11.28353 -10.79609 -10.70904 -10.48658 -10.47506 -10.26620 -9.53550 -8.57977 -8.37201 -6.30107 -0.23806 0.21569 0.82571 1.17285 1.23242 1.27106 1.35184 1.39112 1.43680 1.59682 2.00929 2.14139 2.81076 2.82313 3.08985 3.44551 3.78156 4.00932 4.12714 4.17597 4.22990 4.29326 4.43795 4.45880 4.51327 4.69217 4.85878 4.91090 4.97090 5.03626 5.05259 5.10129 5.29086 5.47462 5.73015 5.83115 5.88655 6.01566 6.16480 6.77860 6.86639 6.86863 8.49452 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.002948 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.862552 B = 9495.881039 C =11682.207256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C -0.098 4.098 4 C 0.065 3.935 5 O -0.403 6.403 6 C 0.065 3.935 7 C 0.500 3.500 8 O -0.533 6.533 9 N -0.599 5.599 10 C 0.229 3.771 11 N -0.479 5.479 12 C 0.037 3.963 13 C -0.062 4.062 14 C -0.282 4.282 15 S 0.102 5.898 16 C -0.577 4.577 17 H 0.079 0.921 18 C 0.036 3.964 19 N -0.894 5.894 20 Si 0.984 3.016 21 H -0.266 1.266 22 H -0.262 1.262 23 H -0.266 1.266 24 S 0.149 5.851 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.440 0.560 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.780 -23.966 6.249 26.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.175 4.175 3 C -0.135 4.135 4 C -0.011 4.011 5 O -0.322 6.322 6 C -0.014 4.014 7 C 0.288 3.712 8 O -0.408 6.408 9 N -0.253 5.253 10 C -0.144 4.144 11 N -0.201 5.201 12 C -0.104 4.104 13 C -0.121 4.121 14 C -0.517 4.517 15 S 0.350 5.650 16 C -0.726 4.726 17 H 0.097 0.903 18 C -0.172 4.172 19 N -0.529 5.529 20 Si 0.805 3.195 21 H -0.191 1.191 22 H -0.186 1.186 23 H -0.191 1.191 24 S 0.394 5.606 25 H 0.111 0.889 26 H 0.132 0.868 27 H 0.145 0.855 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.282 0.718 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.675 -22.473 5.309 24.667 hybrid contribution -0.644 -0.412 -0.466 0.895 sum -9.319 -22.885 4.843 25.180 Atomic orbital electron populations 1.24085 0.96045 1.02647 0.99954 1.22827 0.96078 0.97704 1.00902 1.20664 0.97931 0.96442 0.98502 1.22678 0.94257 0.84970 0.99164 1.87970 1.55065 1.39821 1.49353 1.22195 0.94124 0.91470 0.93643 1.21701 0.78653 0.90549 0.80338 1.90745 1.62531 1.53046 1.34437 1.42355 1.37693 1.13662 1.31572 1.24056 0.98887 0.93724 0.97765 1.66031 1.11446 1.14342 1.28279 1.19720 1.03364 0.90020 0.97340 1.20249 0.94494 0.99417 0.97965 1.28594 1.08655 1.08497 1.05948 1.82835 1.48505 1.04416 1.29273 1.23412 1.27706 1.06933 1.14517 0.90316 1.25868 0.96862 0.93696 1.00737 1.70086 1.36125 1.06631 1.40011 0.85205 0.78484 0.78525 0.77295 1.19082 1.18646 1.19055 1.86170 1.38820 1.07147 1.28468 0.88885 0.86814 0.85480 0.91913 0.91001 0.90568 0.91150 0.85459 0.85623 0.71782 0.90278 0.91411 0.89359 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 14.32 67.78 0.97 -1.06 16 2 C -0.16 -1.73 9.52 25.64 0.24 -1.48 16 3 C -0.10 -1.45 6.03 29.85 0.18 -1.27 16 4 C 0.06 0.83 5.92 71.98 0.43 1.25 16 5 O -0.40 -8.44 9.88 -129.94 -1.28 -9.72 16 6 C 0.06 0.92 6.42 71.24 0.46 1.38 16 7 C 0.50 13.12 7.87 87.66 0.69 13.81 16 8 O -0.53 -20.42 14.02 15.97 0.22 -20.19 16 9 N -0.60 -15.06 5.40 -309.56 -1.67 -16.73 16 10 C 0.23 8.39 8.40 179.15 1.50 9.90 16 11 N -0.48 -18.12 10.55 -184.87 -1.95 -20.07 16 12 C 0.04 1.53 6.73 41.77 0.28 1.81 16 13 C -0.06 -2.07 10.02 71.24 0.71 -1.36 16 14 C -0.28 -13.40 6.67 67.00 0.45 -12.95 16 15 S 0.10 5.40 20.74 -56.49 -1.17 4.23 16 16 C -0.58 -33.26 9.26 67.87 0.63 -32.63 16 17 H 0.08 4.55 5.97 -2.91 -0.02 4.53 16 18 C 0.04 1.99 5.49 84.74 0.46 2.46 16 19 N -0.89 -51.19 13.22 21.59 0.29 -50.91 16 20 Si 0.98 44.09 29.55 68.60 2.03 46.11 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 S 0.15 6.83 18.35 -56.49 -1.04 5.80 16 25 H 0.09 1.07 7.84 -2.91 -0.02 1.05 16 26 H 0.11 0.86 8.06 -2.91 -0.02 0.84 16 27 H 0.13 0.96 8.06 -2.91 -0.02 0.93 16 28 H 0.06 1.09 7.79 -2.39 -0.02 1.07 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.44 6.74 8.82 -92.71 -0.82 5.93 16 35 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 36 H 0.07 2.35 7.37 -2.39 -0.02 2.33 16 37 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 38 H 0.28 14.90 8.32 -92.71 -0.77 14.13 16 Total: -1.00 -76.81 358.90 2.70 -74.11 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.27 Total: 7.52 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 7.01 Total: -20.15 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -3.34 Total: -87.71 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.06 Total: -29.91 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 12.24 SS G_CDS: -2.21 Total: 10.03 kcal Total: -76.81 2.70 -74.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604437627.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.851 kcal (2) G-P(sol) polarization free energy of solvation -76.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds