Wall clock time and date at job start Tue Mar 31 2020 15:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00148 * 2 1 4 4 H 1.48497 * 109.47243 * 239.99604 * 3 2 1 5 5 H 1.48495 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47148 * 120.00150 * 3 2 1 7 7 C 1.37879 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99831 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00218 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47274 * 180.02562 * 9 7 2 11 11 C 1.36406 * 125.85161 * 275.15681 * 10 9 7 12 12 C 1.35042 * 108.93600 * 180.26792 * 11 10 9 13 13 C 1.41132 * 108.24066 * 359.75182 * 12 11 10 14 14 N 1.33004 * 126.37569 * 180.02562 * 13 12 11 15 15 C 1.33802 * 119.99913 * 359.95920 * 14 13 12 16 16 O 1.21889 * 119.99637 * 359.97438 * 15 14 13 17 17 C 1.47876 * 119.99912 * 180.02562 * 15 14 13 18 18 C 1.40029 * 120.58186 * 359.97438 * 17 15 14 19 19 N 1.30635 * 121.18757 * 179.97438 * 18 17 15 20 20 C 1.34878 * 122.43528 * 0.02562 * 19 18 17 21 21 C 1.40661 * 128.48347 * 179.97438 * 20 19 18 22 22 C 1.32252 * 115.90802 * 179.97438 * 21 20 19 23 23 S 1.75503 * 110.83901 * 0.02562 * 22 21 20 24 24 C 1.40069 * 119.25352 * 359.97438 * 20 19 18 25 25 C 1.39406 * 119.74442 * 359.74594 * 24 20 19 26 26 N 1.37431 * 107.25129 * 359.97438 * 13 12 11 27 27 H 0.97001 * 126.36000 * 179.97438 * 26 13 12 28 28 H 0.96997 * 119.99570 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47109 * 60.00038 * 9 7 2 30 30 H 1.08997 * 109.47136 * 299.99951 * 9 7 2 31 31 H 1.08003 * 125.53509 * 0.04271 * 11 10 9 32 32 H 1.07997 * 125.87945 * 179.78773 * 12 11 10 33 33 H 1.07999 * 119.40213 * 359.97438 * 18 17 15 34 34 H 1.08008 * 122.04708 * 0.02562 * 21 20 19 35 35 H 1.07998 * 124.57757 * 180.02562 * 22 21 20 36 36 H 1.08003 * 120.73364 * 180.27639 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 2.7986 -4.1559 -1.0987 12 6 3.6065 -5.1645 -0.7068 13 6 3.5316 -5.2699 0.6986 14 7 4.1834 -6.1444 1.4599 15 6 5.0052 -7.0384 0.8981 16 8 5.1562 -7.0517 -0.3113 17 6 5.7294 -8.0110 1.7445 18 6 5.5646 -8.0069 3.1350 19 7 6.1981 -8.8609 3.8939 20 6 7.0401 -9.7879 3.3930 21 6 7.7827 -10.7612 4.0857 22 6 8.5368 -11.5516 3.3401 23 16 8.3849 -11.1386 1.6412 24 6 7.2496 -9.8459 2.0093 25 6 6.5844 -8.9525 1.1710 26 7 2.6607 -4.3001 1.1342 27 1 2.4064 -4.1268 2.0541 28 1 -0.4849 0.8401 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.6458 -3.8341 -2.1183 32 1 4.2070 -5.7835 -1.3569 33 1 4.9018 -7.2846 3.5882 34 1 7.7391 -10.8578 5.1605 35 1 9.1616 -12.3440 3.7249 36 1 6.7307 -8.9859 0.1014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610230815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:49 Heat of formation + Delta-G solvation = 126.557267 kcal Electronic energy + Delta-G solvation = -23125.150185 eV Core-core repulsion = 19510.757260 eV Total energy + Delta-G solvation = -3614.392925 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.99690 -40.40648 -38.42088 -35.69395 -34.38638 -33.11779 -32.39315 -31.21935 -30.98315 -29.79517 -26.91318 -25.10937 -23.90947 -23.18774 -22.03832 -21.45298 -21.11522 -19.72096 -17.98800 -17.16668 -16.94942 -16.70505 -16.07657 -15.64297 -15.26538 -15.02069 -14.97741 -14.60757 -14.28709 -14.18168 -13.65558 -13.47338 -13.12543 -12.96036 -12.70080 -12.63920 -12.54216 -12.07020 -11.74302 -11.43137 -11.27705 -11.09405 -10.60812 -10.55026 -10.42628 -9.96775 -9.69452 -9.27479 -9.18202 -8.97550 -8.76060 -8.58418 -8.14941 -7.11153 -6.57102 -4.72616 0.16240 1.07604 1.23057 1.47708 1.68285 1.91638 2.02451 2.92164 3.03768 3.09824 3.12855 3.65914 3.95457 4.03024 4.09960 4.49562 4.52465 4.59710 4.75471 4.92539 4.98840 5.12843 5.27541 5.34546 5.53383 5.66956 5.71981 5.83169 5.89447 6.06659 6.37721 6.41731 6.46399 6.55022 6.63571 7.28274 7.33627 7.43469 7.47613 7.78526 7.84064 8.09305 8.35539 8.98494 9.12188 10.46346 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.031427 B = 0.002048 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.750708 B =13670.165448 C =13920.387454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.071 3.929 3 Si 0.911 3.089 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.561 4.561 8 H 0.070 0.930 9 C 0.253 3.747 10 N -0.336 5.336 11 C 0.165 3.835 12 C -0.332 4.332 13 C 0.470 3.530 14 N -0.692 5.692 15 C 0.538 3.462 16 O -0.577 6.577 17 C -0.131 4.131 18 C 0.177 3.823 19 N -0.472 5.472 20 C 0.131 3.869 21 C -0.114 4.114 22 C -0.174 4.174 23 S 0.104 5.896 24 C -0.208 4.208 25 C 0.008 3.992 26 N -0.463 5.463 27 H 0.447 0.553 28 H 0.273 0.727 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.190 0.810 32 H 0.184 0.816 33 H 0.181 0.819 34 H 0.152 0.848 35 H 0.175 0.825 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.861 -16.214 3.071 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.599 4.599 8 H 0.088 0.912 9 C 0.137 3.863 10 N -0.121 5.121 11 C 0.019 3.981 12 C -0.364 4.364 13 C 0.221 3.779 14 N -0.456 5.456 15 C 0.324 3.676 16 O -0.460 6.460 17 C -0.139 4.139 18 C 0.006 3.994 19 N -0.181 5.181 20 C -0.002 4.002 21 C -0.145 4.145 22 C -0.311 4.311 23 S 0.366 5.634 24 C -0.325 4.325 25 C -0.023 4.023 26 N -0.184 5.184 27 H 0.295 0.705 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.207 0.793 32 H 0.201 0.799 33 H 0.198 0.802 34 H 0.169 0.831 35 H 0.192 0.808 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.023 -16.504 3.046 19.548 hybrid contribution -0.144 1.618 0.230 1.641 sum 9.879 -14.886 3.276 18.164 Atomic orbital electron populations 1.69883 1.06142 1.28526 1.47617 1.24956 0.95034 0.99775 0.93689 0.86326 0.79434 0.81288 0.79239 1.19643 1.20763 1.19801 1.21347 0.94044 0.89443 1.55092 0.91210 1.20131 0.85578 0.79718 1.00912 1.48162 1.38893 1.28581 0.96419 1.22911 0.91022 0.91917 0.92276 1.22467 1.11883 1.06899 0.95119 1.19068 0.84180 0.84745 0.89896 1.68695 1.24552 1.15479 1.36913 1.18456 0.80919 0.82688 0.85554 1.90624 1.65739 1.72978 1.16620 1.20825 0.99569 0.97878 0.95673 1.23168 0.93353 0.93375 0.89480 1.67693 1.07023 1.03705 1.39656 1.19263 0.96269 0.95637 0.89045 1.19648 0.97818 0.95260 1.01774 1.25319 1.04733 1.04600 0.96420 1.84217 1.43860 1.29473 1.05850 1.23476 1.06414 1.04313 0.98282 1.20996 0.91016 0.90060 1.00189 1.44622 1.41313 1.28742 1.03735 0.70541 0.91695 0.91176 0.92885 0.79281 0.79859 0.80242 0.83089 0.80806 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.91 13.29 55.43 0.74 -21.17 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 18.83 29.54 -169.99 -5.02 13.81 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.56 -12.86 9.39 -34.44 -0.32 -13.18 16 8 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.25 5.00 6.19 -5.20 -0.03 4.97 16 10 N -0.34 -5.83 3.63 -62.24 -0.23 -6.06 16 11 C 0.17 2.59 11.45 -16.65 -0.19 2.40 16 12 C -0.33 -5.76 9.52 -39.62 -0.38 -6.14 16 13 C 0.47 8.51 8.07 -155.25 -1.25 7.25 16 14 N -0.69 -12.71 9.69 -12.22 -0.12 -12.83 16 15 C 0.54 10.05 7.69 -12.75 -0.10 9.95 16 16 O -0.58 -11.67 13.34 5.02 0.07 -11.61 16 17 C -0.13 -2.13 5.89 -104.81 -0.62 -2.75 16 18 C 0.18 2.69 10.74 -17.39 -0.19 2.50 16 19 N -0.47 -7.11 10.39 -11.03 -0.11 -7.23 16 20 C 0.13 1.81 6.97 -84.93 -0.59 1.21 16 21 C -0.11 -1.19 10.16 -40.59 -0.41 -1.60 16 22 C -0.17 -1.46 11.08 28.81 0.32 -1.14 16 23 S 0.10 1.03 23.29 -107.50 -2.50 -1.47 16 24 C -0.21 -2.78 6.49 -38.46 -0.25 -3.03 16 25 C 0.01 0.12 9.73 -38.67 -0.38 -0.26 16 26 N -0.46 -7.68 7.38 31.33 0.23 -7.45 16 27 H 0.45 6.46 8.96 -182.55 -1.64 4.82 16 28 H 0.27 6.47 8.31 -40.82 -0.34 6.14 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.19 2.30 8.06 -52.48 -0.42 1.87 16 32 H 0.18 3.33 5.77 -52.49 -0.30 3.02 16 33 H 0.18 2.54 7.55 -52.49 -0.40 2.15 16 34 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 35 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.15 2.06 7.72 -52.48 -0.41 1.65 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -28.46 337.27 -10.75 -39.21 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -4.40 Total: 7.94 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -4.49 Total: 1.78 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.51 Total: -54.74 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.07 Total: -11.61 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.50 Total: -1.47 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.46 -10.75 -39.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610230815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.771 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds