Wall clock time and date at job start Tue Mar 31 2020 15:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00148 * 2 1 4 4 H 1.48497 * 109.47243 * 239.99604 * 3 2 1 5 5 H 1.48495 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47148 * 120.00150 * 3 2 1 7 7 C 1.37879 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99831 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00218 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47274 * 180.02562 * 9 7 2 11 11 C 1.36406 * 125.85161 * 275.15681 * 10 9 7 12 12 C 1.35042 * 108.93600 * 180.26792 * 11 10 9 13 13 C 1.41132 * 108.24066 * 359.75182 * 12 11 10 14 14 N 1.33004 * 126.37569 * 180.02562 * 13 12 11 15 15 C 1.33802 * 119.99913 * 359.95920 * 14 13 12 16 16 O 1.21889 * 119.99637 * 359.97438 * 15 14 13 17 17 C 1.47876 * 119.99912 * 180.02562 * 15 14 13 18 18 C 1.40029 * 120.58186 * 359.97438 * 17 15 14 19 19 N 1.30635 * 121.18757 * 179.97438 * 18 17 15 20 20 C 1.34878 * 122.43528 * 0.02562 * 19 18 17 21 21 C 1.40661 * 128.48347 * 179.97438 * 20 19 18 22 22 C 1.32252 * 115.90802 * 179.97438 * 21 20 19 23 23 S 1.75503 * 110.83901 * 0.02562 * 22 21 20 24 24 C 1.40069 * 119.25352 * 359.97438 * 20 19 18 25 25 C 1.39406 * 119.74442 * 359.74594 * 24 20 19 26 26 N 1.37431 * 107.25129 * 359.97438 * 13 12 11 27 27 H 0.97001 * 126.36000 * 179.97438 * 26 13 12 28 28 H 0.96997 * 119.99570 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47109 * 60.00038 * 9 7 2 30 30 H 1.08997 * 109.47136 * 299.99951 * 9 7 2 31 31 H 1.08003 * 125.53509 * 0.04271 * 11 10 9 32 32 H 1.07997 * 125.87945 * 179.78773 * 12 11 10 33 33 H 1.07999 * 119.40213 * 359.97438 * 18 17 15 34 34 H 1.08008 * 122.04708 * 0.02562 * 21 20 19 35 35 H 1.07998 * 124.57757 * 180.02562 * 22 21 20 36 36 H 1.08003 * 120.73364 * 180.27639 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 2.7986 -4.1559 -1.0987 12 6 3.6065 -5.1645 -0.7068 13 6 3.5316 -5.2699 0.6986 14 7 4.1834 -6.1444 1.4599 15 6 5.0052 -7.0384 0.8981 16 8 5.1562 -7.0517 -0.3113 17 6 5.7294 -8.0110 1.7445 18 6 5.5646 -8.0069 3.1350 19 7 6.1981 -8.8609 3.8939 20 6 7.0401 -9.7879 3.3930 21 6 7.7827 -10.7612 4.0857 22 6 8.5368 -11.5516 3.3401 23 16 8.3849 -11.1386 1.6412 24 6 7.2496 -9.8459 2.0093 25 6 6.5844 -8.9525 1.1710 26 7 2.6607 -4.3001 1.1342 27 1 2.4064 -4.1268 2.0541 28 1 -0.4849 0.8401 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.6458 -3.8341 -2.1183 32 1 4.2070 -5.7835 -1.3569 33 1 4.9018 -7.2846 3.5882 34 1 7.7391 -10.8578 5.1605 35 1 9.1616 -12.3440 3.7249 36 1 6.7307 -8.9859 0.1014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610230815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:49 Heat of formation + Delta-G solvation = 109.755467 kcal Electronic energy + Delta-G solvation = -23125.878766 eV Core-core repulsion = 19510.757260 eV Total energy + Delta-G solvation = -3615.121506 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.37309 -41.48930 -39.77433 -36.64151 -35.96912 -34.70162 -33.52586 -32.57972 -32.45604 -30.90607 -28.48204 -26.25783 -25.12340 -24.60272 -23.27276 -22.76402 -22.18295 -20.98592 -19.14935 -18.79618 -18.28173 -17.87649 -17.19458 -16.86019 -16.64621 -16.47206 -16.36449 -15.82494 -15.67201 -15.03342 -15.01874 -14.66344 -14.40592 -14.25458 -14.22205 -13.78126 -13.63504 -13.57541 -13.10512 -12.73364 -12.68999 -12.31591 -12.12601 -12.06309 -11.51303 -11.27455 -11.25645 -10.77270 -10.55558 -10.45885 -10.02616 -9.78133 -9.00414 -8.62393 -8.29061 -6.56358 -0.87527 -0.02539 0.19267 0.35076 0.54782 0.86936 1.03187 1.39889 1.43034 1.49502 1.61309 2.30279 2.51084 2.66061 2.94700 3.09530 3.13398 3.30666 3.58848 3.85994 3.87980 4.09653 4.18299 4.30127 4.37991 4.47679 4.68357 4.77870 4.84816 4.90197 4.96683 5.10027 5.18335 5.23591 5.46530 5.50803 5.69486 5.92350 6.06720 6.37240 6.56825 6.70745 6.75598 7.17390 7.70875 8.65675 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.031427 B = 0.002048 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.750708 B =13670.165448 C =13920.387454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.031 3.969 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.567 4.567 8 H 0.061 0.939 9 C 0.266 3.734 10 N -0.341 5.341 11 C 0.181 3.819 12 C -0.343 4.343 13 C 0.455 3.545 14 N -0.698 5.698 15 C 0.531 3.469 16 O -0.603 6.603 17 C -0.159 4.159 18 C 0.176 3.824 19 N -0.488 5.488 20 C 0.123 3.877 21 C -0.140 4.140 22 C -0.140 4.140 23 S 0.138 5.862 24 C -0.233 4.233 25 C 0.010 3.990 26 N -0.458 5.458 27 H 0.454 0.546 28 H 0.274 0.726 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.227 0.773 32 H 0.177 0.823 33 H 0.181 0.819 34 H 0.171 0.829 35 H 0.220 0.780 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.461 -17.623 3.322 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.172 4.172 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.605 4.605 8 H 0.079 0.921 9 C 0.149 3.851 10 N -0.126 5.126 11 C 0.035 3.965 12 C -0.375 4.375 13 C 0.206 3.794 14 N -0.462 5.462 15 C 0.318 3.682 16 O -0.487 6.487 17 C -0.167 4.167 18 C 0.005 3.995 19 N -0.197 5.197 20 C -0.011 4.011 21 C -0.170 4.170 22 C -0.277 4.277 23 S 0.401 5.599 24 C -0.350 4.350 25 C -0.020 4.020 26 N -0.180 5.180 27 H 0.303 0.697 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.243 0.757 32 H 0.194 0.806 33 H 0.198 0.802 34 H 0.188 0.812 35 H 0.236 0.764 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.628 -17.923 3.306 21.619 hybrid contribution -0.510 1.875 0.167 1.950 sum 11.119 -16.048 3.473 19.830 Atomic orbital electron populations 1.69948 1.07082 1.29075 1.48824 1.25580 0.95623 1.02313 0.93663 0.85527 0.78330 0.78460 0.78962 1.19295 1.20579 1.20154 1.21566 0.93787 0.90838 1.54284 0.92123 1.19807 0.85417 0.79249 1.00651 1.48002 1.39039 1.28468 0.97079 1.23454 0.89267 0.90542 0.93226 1.22413 1.12596 1.07627 0.94822 1.19292 0.84495 0.85058 0.90554 1.68749 1.24704 1.15654 1.37069 1.18867 0.80819 0.82922 0.85611 1.90590 1.66734 1.73835 1.17552 1.20668 1.01308 0.98849 0.95911 1.23119 0.93557 0.93655 0.89120 1.67700 1.07853 1.04370 1.39822 1.19878 0.95825 0.95626 0.89762 1.19842 0.98712 0.95429 1.03003 1.25899 1.02847 1.03826 0.95100 1.84179 1.41704 1.27113 1.06922 1.23730 1.07523 1.05465 0.98268 1.21053 0.90608 0.89928 1.00418 1.44596 1.41033 1.28374 1.04025 0.69651 0.91692 0.90771 0.93629 0.75678 0.80628 0.80178 0.81181 0.76381 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.78 13.29 21.45 0.28 -44.49 16 2 C 0.03 1.44 5.46 84.66 0.46 1.90 16 3 Si 0.96 38.09 29.54 68.60 2.03 40.12 16 4 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.57 -25.60 9.39 25.60 0.24 -25.36 16 8 H 0.06 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.27 10.36 6.19 85.63 0.53 10.89 16 10 N -0.34 -11.64 3.63 -350.82 -1.27 -12.91 16 11 C 0.18 5.48 11.45 83.25 0.95 6.43 16 12 C -0.34 -11.95 9.52 22.24 0.21 -11.74 16 13 C 0.46 16.73 8.07 133.91 1.08 17.81 16 14 N -0.70 -26.49 9.69 -311.27 -3.02 -29.51 16 15 C 0.53 20.64 7.69 86.95 0.67 21.31 16 16 O -0.60 -25.31 13.34 -4.96 -0.07 -25.38 16 17 C -0.16 -5.39 5.89 -19.99 -0.12 -5.51 16 18 C 0.18 5.56 10.74 85.31 0.92 6.48 16 19 N -0.49 -14.83 10.39 -188.80 -1.96 -16.79 16 20 C 0.12 3.28 6.97 39.71 0.28 3.55 16 21 C -0.14 -2.54 10.16 21.82 0.22 -2.32 16 22 C -0.14 -1.77 11.08 66.77 0.74 -1.03 16 23 S 0.14 2.37 23.29 -56.49 -1.32 1.06 16 24 C -0.23 -6.06 6.49 23.00 0.15 -5.91 16 25 C 0.01 0.31 9.73 22.86 0.22 0.53 16 26 N -0.46 -15.24 7.38 -54.79 -0.40 -15.65 16 27 H 0.45 13.26 8.96 -213.28 -1.91 11.35 16 28 H 0.27 12.89 8.31 -92.71 -0.77 12.12 16 29 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.23 4.95 8.06 -2.91 -0.02 4.93 16 32 H 0.18 6.50 5.77 -2.91 -0.02 6.49 16 33 H 0.18 5.40 7.55 -2.91 -0.02 5.38 16 34 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.22 0.80 8.06 -2.91 -0.02 0.78 16 36 H 0.15 4.27 7.72 -2.91 -0.02 4.25 16 Total: -1.00 -61.66 337.27 0.07 -61.58 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -0.75 Total: 24.94 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 6.56 Total: 17.04 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -6.37 Total: -119.36 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.07 Total: -25.38 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.32 Total: 1.06 kcal Total: -61.66 0.07 -61.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610230815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.339 kcal (2) G-P(sol) polarization free energy of solvation -61.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds