Wall clock time and date at job start Tue Mar 31 2020 15:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86800 * 119.99854 * 2 1 4 4 H 1.48496 * 109.47179 * 275.41659 * 3 2 1 5 5 H 1.48501 * 109.47009 * 35.41462 * 3 2 1 6 6 H 1.48503 * 109.47020 * 155.41730 * 3 2 1 7 7 C 1.39925 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00600 * 341.72757 * 7 2 1 9 9 C 1.41438 * 120.00278 * 161.73194 * 7 2 1 10 10 C 1.40805 * 120.17062 * 330.17691 * 9 7 2 11 11 C 1.37711 * 120.03485 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.41312 * 359.97438 * 11 10 9 13 13 C 1.39889 * 120.35321 * 359.77371 * 12 11 10 14 14 C 1.47857 * 120.02243 * 180.25242 * 13 12 11 15 15 N 1.32108 * 126.67439 * 359.94784 * 14 13 12 16 16 C 1.34204 * 105.54526 * 179.85660 * 15 14 13 17 17 C 1.50703 * 126.18778 * 180.14962 * 16 15 14 18 18 O 1.42900 * 109.47109 * 270.28273 * 17 16 15 19 19 C 1.42903 * 113.99901 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.46696 * 180.02562 * 19 18 17 21 21 F 1.39896 * 109.47377 * 60.00078 * 20 19 18 22 22 F 1.39905 * 109.46783 * 179.97438 * 20 19 18 23 23 F 1.39896 * 109.47361 * 299.99486 * 20 19 18 24 24 N 1.30035 * 107.62650 * 0.41047 * 16 15 14 25 25 O 1.21291 * 110.48039 * 359.73869 * 24 16 15 26 26 C 1.39023 * 119.95494 * 0.48764 * 13 12 11 27 27 H 0.97006 * 120.00334 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.97827 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.78917 * 180.02562 * 11 10 9 30 30 H 1.07997 * 119.81670 * 180.02562 * 12 11 10 31 31 H 1.08998 * 109.47161 * 30.28280 * 17 16 15 32 32 H 1.09000 * 109.47309 * 150.28137 * 17 16 15 33 33 H 1.08998 * 109.46906 * 299.99424 * 19 18 17 34 34 H 1.08991 * 109.47334 * 60.00040 * 19 18 17 35 35 H 1.07999 * 120.20663 * 179.76437 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5015 2.6169 0.8113 6 1 3.5924 1.4099 0.5825 7 6 2.0079 -1.2118 -0.0005 8 1 1.5088 -2.1237 0.2923 9 6 3.3688 -1.2426 -0.3845 10 6 3.8624 -0.3097 -1.3166 11 6 5.1878 -0.3426 -1.6889 12 6 6.0430 -1.2886 -1.1518 13 6 5.5716 -2.2200 -0.2205 14 6 6.4931 -3.2241 0.3528 15 7 7.7786 -3.3616 0.0808 16 6 8.1971 -4.3916 0.8326 17 6 9.5982 -4.9442 0.8839 18 8 9.7437 -5.9660 -0.1045 19 6 11.0431 -6.5597 -0.1397 20 6 11.0838 -7.6333 -1.2291 21 9 10.8038 -7.0499 -2.4694 22 9 12.3561 -8.2141 -1.2640 23 9 10.1291 -8.6170 -0.9502 24 7 7.1737 -4.8301 1.5045 25 8 6.1850 -4.1767 1.2464 26 6 4.2351 -2.2039 0.1618 27 1 -0.4851 0.8401 0.0004 28 1 3.2011 0.4318 -1.7398 29 1 5.5623 0.3751 -2.4038 30 1 7.0807 -1.3054 -1.4503 31 1 10.3118 -4.1441 0.6872 32 1 9.7870 -5.3647 1.8717 33 1 11.7869 -5.7933 -0.3575 34 1 11.2614 -7.0138 0.8267 35 1 3.8660 -2.9235 0.8776 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612873973.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:03 Heat of formation + Delta-G solvation = -108.613517 kcal Electronic energy + Delta-G solvation = -26189.524753 eV Core-core repulsion = 21548.031695 eV Total energy + Delta-G solvation = -4641.493058 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.43494 -48.00343 -47.87096 -45.28806 -38.77991 -38.07972 -35.64331 -34.02171 -32.85184 -30.72324 -30.59446 -29.65845 -27.61741 -25.40698 -24.17152 -23.70312 -22.80628 -20.85308 -20.62185 -19.04730 -18.96654 -18.41891 -17.99207 -17.81210 -16.99958 -16.70349 -16.31146 -15.97105 -15.17655 -14.86566 -14.81344 -14.75193 -14.53733 -14.34320 -14.05346 -14.04786 -13.91998 -13.26644 -12.94417 -12.91866 -12.76739 -12.34794 -12.22662 -12.13696 -11.89763 -11.49684 -11.13944 -11.03209 -10.88610 -10.65962 -10.49191 -10.11168 -9.95220 -9.83059 -9.32461 -7.97776 -7.80882 -7.09571 -4.66501 0.95912 1.66109 2.23847 2.39734 2.76688 2.98831 3.01715 3.09311 3.11822 3.21326 3.36495 3.58049 3.68612 3.84695 4.03630 4.20774 4.31281 4.44234 4.53333 4.66718 4.90708 5.17000 5.31444 5.77618 5.83439 5.99171 6.11352 6.18513 6.26489 6.47554 6.60285 6.81337 7.08251 7.27209 7.39927 7.60220 7.75617 8.16798 8.31432 8.38932 8.60014 9.92207 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.029179 B = 0.002223 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.365176 B =12592.599476 C =12788.318510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.083 3.917 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.242 1.242 7 C -0.442 4.442 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.211 4.211 11 C -0.082 4.082 12 C -0.185 4.185 13 C -0.014 4.014 14 C 0.265 3.735 15 N -0.481 5.481 16 C 0.159 3.841 17 C 0.166 3.834 18 O -0.366 6.366 19 C 0.019 3.981 20 C 0.462 3.538 21 F -0.173 7.173 22 F -0.177 7.177 23 F -0.174 7.174 24 N -0.377 5.377 25 O 0.085 5.915 26 C -0.158 4.158 27 H 0.288 0.712 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.478 -7.645 1.113 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.165 1.165 7 C -0.470 4.470 8 H 0.113 0.887 9 C 0.081 3.919 10 C -0.231 4.231 11 C -0.100 4.100 12 C -0.206 4.206 13 C -0.017 4.017 14 C 0.050 3.950 15 N -0.215 5.215 16 C -0.114 4.114 17 C 0.089 3.911 18 O -0.284 6.284 19 C -0.059 4.059 20 C 0.408 3.592 21 F -0.154 7.154 22 F -0.158 7.158 23 F -0.156 7.156 24 N -0.086 5.086 25 O 0.024 5.976 26 C -0.180 4.180 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 19.543 -8.266 1.347 21.262 hybrid contribution 0.233 0.662 -0.091 0.708 sum 19.776 -7.603 1.257 21.224 Atomic orbital electron populations 1.69683 1.08121 1.30564 1.33908 1.26171 0.94772 1.01797 0.90918 0.86347 0.81434 0.79739 0.79057 1.19380 1.21511 1.16543 1.19496 0.92775 0.96400 1.38295 0.88669 1.17586 0.93130 0.90861 0.90280 1.21300 0.95708 1.03881 1.02202 1.20555 0.93503 0.97292 0.98670 1.20375 0.99331 0.98726 1.02193 1.17099 0.90751 0.93653 1.00172 1.26969 0.90260 0.90141 0.87607 1.72106 1.08154 1.17612 1.23586 1.24944 0.97409 0.93908 0.95168 1.20366 0.88515 0.90095 0.92104 1.87977 1.28799 1.53731 1.57886 1.23529 0.88660 0.95692 0.98042 1.20106 0.73636 0.82466 0.82998 1.93244 1.93335 1.83809 1.45046 1.93213 1.40324 1.85641 1.96658 1.93235 1.64432 1.64460 1.93449 1.74569 0.94665 1.16555 1.22788 1.85409 1.30702 1.34222 1.47260 1.21227 0.90649 1.03351 1.02731 0.90164 0.87508 0.87568 0.87024 0.89050 0.89619 0.88004 0.88143 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.07 13.93 55.55 0.77 -19.30 16 2 C 0.08 2.04 5.40 -17.35 -0.09 1.95 16 3 Si 0.91 19.17 24.52 -169.99 -4.17 15.00 16 4 H -0.27 -5.44 6.71 56.52 0.38 -5.06 16 5 H -0.29 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.24 -5.20 6.86 56.52 0.39 -4.81 16 7 C -0.44 -11.06 9.57 -37.73 -0.36 -11.42 16 8 H 0.10 2.50 8.06 -52.48 -0.42 2.07 16 9 C 0.08 1.97 5.10 -106.87 -0.55 1.42 16 10 C -0.21 -4.61 7.17 -38.80 -0.28 -4.89 16 11 C -0.08 -1.60 10.01 -39.72 -0.40 -2.00 16 12 C -0.19 -3.61 9.71 -38.91 -0.38 -3.99 16 13 C -0.01 -0.29 5.87 -105.05 -0.62 -0.90 16 14 C 0.27 5.02 8.01 -13.84 -0.11 4.91 16 15 N -0.48 -8.62 11.25 -10.16 -0.11 -8.74 16 16 C 0.16 2.52 7.83 -156.56 -1.23 1.29 16 17 C 0.17 1.76 6.56 36.01 0.24 2.00 16 18 O -0.37 -4.22 10.21 -35.23 -0.36 -4.58 16 19 C 0.02 0.14 5.90 37.16 0.22 0.36 16 20 C 0.46 4.24 3.32 37.16 0.12 4.36 16 21 F -0.17 -1.96 17.26 2.25 0.04 -1.92 16 22 F -0.18 -1.46 17.32 2.25 0.04 -1.42 16 23 F -0.17 -1.94 17.26 2.25 0.04 -1.90 16 24 N -0.38 -6.52 12.15 31.18 0.38 -6.14 16 25 O 0.09 1.57 11.12 16.68 0.19 1.76 16 26 C -0.16 -3.40 9.47 -38.45 -0.36 -3.76 16 27 H 0.29 6.52 8.30 -40.82 -0.34 6.18 16 28 H 0.11 2.31 4.72 -52.49 -0.25 2.06 16 29 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.11 2.02 7.86 -52.49 -0.41 1.61 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.12 2.35 7.94 -52.49 -0.42 1.93 16 LS Contribution 327.08 15.07 4.93 4.93 Total: -1.00 -27.77 327.08 -4.83 -32.61 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -2.78 Total: 0.40 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -3.79 Total: -10.69 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 1.04 Total: -34.17 kcal Atomic # 8 Polarization: -2.65 SS G_CDS: -0.17 Total: -2.83 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.12 Total: -5.24 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.17 Total: 15.00 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.77 -4.83 -32.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612873973.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.006 kcal (2) G-P(sol) polarization free energy of solvation -27.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds