Wall clock time and date at job start Tue Mar 31 2020 15:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86800 * 119.99854 * 2 1 4 4 H 1.48496 * 109.47179 * 275.41659 * 3 2 1 5 5 H 1.48501 * 109.47009 * 35.41462 * 3 2 1 6 6 H 1.48503 * 109.47020 * 155.41730 * 3 2 1 7 7 C 1.39925 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00600 * 341.72757 * 7 2 1 9 9 C 1.41438 * 120.00278 * 161.73194 * 7 2 1 10 10 C 1.40805 * 120.17062 * 330.17691 * 9 7 2 11 11 C 1.37711 * 120.03485 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.41312 * 359.97438 * 11 10 9 13 13 C 1.39889 * 120.35321 * 359.77371 * 12 11 10 14 14 C 1.47857 * 120.02243 * 180.25242 * 13 12 11 15 15 N 1.32108 * 126.67439 * 359.94784 * 14 13 12 16 16 C 1.34204 * 105.54526 * 179.85660 * 15 14 13 17 17 C 1.50703 * 126.18778 * 180.14962 * 16 15 14 18 18 O 1.42900 * 109.47109 * 270.28273 * 17 16 15 19 19 C 1.42903 * 113.99901 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.46696 * 180.02562 * 19 18 17 21 21 F 1.39896 * 109.47377 * 60.00078 * 20 19 18 22 22 F 1.39905 * 109.46783 * 179.97438 * 20 19 18 23 23 F 1.39896 * 109.47361 * 299.99486 * 20 19 18 24 24 N 1.30035 * 107.62650 * 0.41047 * 16 15 14 25 25 O 1.21291 * 110.48039 * 359.73869 * 24 16 15 26 26 C 1.39023 * 119.95494 * 0.48764 * 13 12 11 27 27 H 0.97006 * 120.00334 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.97827 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.78917 * 180.02562 * 11 10 9 30 30 H 1.07997 * 119.81670 * 180.02562 * 12 11 10 31 31 H 1.08998 * 109.47161 * 30.28280 * 17 16 15 32 32 H 1.09000 * 109.47309 * 150.28137 * 17 16 15 33 33 H 1.08998 * 109.46906 * 299.99424 * 19 18 17 34 34 H 1.08991 * 109.47334 * 60.00040 * 19 18 17 35 35 H 1.07999 * 120.20663 * 179.76437 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5015 2.6169 0.8113 6 1 3.5924 1.4099 0.5825 7 6 2.0079 -1.2118 -0.0005 8 1 1.5088 -2.1237 0.2923 9 6 3.3688 -1.2426 -0.3845 10 6 3.8624 -0.3097 -1.3166 11 6 5.1878 -0.3426 -1.6889 12 6 6.0430 -1.2886 -1.1518 13 6 5.5716 -2.2200 -0.2205 14 6 6.4931 -3.2241 0.3528 15 7 7.7786 -3.3616 0.0808 16 6 8.1971 -4.3916 0.8326 17 6 9.5982 -4.9442 0.8839 18 8 9.7437 -5.9660 -0.1045 19 6 11.0431 -6.5597 -0.1397 20 6 11.0838 -7.6333 -1.2291 21 9 10.8038 -7.0499 -2.4694 22 9 12.3561 -8.2141 -1.2640 23 9 10.1291 -8.6170 -0.9502 24 7 7.1737 -4.8301 1.5045 25 8 6.1850 -4.1767 1.2464 26 6 4.2351 -2.2039 0.1618 27 1 -0.4851 0.8401 0.0004 28 1 3.2011 0.4318 -1.7398 29 1 5.5623 0.3751 -2.4038 30 1 7.0807 -1.3054 -1.4503 31 1 10.3118 -4.1441 0.6872 32 1 9.7870 -5.3647 1.8717 33 1 11.7869 -5.7933 -0.3575 34 1 11.2614 -7.0138 0.8267 35 1 3.8660 -2.9235 0.8776 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612873973.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:02 Heat of formation + Delta-G solvation = -126.512495 kcal Electronic energy + Delta-G solvation = -26190.300911 eV Core-core repulsion = 21548.031695 eV Total energy + Delta-G solvation = -4642.269216 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.15620 -48.70179 -48.65668 -46.63480 -39.75803 -39.51946 -36.95957 -35.72208 -34.31571 -32.30833 -31.64357 -30.98411 -28.53301 -27.16129 -25.63726 -24.34345 -24.17721 -22.44281 -22.13766 -19.85170 -19.70449 -19.68422 -19.23088 -18.88368 -18.34496 -17.73490 -17.47365 -17.01085 -16.56532 -16.32527 -15.96042 -15.55700 -15.51015 -15.45398 -15.08921 -14.82646 -14.80352 -14.68444 -14.50324 -14.02244 -13.92042 -13.66067 -13.55552 -13.43812 -13.08521 -12.84050 -12.75706 -12.54476 -12.37582 -12.18322 -11.74001 -11.56402 -11.46346 -11.13836 -11.03033 -9.65620 -9.46240 -8.89647 -6.53790 -0.52781 0.49233 0.72178 1.20062 1.31454 1.44935 1.51974 1.56560 1.61942 2.13410 2.14522 2.57648 2.58452 2.78372 2.92084 2.95932 3.40078 3.48909 3.74884 3.98487 4.08055 4.09757 4.22702 4.30080 4.41906 4.48561 4.64120 4.71241 4.86873 4.92416 5.12420 5.39852 5.53537 5.62175 5.72894 5.83918 6.07119 6.30328 6.61448 6.75803 6.94306 8.18336 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.029179 B = 0.002223 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.365176 B =12592.599476 C =12788.318510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.047 3.953 3 Si 0.960 3.040 4 H -0.249 1.249 5 H -0.280 1.280 6 H -0.247 1.247 7 C -0.480 4.480 8 H 0.060 0.940 9 C 0.070 3.930 10 C -0.217 4.217 11 C -0.078 4.078 12 C -0.167 4.167 13 C -0.016 4.016 14 C 0.252 3.748 15 N -0.482 5.482 16 C 0.166 3.834 17 C 0.165 3.835 18 O -0.400 6.400 19 C 0.021 3.979 20 C 0.456 3.544 21 F -0.190 7.190 22 F -0.172 7.172 23 F -0.191 7.191 24 N -0.389 5.389 25 O 0.069 5.931 26 C -0.171 4.171 27 H 0.295 0.705 28 H 0.110 0.890 29 H 0.147 0.853 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.421 -6.749 0.770 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.168 4.168 3 Si 0.783 3.217 4 H -0.174 1.174 5 H -0.206 1.206 6 H -0.170 1.170 7 C -0.509 4.509 8 H 0.078 0.922 9 C 0.068 3.932 10 C -0.237 4.237 11 C -0.096 4.096 12 C -0.187 4.187 13 C -0.018 4.018 14 C 0.037 3.963 15 N -0.217 5.217 16 C -0.108 4.108 17 C 0.088 3.912 18 O -0.319 6.319 19 C -0.057 4.057 20 C 0.402 3.598 21 F -0.172 7.172 22 F -0.153 7.153 23 F -0.172 7.172 24 N -0.101 5.101 25 O 0.012 5.988 26 C -0.192 4.192 27 H 0.106 0.894 28 H 0.128 0.872 29 H 0.165 0.835 30 H 0.153 0.847 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 23.474 -7.380 1.002 24.628 hybrid contribution -0.701 0.176 -0.028 0.723 sum 22.773 -7.204 0.974 23.905 Atomic orbital electron populations 1.69719 1.09312 1.31686 1.36318 1.26855 0.95344 1.04305 0.90284 0.85562 0.79869 0.76306 0.79995 1.17423 1.20640 1.17046 1.19448 0.94156 0.95885 1.41447 0.92209 1.17693 0.92592 0.92034 0.90898 1.21471 0.97017 1.03438 1.01773 1.20970 0.92291 0.97680 0.98666 1.20775 1.00376 0.97273 1.00324 1.17205 0.90341 0.94109 1.00153 1.26777 0.90712 0.90460 0.88366 1.72111 1.07423 1.18362 1.23766 1.25943 0.99098 0.92606 0.93137 1.20737 0.85653 0.91170 0.93625 1.87889 1.31439 1.54211 1.58382 1.23820 0.87441 0.95801 0.98591 1.20554 0.73368 0.82768 0.83084 1.93207 1.93493 1.84021 1.46436 1.93221 1.39796 1.85662 1.96633 1.93202 1.65217 1.65335 1.93496 1.74580 0.94951 1.16832 1.23708 1.85406 1.31566 1.34396 1.47442 1.21259 0.91458 1.03347 1.03184 0.89426 0.87223 0.83491 0.84697 0.86081 0.86517 0.84752 0.84852 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.35 13.93 21.82 0.30 -44.04 16 2 C 0.05 2.40 5.40 85.25 0.46 2.86 16 3 Si 0.96 39.26 24.52 68.60 1.68 40.95 16 4 H -0.25 -9.38 6.71 99.48 0.67 -8.71 16 5 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.25 -10.16 6.86 99.48 0.68 -9.48 16 7 C -0.48 -25.45 9.57 23.47 0.22 -25.23 16 8 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 9 C 0.07 3.34 5.10 -21.32 -0.11 3.23 16 10 C -0.22 -9.19 7.17 22.77 0.16 -9.03 16 11 C -0.08 -2.79 10.01 22.18 0.22 -2.57 16 12 C -0.17 -5.99 9.71 22.70 0.22 -5.77 16 13 C -0.02 -0.61 5.87 -20.14 -0.12 -0.73 16 14 C 0.25 9.26 8.01 87.32 0.70 9.96 16 15 N -0.48 -16.09 11.25 -302.76 -3.40 -19.50 16 16 C 0.17 4.82 7.83 138.53 1.08 5.91 16 17 C 0.16 2.82 6.56 71.24 0.47 3.28 16 18 O -0.40 -7.91 10.21 -148.98 -1.52 -9.43 16 19 C 0.02 0.21 5.90 71.98 0.42 0.64 16 20 C 0.46 7.41 3.32 71.98 0.24 7.65 16 21 F -0.19 -4.04 17.26 44.97 0.78 -3.27 16 22 F -0.17 -2.45 17.32 44.97 0.78 -1.67 16 23 F -0.19 -4.04 17.26 44.97 0.78 -3.26 16 24 N -0.39 -12.95 12.15 -58.66 -0.71 -13.66 16 25 O 0.07 2.52 11.12 69.75 0.78 3.29 16 26 C -0.17 -7.50 9.47 23.00 0.22 -7.28 16 27 H 0.30 13.87 8.30 -92.70 -0.77 13.10 16 28 H 0.11 4.56 4.72 -2.91 -0.01 4.55 16 29 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 30 H 0.14 4.27 7.86 -2.91 -0.02 4.25 16 31 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.11 4.85 7.94 -2.91 -0.02 4.83 16 Total: -1.00 -63.11 327.08 4.75 -58.36 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.10 Total: 9.32 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.20 Total: -17.08 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -3.81 Total: -77.21 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.75 Total: -6.14 kcal Atomic # 9 Polarization: -10.53 SS G_CDS: 2.33 Total: -8.20 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 1.68 Total: 40.95 kcal Total: -63.11 4.75 -58.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612873973.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.156 kcal (2) G-P(sol) polarization free energy of solvation -63.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds