Wall clock time and date at job start Tue Mar 31 2020 15:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86799 * 120.00011 * 2 1 4 4 H 1.48507 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47284 * 299.99780 * 3 2 1 6 6 H 1.48497 * 109.47161 * 59.99792 * 3 2 1 7 7 C 1.40159 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99853 * 197.93653 * 7 2 1 9 9 C 1.40964 * 119.99823 * 17.93443 * 7 2 1 10 10 C 1.40970 * 120.09767 * 24.70070 * 9 7 2 11 11 C 1.36197 * 119.89593 * 180.02562 * 10 9 7 12 12 C 1.40141 * 120.10061 * 359.97438 * 11 10 9 13 13 C 1.47427 * 119.89740 * 180.02562 * 12 11 10 14 14 N 1.32315 * 126.69092 * 180.02562 * 13 12 11 15 15 C 1.34091 * 105.54157 * 179.97438 * 14 13 12 16 16 C 1.50702 * 126.16200 * 180.26599 * 15 14 13 17 17 O 1.42903 * 109.46724 * 269.70751 * 16 15 14 18 18 C 1.42901 * 114.00004 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.47340 * 179.97438 * 18 17 16 20 20 F 1.39897 * 109.46893 * 59.99890 * 19 18 17 21 21 F 1.39903 * 109.47188 * 179.97438 * 19 18 17 22 22 F 1.39895 * 109.46855 * 300.00229 * 19 18 17 23 23 N 1.30106 * 107.66867 * 359.97438 * 15 14 13 24 24 O 1.21292 * 110.51501 * 359.97438 * 23 15 14 25 25 C 1.40131 * 120.19972 * 0.27602 * 12 11 10 26 26 C 1.36210 * 120.09984 * 359.48343 * 25 12 11 27 27 H 0.97003 * 120.00135 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.04880 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.95079 * 180.02562 * 11 10 9 30 30 H 1.09002 * 109.47324 * 29.70333 * 16 15 14 31 31 H 1.08999 * 109.47193 * 149.70945 * 16 15 14 32 32 H 1.09004 * 109.46978 * 300.00135 * 18 17 16 33 33 H 1.09005 * 109.47027 * 59.99601 * 18 17 16 34 34 H 1.08005 * 119.94903 * 179.74684 * 25 12 11 35 35 H 1.07999 * 120.04872 * 180.25372 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7010 1.3464 0.0006 5 1 1.8822 2.3964 -1.2125 6 1 1.8821 2.3964 1.2124 7 6 2.0077 -1.2138 0.0005 8 1 3.0483 -1.2364 0.2886 9 6 1.3542 -2.4051 -0.3748 10 6 0.2262 -2.3568 -1.2189 11 6 -0.4024 -3.5103 -1.5786 12 6 0.0710 -4.7438 -1.1114 13 6 -0.6124 -5.9897 -1.5040 14 7 -0.2830 -7.2195 -1.1437 15 6 -1.1804 -8.0202 -1.7366 16 6 -1.2381 -9.5224 -1.6317 17 8 -0.4569 -10.1032 -2.6780 18 6 -0.4449 -11.5321 -2.6697 19 6 0.4166 -12.0416 -3.8270 20 9 1.7232 -11.5634 -3.6813 21 9 0.4289 -13.4406 -3.8185 22 9 -0.1141 -11.5867 -5.0388 23 7 -1.9962 -7.2659 -2.4136 24 8 -1.6919 -6.0977 -2.2955 25 6 1.1889 -4.7962 -0.2680 26 6 1.8267 -3.6480 0.0930 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1390 -1.4066 -1.5797 29 1 -1.2664 -3.4744 -2.2255 30 1 -0.8411 -9.8348 -0.6658 31 1 -2.2724 -9.8537 -1.7239 32 1 -0.0318 -11.8865 -1.7253 33 1 -1.4629 -11.9047 -2.7836 34 1 1.5478 -5.7487 0.0930 35 1 2.6906 -3.6897 0.7397 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612874377.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:45 Heat of formation + Delta-G solvation = -115.882491 kcal Electronic energy + Delta-G solvation = -26034.225543 eV Core-core repulsion = 21392.417278 eV Total energy + Delta-G solvation = -4641.808264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.35568 -47.92598 -47.78931 -44.78078 -38.60896 -37.85713 -35.22016 -34.31110 -32.38985 -30.57663 -29.86389 -29.55948 -27.37777 -26.07605 -23.60561 -23.34146 -22.19498 -20.98121 -20.26672 -18.94001 -18.88124 -18.15901 -17.69453 -17.53892 -17.06808 -16.50111 -16.32389 -15.69148 -15.18771 -14.75285 -14.69315 -14.62148 -14.26631 -14.16964 -13.97451 -13.96930 -13.61439 -13.11270 -12.89358 -12.66226 -12.32154 -12.13566 -11.99908 -11.97714 -11.65763 -11.36005 -11.25734 -11.00769 -10.85320 -10.47516 -10.30292 -10.06846 -9.85688 -9.70076 -9.34183 -7.88623 -7.59477 -7.21709 -4.75515 1.35935 1.90782 2.41291 2.72871 2.86724 2.91170 2.92501 3.07369 3.32935 3.47655 3.57656 3.62107 3.67080 3.93508 4.29068 4.36756 4.41480 4.55397 4.64107 4.85137 5.22819 5.37220 5.74869 6.06377 6.11048 6.31243 6.38317 6.55061 6.62810 6.69059 6.86556 6.98417 7.27837 7.51136 7.68090 7.72464 7.87336 8.21704 8.43275 8.55320 8.77701 9.68396 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.029120 B = 0.002067 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.305744 B =13542.663151 C =13975.084901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.423 4.423 8 H 0.090 0.910 9 C 0.128 3.872 10 C -0.175 4.175 11 C -0.051 4.051 12 C -0.201 4.201 13 C 0.284 3.716 14 N -0.518 5.518 15 C 0.162 3.838 16 C 0.168 3.832 17 O -0.366 6.366 18 C 0.019 3.981 19 C 0.462 3.538 20 F -0.173 7.173 21 F -0.178 7.178 22 F -0.175 7.175 23 N -0.397 5.397 24 O 0.058 5.942 25 C -0.016 4.016 26 C -0.233 4.233 27 H 0.291 0.709 28 H 0.125 0.875 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.814 -14.500 -2.165 14.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.153 4.153 3 Si 0.740 3.260 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.450 4.450 8 H 0.108 0.892 9 C 0.124 3.876 10 C -0.194 4.194 11 C -0.071 4.071 12 C -0.207 4.207 13 C 0.077 3.923 14 N -0.254 5.254 15 C -0.111 4.111 16 C 0.091 3.909 17 O -0.284 6.284 18 C -0.060 4.060 19 C 0.408 3.592 20 F -0.154 7.154 21 F -0.159 7.159 22 F -0.156 7.156 23 N -0.113 5.113 24 O 0.002 5.998 25 C -0.036 4.036 26 C -0.253 4.253 27 H 0.102 0.898 28 H 0.142 0.858 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.345 -14.936 -2.570 15.336 hybrid contribution 0.256 0.613 0.017 0.664 sum -2.089 -14.323 -2.553 14.698 Atomic orbital electron populations 1.69759 1.08032 1.30564 1.29664 1.26200 0.94905 1.02295 0.91872 0.86097 0.81107 0.79739 0.79087 1.17860 1.19153 1.19480 1.19991 0.98587 0.91131 1.35249 0.89171 1.17868 0.90362 0.92294 0.87087 1.20962 0.99692 0.96938 1.01836 1.20480 0.97652 0.91612 0.97358 1.16637 1.03541 0.85360 1.15142 1.26710 0.84418 0.94701 0.86515 1.72105 1.26223 0.99232 1.27795 1.24771 0.91753 0.97874 0.96712 1.20332 0.95777 0.83925 0.90872 1.87986 1.71960 1.16087 1.52322 1.23513 1.00869 0.84652 0.96918 1.20127 0.79792 0.75245 0.84051 1.93242 1.38662 1.87876 1.95664 1.93207 1.96551 1.29475 1.96690 1.93230 1.85963 1.88671 1.47761 1.74481 1.24334 0.89919 1.22572 1.85335 1.39695 1.21258 1.53522 1.20309 0.92333 0.97612 0.93372 1.20683 1.04538 0.92328 1.07764 0.89806 0.85767 0.88126 0.89391 0.90029 0.88111 0.88297 0.87634 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.03 10.96 55.56 0.61 -16.43 16 2 C 0.07 1.53 5.13 -17.32 -0.09 1.44 16 3 Si 0.92 16.09 29.60 -169.99 -5.03 11.06 16 4 H -0.26 -4.46 7.11 56.52 0.40 -4.05 16 5 H -0.27 -4.64 7.11 56.52 0.40 -4.24 16 6 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 7 C -0.42 -9.73 9.03 -37.83 -0.34 -10.07 16 8 H 0.09 1.96 7.91 -52.49 -0.42 1.55 16 9 C 0.13 3.03 5.57 -106.80 -0.60 2.44 16 10 C -0.17 -4.08 8.63 -39.28 -0.34 -4.42 16 11 C -0.05 -1.11 9.66 -39.60 -0.38 -1.50 16 12 C -0.20 -4.42 5.89 -104.73 -0.62 -5.04 16 13 C 0.28 6.01 7.99 -13.92 -0.11 5.90 16 14 N -0.52 -10.52 11.24 -10.16 -0.11 -10.63 16 15 C 0.16 2.93 7.82 -156.60 -1.23 1.70 16 16 C 0.17 2.10 6.56 36.01 0.24 2.34 16 17 O -0.37 -4.80 10.21 -35.23 -0.36 -5.16 16 18 C 0.02 0.16 5.90 37.16 0.22 0.38 16 19 C 0.46 4.68 3.32 37.16 0.12 4.81 16 20 F -0.17 -2.13 17.26 2.25 0.04 -2.09 16 21 F -0.18 -1.61 17.32 2.25 0.04 -1.57 16 22 F -0.17 -2.10 17.26 2.25 0.04 -2.06 16 23 N -0.40 -7.70 12.15 31.24 0.38 -7.32 16 24 O 0.06 1.19 11.12 16.41 0.18 1.37 16 25 C -0.02 -0.35 9.63 -39.60 -0.38 -0.73 16 26 C -0.23 -5.18 9.73 -39.28 -0.38 -5.56 16 27 H 0.29 5.82 8.29 -40.82 -0.34 5.48 16 28 H 0.12 2.93 6.16 -52.49 -0.32 2.61 16 29 H 0.10 2.01 7.93 -52.49 -0.42 1.59 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.11 2.14 7.86 -52.48 -0.41 1.73 16 35 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 332.07 15.07 5.00 5.00 Total: -1.00 -27.05 332.07 -5.91 -32.96 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -2.81 Total: 3.17 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -3.89 Total: -8.31 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.87 Total: -34.38 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.18 Total: -3.78 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.12 Total: -5.72 kcal Atomic # 14 Polarization: 16.09 SS G_CDS: -5.03 Total: 11.06 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.05 -5.91 -32.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612874377.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.921 kcal (2) G-P(sol) polarization free energy of solvation -27.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds