Wall clock time and date at job start Tue Mar 31 2020 15:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86799 * 120.00011 * 2 1 4 4 H 1.48507 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47284 * 299.99780 * 3 2 1 6 6 H 1.48497 * 109.47161 * 59.99792 * 3 2 1 7 7 C 1.40159 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99853 * 197.93653 * 7 2 1 9 9 C 1.40964 * 119.99823 * 17.93443 * 7 2 1 10 10 C 1.40970 * 120.09767 * 24.70070 * 9 7 2 11 11 C 1.36197 * 119.89593 * 180.02562 * 10 9 7 12 12 C 1.40141 * 120.10061 * 359.97438 * 11 10 9 13 13 C 1.47427 * 119.89740 * 180.02562 * 12 11 10 14 14 N 1.32315 * 126.69092 * 180.02562 * 13 12 11 15 15 C 1.34091 * 105.54157 * 179.97438 * 14 13 12 16 16 C 1.50702 * 126.16200 * 180.26599 * 15 14 13 17 17 O 1.42903 * 109.46724 * 269.70751 * 16 15 14 18 18 C 1.42901 * 114.00004 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.47340 * 179.97438 * 18 17 16 20 20 F 1.39897 * 109.46893 * 59.99890 * 19 18 17 21 21 F 1.39903 * 109.47188 * 179.97438 * 19 18 17 22 22 F 1.39895 * 109.46855 * 300.00229 * 19 18 17 23 23 N 1.30106 * 107.66867 * 359.97438 * 15 14 13 24 24 O 1.21292 * 110.51501 * 359.97438 * 23 15 14 25 25 C 1.40131 * 120.19972 * 0.27602 * 12 11 10 26 26 C 1.36210 * 120.09984 * 359.48343 * 25 12 11 27 27 H 0.97003 * 120.00135 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.04880 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.95079 * 180.02562 * 11 10 9 30 30 H 1.09002 * 109.47324 * 29.70333 * 16 15 14 31 31 H 1.08999 * 109.47193 * 149.70945 * 16 15 14 32 32 H 1.09004 * 109.46978 * 300.00135 * 18 17 16 33 33 H 1.09005 * 109.47027 * 59.99601 * 18 17 16 34 34 H 1.08005 * 119.94903 * 179.74684 * 25 12 11 35 35 H 1.07999 * 120.04872 * 180.25372 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7010 1.3464 0.0006 5 1 1.8822 2.3964 -1.2125 6 1 1.8821 2.3964 1.2124 7 6 2.0077 -1.2138 0.0005 8 1 3.0483 -1.2364 0.2886 9 6 1.3542 -2.4051 -0.3748 10 6 0.2262 -2.3568 -1.2189 11 6 -0.4024 -3.5103 -1.5786 12 6 0.0710 -4.7438 -1.1114 13 6 -0.6124 -5.9897 -1.5040 14 7 -0.2830 -7.2195 -1.1437 15 6 -1.1804 -8.0202 -1.7366 16 6 -1.2381 -9.5224 -1.6317 17 8 -0.4569 -10.1032 -2.6780 18 6 -0.4449 -11.5321 -2.6697 19 6 0.4166 -12.0416 -3.8270 20 9 1.7232 -11.5634 -3.6813 21 9 0.4289 -13.4406 -3.8185 22 9 -0.1141 -11.5867 -5.0388 23 7 -1.9962 -7.2659 -2.4136 24 8 -1.6919 -6.0977 -2.2955 25 6 1.1889 -4.7962 -0.2680 26 6 1.8267 -3.6480 0.0930 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1390 -1.4066 -1.5797 29 1 -1.2664 -3.4744 -2.2255 30 1 -0.8411 -9.8348 -0.6658 31 1 -2.2724 -9.8537 -1.7239 32 1 -0.0318 -11.8865 -1.7253 33 1 -1.4629 -11.9047 -2.7836 34 1 1.5478 -5.7487 0.0930 35 1 2.6906 -3.6897 0.7397 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612874377.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:44 Heat of formation + Delta-G solvation = -131.353586 kcal Electronic energy + Delta-G solvation = -26034.896420 eV Core-core repulsion = 21392.417278 eV Total energy + Delta-G solvation = -4642.479141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.15936 -48.70373 -48.65830 -46.30383 -39.58338 -39.47704 -36.71262 -35.95242 -33.91645 -31.82067 -31.34338 -31.06268 -28.43194 -27.76211 -24.90968 -24.33991 -23.72851 -22.69795 -21.81053 -19.75898 -19.68803 -19.40610 -19.11867 -18.95356 -18.45571 -17.51232 -17.42554 -17.08461 -16.53193 -15.89025 -15.78266 -15.53437 -15.49517 -15.28427 -15.09174 -14.82885 -14.80560 -14.54812 -14.03098 -13.93833 -13.79406 -13.62804 -13.42760 -13.22698 -12.96017 -12.85496 -12.77458 -12.43061 -12.35928 -11.96782 -11.69092 -11.44938 -11.39494 -11.11886 -10.96737 -9.63156 -9.32234 -8.85192 -6.50058 -0.24599 0.65527 1.14567 1.23345 1.42571 1.51538 1.58270 1.70207 1.94674 2.15875 2.23381 2.62987 2.68746 2.90800 2.95696 3.09869 3.52191 3.61597 3.90947 4.05203 4.09213 4.15441 4.35971 4.37497 4.48127 4.79792 4.94699 4.98687 5.01776 5.14704 5.25363 5.55628 5.56554 5.78103 5.94878 5.97617 6.14594 6.48510 6.70213 6.81239 7.22128 8.08618 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.029120 B = 0.002067 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.305744 B =13542.663151 C =13975.084901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.035 3.965 3 Si 0.989 3.011 4 H -0.253 1.253 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.448 4.448 8 H 0.096 0.904 9 C 0.103 3.897 10 C -0.193 4.193 11 C -0.052 4.052 12 C -0.210 4.210 13 C 0.275 3.725 14 N -0.526 5.526 15 C 0.166 3.834 16 C 0.168 3.832 17 O -0.400 6.400 18 C 0.019 3.981 19 C 0.458 3.542 20 F -0.190 7.190 21 F -0.171 7.171 22 F -0.190 7.190 23 N -0.408 5.408 24 O 0.046 5.954 25 C -0.017 4.017 26 C -0.243 4.243 27 H 0.300 0.700 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.118 0.882 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.940 -15.615 -1.627 15.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.186 4.186 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.475 4.475 8 H 0.114 0.886 9 C 0.099 3.901 10 C -0.212 4.212 11 C -0.072 4.072 12 C -0.215 4.215 13 C 0.066 3.934 14 N -0.262 5.262 15 C -0.108 4.108 16 C 0.091 3.909 17 O -0.319 6.319 18 C -0.058 4.058 19 C 0.403 3.597 20 F -0.172 7.172 21 F -0.152 7.152 22 F -0.172 7.172 23 N -0.126 5.126 24 O -0.006 6.006 25 C -0.037 4.037 26 C -0.263 4.263 27 H 0.112 0.888 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.136 0.864 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.483 -16.059 -2.037 16.377 hybrid contribution 0.240 0.761 -0.188 0.820 sum -2.243 -15.298 -2.225 15.621 Atomic orbital electron populations 1.69782 1.09399 1.32039 1.29795 1.27021 0.95539 1.05169 0.90843 0.85028 0.79635 0.75263 0.79208 1.17605 1.18715 1.18802 1.20272 0.99052 0.91909 1.36266 0.88638 1.18196 0.90923 0.93328 0.87697 1.20952 1.00489 0.97002 1.02793 1.20628 0.97855 0.91426 0.97252 1.16771 1.03777 0.85795 1.15172 1.26630 0.84870 0.94861 0.87043 1.72118 1.26863 0.99199 1.28060 1.25799 0.89999 1.00298 0.94659 1.20655 0.97929 0.80308 0.92000 1.87895 1.72407 1.18878 1.52701 1.23819 1.02575 0.82206 0.97183 1.20515 0.79375 0.75522 0.84244 1.93207 1.40089 1.88163 1.95717 1.93218 1.96487 1.28877 1.96655 1.93199 1.86067 1.88918 1.48985 1.74475 1.25077 0.89660 1.23402 1.85325 1.39580 1.22123 1.53606 1.20447 0.92150 0.97960 0.93143 1.20869 1.05150 0.92137 1.08123 0.88842 0.86667 0.86779 0.86737 0.86808 0.84974 0.84888 0.86379 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.81 10.96 21.86 0.24 -35.57 16 2 C 0.04 1.52 5.13 85.33 0.44 1.96 16 3 Si 0.99 32.51 29.60 68.60 2.03 34.54 16 4 H -0.25 -8.13 7.11 99.48 0.71 -7.42 16 5 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 6 H -0.26 -8.34 7.11 99.48 0.71 -7.63 16 7 C -0.45 -20.93 9.03 23.40 0.21 -20.72 16 8 H 0.10 4.19 7.91 -2.91 -0.02 4.17 16 9 C 0.10 4.97 5.57 -21.28 -0.12 4.86 16 10 C -0.19 -9.26 8.63 22.46 0.19 -9.06 16 11 C -0.05 -2.31 9.66 22.26 0.21 -2.09 16 12 C -0.21 -9.29 5.89 -19.94 -0.12 -9.41 16 13 C 0.28 11.56 7.99 87.15 0.70 12.26 16 14 N -0.53 -20.78 11.24 -302.43 -3.40 -24.17 16 15 C 0.17 5.69 7.82 138.54 1.08 6.78 16 16 C 0.17 3.62 6.56 71.24 0.47 4.09 16 17 O -0.40 -9.38 10.21 -148.98 -1.52 -10.90 16 18 C 0.02 0.26 5.90 71.98 0.42 0.68 16 19 C 0.46 8.43 3.32 71.98 0.24 8.67 16 20 F -0.19 -4.49 17.26 44.97 0.78 -3.71 16 21 F -0.17 -2.74 17.32 44.97 0.78 -1.96 16 22 F -0.19 -4.37 17.26 44.97 0.78 -3.60 16 23 N -0.41 -15.38 12.15 -58.28 -0.71 -16.09 16 24 O 0.05 1.88 11.12 68.77 0.76 2.65 16 25 C -0.02 -0.74 9.63 22.26 0.21 -0.53 16 26 C -0.24 -10.93 9.73 22.46 0.22 -10.71 16 27 H 0.30 12.07 8.29 -92.71 -0.77 11.30 16 28 H 0.12 5.64 6.16 -2.91 -0.02 5.62 16 29 H 0.11 4.65 7.93 -2.91 -0.02 4.62 16 30 H 0.11 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.13 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.13 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.12 4.73 7.86 -2.91 -0.02 4.70 16 35 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -59.42 332.07 5.07 -54.35 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 1.16 Total: 17.70 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 4.17 Total: -13.23 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -3.87 Total: -75.83 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.76 Total: -8.26 kcal Atomic # 9 Polarization: -11.60 SS G_CDS: 2.33 Total: -9.27 kcal Atomic # 14 Polarization: 32.51 SS G_CDS: 2.03 Total: 34.54 kcal Total: -59.42 5.07 -54.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612874377.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.999 kcal (2) G-P(sol) polarization free energy of solvation -59.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds