Wall clock time and date at job start Tue Mar 31 2020 14:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86802 * 120.00145 * 2 1 4 4 H 1.48499 * 109.47399 * 239.99879 * 3 2 1 5 5 H 1.48504 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47113 * 120.00017 * 3 2 1 7 7 C 1.38656 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99923 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.35753 * 117.00190 * 185.07660 * 9 7 2 11 11 C 1.39062 * 119.98244 * 174.48341 * 10 9 7 12 12 C 1.38262 * 120.29069 * 180.02562 * 11 10 9 13 13 C 1.37948 * 120.25110 * 359.97438 * 12 11 10 14 14 C 1.39936 * 119.95887 * 0.02562 * 13 12 11 15 15 C 1.47113 * 120.14032 * 179.97438 * 14 13 12 16 16 C 1.35071 * 120.00347 * 359.97438 * 15 14 13 17 17 C 1.46213 * 120.00264 * 179.97438 * 16 15 14 18 18 O 1.21729 * 120.00037 * 0.02562 * 17 16 15 19 19 C 1.47918 * 120.00113 * 180.02562 * 17 16 15 20 20 C 1.39639 * 120.13712 * 180.02562 * 19 17 16 21 21 C 1.37926 * 119.87255 * 179.97438 * 20 19 17 22 22 C 1.38377 * 120.16291 * 359.97438 * 21 20 19 23 23 C 1.38469 * 120.28442 * 0.02562 * 22 21 20 24 24 Cl 1.73602 * 119.93903 * 180.02562 * 23 22 21 25 25 C 1.38080 * 120.11918 * 359.73638 * 23 22 21 26 26 C 1.38509 * 119.98543 * 354.74320 * 10 9 7 27 27 H 0.97004 * 119.99903 * 359.97438 * 1 2 3 28 28 H 1.08006 * 119.85507 * 359.97438 * 11 10 9 29 29 H 1.07995 * 119.87201 * 179.97438 * 12 11 10 30 30 H 1.08004 * 120.02376 * 180.02562 * 13 12 11 31 31 H 1.07998 * 119.99690 * 179.72128 * 15 14 13 32 32 H 1.07998 * 120.00011 * 0.02562 * 16 15 14 33 33 H 1.07994 * 120.06328 * 359.97438 * 20 19 17 34 34 H 1.08006 * 119.91431 * 180.02562 * 21 20 19 35 35 H 1.08001 * 119.85325 * 179.97438 * 22 21 20 36 36 H 1.07998 * 120.07918 * 180.25495 * 25 23 22 37 37 H 1.08001 * 120.12708 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3685 -0.0005 10 6 2.0701 -3.5046 0.1060 11 6 1.4340 -4.7352 0.2279 12 6 2.1766 -5.8963 0.3373 13 6 3.5550 -5.8433 0.3258 14 6 4.2060 -4.6106 0.2036 15 6 5.6758 -4.5494 0.1915 16 6 6.4000 -5.6845 0.2990 17 6 7.8608 -5.6237 0.2864 18 8 8.4244 -4.5501 0.1795 19 6 8.6538 -6.8669 0.4036 20 6 10.0491 -6.8120 0.3924 21 6 10.7831 -7.9745 0.5025 22 6 10.1403 -9.1938 0.6244 23 6 8.7571 -9.2559 0.6363 24 17 7.9599 -10.7903 0.7904 25 6 8.0107 -8.0989 0.5317 26 6 3.4535 -3.4371 0.0985 27 1 -0.4850 0.8401 0.0004 28 1 0.3551 -4.7841 0.2380 29 1 1.6756 -6.8483 0.4321 30 1 4.1315 -6.7527 0.4111 31 1 6.1757 -3.5973 0.0926 32 1 5.9000 -6.6371 0.3934 33 1 10.5524 -5.8613 0.2977 34 1 11.8624 -7.9329 0.4943 35 1 10.7200 -10.1011 0.7099 36 1 6.9319 -8.1477 0.5452 37 1 3.9491 -2.4818 0.0085 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727744403.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:51 Heat of formation + Delta-G solvation = -3.628422 kcal Electronic energy + Delta-G solvation = -22795.848973 eV Core-core repulsion = 19109.181564 eV Total energy + Delta-G solvation = -3686.667409 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.27995 -39.18471 -38.51595 -36.82368 -36.71892 -33.67949 -32.31734 -31.93714 -31.08751 -29.78089 -28.69090 -25.68013 -25.12979 -23.45618 -22.59488 -21.79298 -20.69394 -19.04079 -18.05891 -17.80863 -16.91238 -16.18619 -16.05589 -15.30437 -15.22928 -14.84101 -14.70665 -14.46965 -14.28779 -14.10450 -13.76813 -13.66943 -13.60048 -12.94177 -12.48908 -12.35506 -12.17766 -11.86100 -11.79345 -11.75601 -11.64427 -11.39339 -11.04069 -10.90682 -10.74711 -10.49774 -9.93413 -9.90281 -9.50736 -9.49096 -9.17715 -8.89660 -7.98241 -7.38231 -6.51980 -4.12177 0.11513 0.75922 0.93679 1.70599 2.14667 2.28341 2.94586 3.10737 3.12155 3.14173 3.51667 3.80304 3.91403 4.31256 4.47679 4.50151 4.73486 4.84504 4.97926 5.01250 5.04790 5.09945 5.15750 5.35436 5.41372 5.58407 5.67663 5.70428 5.80772 5.89807 5.95003 6.02954 6.24913 6.27813 6.37765 6.58563 6.66738 6.94231 7.06520 7.17260 7.27943 7.46227 7.60544 7.91003 8.93083 9.59691 10.65423 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.002323 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.721261 B =12052.299016 C =13557.490069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.042 3.958 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.396 4.396 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.145 3.855 11 C -0.171 4.171 12 C -0.083 4.083 13 C -0.183 4.183 14 C -0.054 4.054 15 C 0.025 3.975 16 C -0.270 4.270 17 C 0.427 3.573 18 O -0.462 6.462 19 C -0.139 4.139 20 C -0.062 4.062 21 C -0.119 4.119 22 C -0.086 4.086 23 C -0.048 4.048 24 Cl -0.065 7.065 25 C -0.064 4.064 26 C -0.199 4.199 27 H 0.272 0.728 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.779 -17.703 1.354 25.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.472 4.472 8 H 0.109 0.891 9 O -0.077 6.077 10 C 0.091 3.909 11 C -0.190 4.190 12 C -0.102 4.102 13 C -0.202 4.202 14 C -0.055 4.055 15 C 0.007 3.993 16 C -0.288 4.288 17 C 0.310 3.690 18 O -0.341 6.341 19 C -0.141 4.141 20 C -0.080 4.080 21 C -0.138 4.138 22 C -0.105 4.105 23 C -0.075 4.075 24 Cl -0.036 7.036 25 C -0.083 4.083 26 C -0.218 4.218 27 H 0.082 0.918 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.163 0.837 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 17.545 -17.057 1.289 24.504 hybrid contribution 0.361 0.491 0.032 0.610 sum 17.906 -16.566 1.321 24.429 Atomic orbital electron populations 1.70023 1.05985 1.27962 1.45469 1.25290 0.95853 0.98870 0.96302 0.85787 0.78754 0.79648 0.79338 1.19381 1.20192 1.19386 1.21273 0.91773 0.80758 1.53407 0.89073 1.84000 1.34113 1.11355 1.78264 1.19258 0.90018 0.88380 0.93205 1.20449 0.99936 0.90316 1.08325 1.20604 0.93502 0.96977 0.99080 1.20842 0.94371 0.96039 1.08924 1.18685 0.91147 0.93689 1.01943 1.22767 0.92841 0.98491 0.85230 1.23190 0.93456 1.00163 1.12009 1.20321 0.89294 0.87095 0.72320 1.90651 1.74349 1.31204 1.37872 1.20502 0.94512 0.94456 1.04585 1.21527 0.92870 0.99497 0.94155 1.21136 1.00610 0.91421 1.00591 1.21300 0.92375 0.99163 0.97683 1.20867 0.93028 0.87303 1.06293 1.98391 1.80122 1.28808 1.96289 1.21404 1.01034 0.89969 0.95912 1.21431 0.93814 0.98082 1.08492 0.91835 0.86153 0.86485 0.86932 0.85209 0.84843 0.84174 0.84405 0.84539 0.83706 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.72 13.67 55.48 0.76 -23.96 16 2 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 20.20 29.55 -169.99 -5.02 15.18 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.40 -10.78 9.48 30.89 0.29 -10.49 16 8 H 0.09 2.28 5.20 -52.48 -0.27 2.01 16 9 O -0.17 -4.80 9.76 0.04 0.00 -4.80 16 10 C 0.15 3.35 6.64 -39.18 -0.26 3.09 16 11 C -0.17 -3.39 9.99 -39.27 -0.39 -3.78 16 12 C -0.08 -1.37 10.02 -39.68 -0.40 -1.77 16 13 C -0.18 -2.91 9.41 -39.05 -0.37 -3.27 16 14 C -0.05 -0.95 5.87 -105.08 -0.62 -1.57 16 15 C 0.03 0.38 9.46 -37.11 -0.35 0.03 16 16 C -0.27 -3.49 8.90 -37.51 -0.33 -3.83 16 17 C 0.43 5.59 7.07 -32.42 -0.23 5.37 16 18 O -0.46 -7.26 16.24 5.16 0.08 -7.18 16 19 C -0.14 -1.49 5.88 -104.91 -0.62 -2.11 16 20 C -0.06 -0.58 9.60 -39.17 -0.38 -0.95 16 21 C -0.12 -0.85 10.03 -39.64 -0.40 -1.24 16 22 C -0.09 -0.62 9.82 -39.44 -0.39 -1.01 16 23 C -0.05 -0.42 6.31 -39.55 -0.25 -0.66 16 24 Cl -0.07 -0.54 28.95 -51.86 -1.50 -2.04 16 25 C -0.06 -0.61 9.23 -39.14 -0.36 -0.97 16 26 C -0.20 -4.14 8.91 -38.90 -0.35 -4.48 16 27 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 29 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.11 1.43 6.16 -52.48 -0.32 1.10 16 31 H 0.13 1.99 7.52 -52.49 -0.39 1.59 16 32 H 0.13 1.44 4.34 -52.49 -0.23 1.22 16 33 H 0.14 1.25 7.65 -52.49 -0.40 0.85 16 34 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 35 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.15 1.20 6.23 -52.49 -0.33 0.87 16 37 H 0.13 2.77 5.63 -52.49 -0.30 2.48 16 LS Contribution 344.87 15.07 5.20 5.20 Total: -1.00 -30.62 344.87 -9.04 -39.66 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -3.07 Total: 4.55 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -5.49 Total: -26.61 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.76 Total: -23.96 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.62 -9.04 -39.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727744403.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.036 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds