Wall clock time and date at job start Tue Mar 31 2020 14:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86796 * 120.00265 * 2 1 4 4 H 1.48505 * 109.46989 * 240.00028 * 3 2 1 5 5 H 1.48506 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47271 * 119.99759 * 3 2 1 7 7 C 1.38654 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00292 * 180.02562 * 7 2 1 9 9 O 1.34833 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.35770 * 116.99752 * 185.05360 * 9 7 2 11 11 C 1.39055 * 119.98097 * 354.39575 * 10 9 7 12 12 C 1.38254 * 120.28852 * 179.97438 * 11 10 9 13 13 C 1.37959 * 120.25323 * 0.02562 * 12 11 10 14 14 C 1.39935 * 119.95435 * 359.97438 * 13 12 11 15 15 C 1.47113 * 120.13785 * 179.97438 * 14 13 12 16 16 C 1.35076 * 119.99881 * 136.98407 * 15 14 13 17 17 C 1.46226 * 119.99656 * 348.73340 * 16 15 14 18 18 O 1.21719 * 120.00328 * 353.47853 * 17 16 15 19 19 C 1.47915 * 119.99581 * 173.47480 * 17 16 15 20 20 C 1.39633 * 120.13825 * 179.97438 * 19 17 16 21 21 C 1.37920 * 119.87838 * 180.02562 * 20 19 17 22 22 C 1.38380 * 120.16170 * 0.27937 * 21 20 19 23 23 C 1.38468 * 120.28206 * 359.44290 * 22 21 20 24 24 Cl 1.73600 * 119.94034 * 180.30487 * 23 22 21 25 25 C 1.38080 * 120.12086 * 0.55357 * 23 22 21 26 26 C 1.38514 * 119.98013 * 174.65445 * 10 9 7 27 27 H 0.97005 * 120.00092 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.85412 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.87900 * 179.97438 * 12 11 10 30 30 H 1.08001 * 120.02434 * 179.97438 * 13 12 11 31 31 H 1.08000 * 120.00529 * 316.98722 * 15 14 13 32 32 H 1.08002 * 120.00313 * 168.73008 * 16 15 14 33 33 H 1.08004 * 120.06388 * 0.02562 * 20 19 17 34 34 H 1.08004 * 119.91983 * 179.97438 * 21 20 19 35 35 H 1.08001 * 119.85889 * 179.72788 * 22 21 20 36 36 H 1.08003 * 120.08468 * 179.74233 * 25 23 22 37 37 H 1.07997 * 120.12437 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0887 -1.2009 0.0010 9 8 1.3345 -2.3684 0.0005 10 6 2.0698 -3.5047 0.1076 11 6 3.4587 -3.4376 0.0935 12 6 4.2137 -4.5906 0.2026 13 6 3.5950 -5.8175 0.3260 14 6 2.1980 -5.8971 0.3415 15 6 1.5340 -7.2033 0.4723 16 6 0.4703 -7.3410 1.2934 17 6 0.1289 -6.2736 2.2327 18 8 0.8682 -5.3151 2.3597 19 6 -1.1151 -6.3588 3.0285 20 6 -1.4437 -5.3415 3.9267 21 6 -2.6047 -5.4266 4.6664 22 6 -3.4409 -6.5200 4.5245 23 6 -3.1244 -7.5299 3.6315 24 17 -4.1838 -8.8937 3.4549 25 6 -1.9651 -7.4566 2.8851 26 6 1.4361 -4.7307 0.2256 27 1 -0.4850 0.8401 -0.0004 28 1 3.9497 -2.4805 -0.0032 29 1 5.2920 -4.5309 0.1905 30 1 4.1883 -6.7159 0.4106 31 1 1.8969 -8.0522 -0.0881 32 1 -0.1280 -8.2394 1.2561 33 1 -0.7900 -4.4895 4.0421 34 1 -2.8594 -4.6403 5.3616 35 1 -4.3466 -6.5838 5.1094 36 1 -1.7167 -8.2466 2.1918 37 1 0.3575 -4.7848 0.2329 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727744404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:54 Heat of formation + Delta-G solvation = 14.136348 kcal Electronic energy + Delta-G solvation = -23877.416742 eV Core-core repulsion = 20191.519671 eV Total energy + Delta-G solvation = -3685.897071 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.16737 -39.03729 -38.18811 -36.64535 -36.31804 -33.38052 -32.21184 -31.73583 -30.80854 -29.39868 -28.64170 -25.44392 -24.93517 -23.20398 -22.37650 -21.34719 -20.93300 -18.95625 -17.88887 -17.35790 -16.92235 -15.85564 -15.58818 -15.25111 -15.11232 -14.59315 -14.46325 -14.15632 -14.09220 -14.05101 -13.53795 -13.37856 -13.22034 -12.95649 -12.41184 -12.21227 -12.08381 -11.66587 -11.60838 -11.57526 -11.35897 -11.18288 -10.91626 -10.81483 -10.64580 -10.44318 -9.57114 -9.50454 -9.27992 -9.21373 -8.92296 -8.77737 -7.58988 -7.16642 -6.38568 -3.97054 0.40530 1.01747 1.21428 1.87960 2.42960 2.44591 3.05296 3.15814 3.17869 3.19787 3.77745 4.01219 4.09525 4.54837 4.63659 4.72499 4.96168 5.04963 5.11934 5.16620 5.23279 5.37876 5.40821 5.57055 5.64920 5.69605 5.86431 5.90464 6.07915 6.11236 6.16131 6.29707 6.36647 6.43999 6.54907 6.72657 6.93991 7.09516 7.23807 7.37887 7.46659 7.81585 7.85697 8.05726 9.06914 9.78669 10.79658 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.003278 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.974508 B = 8538.512179 C =10232.942567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.389 4.389 8 H 0.090 0.910 9 O -0.180 6.180 10 C 0.147 3.853 11 C -0.217 4.217 12 C -0.087 4.087 13 C -0.183 4.183 14 C -0.054 4.054 15 C 0.007 3.993 16 C -0.253 4.253 17 C 0.403 3.597 18 O -0.407 6.407 19 C -0.135 4.135 20 C -0.058 4.058 21 C -0.117 4.117 22 C -0.090 4.090 23 C -0.050 4.050 24 Cl -0.072 7.072 25 C -0.071 4.071 26 C -0.118 4.118 27 H 0.269 0.731 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 -15.957 6.687 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.107 0.893 9 O -0.084 6.084 10 C 0.094 3.906 11 C -0.236 4.236 12 C -0.105 4.105 13 C -0.202 4.202 14 C -0.054 4.054 15 C -0.012 4.012 16 C -0.271 4.271 17 C 0.281 3.719 18 O -0.281 6.281 19 C -0.136 4.136 20 C -0.076 4.076 21 C -0.135 4.135 22 C -0.109 4.109 23 C -0.076 4.076 24 Cl -0.044 7.044 25 C -0.089 4.089 26 C -0.138 4.138 27 H 0.079 0.921 28 H 0.144 0.856 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.161 0.839 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.990 -15.338 6.720 17.214 hybrid contribution 0.231 0.574 0.040 0.620 sum -3.759 -14.764 6.760 16.667 Atomic orbital electron populations 1.70034 1.05896 1.27559 1.46473 1.25247 0.95816 0.98686 0.96746 0.85818 0.78709 0.79978 0.79126 1.19573 1.20321 1.19559 1.21242 0.91674 0.80930 1.52746 0.89294 1.83990 1.34069 1.11269 1.79109 1.19133 0.90171 0.87997 0.93284 1.21292 0.93812 0.98981 1.09524 1.20597 0.98394 0.92287 0.99272 1.20626 0.92764 0.97088 1.09677 1.18423 0.93214 0.91421 1.02352 1.22646 0.90963 0.95614 0.91952 1.23260 1.01135 1.01456 1.01295 1.20340 0.84086 0.85518 0.81949 1.90897 1.47766 1.30222 1.59265 1.20626 0.97506 0.95618 0.99869 1.21618 0.96027 0.97732 0.92263 1.21157 0.94257 0.97875 1.00203 1.21254 1.00037 0.92659 0.96909 1.20814 0.94029 0.91516 1.01246 1.98369 1.65312 1.43596 1.97074 1.21303 0.91942 0.97957 0.97737 1.20060 0.98426 0.89497 1.05784 0.92120 0.85620 0.87396 0.87539 0.85054 0.84992 0.83893 0.84421 0.84720 0.84097 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.77 13.67 55.48 0.76 -25.01 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 8 H 0.09 2.36 5.19 -52.49 -0.27 2.08 16 9 O -0.18 -5.31 9.75 -0.02 0.00 -5.31 16 10 C 0.15 3.70 6.64 -39.18 -0.26 3.44 16 11 C -0.22 -4.88 9.17 -39.27 -0.36 -5.24 16 12 C -0.09 -1.65 10.02 -39.68 -0.40 -2.05 16 13 C -0.18 -3.23 9.79 -39.05 -0.38 -3.61 16 14 C -0.05 -0.99 4.55 -105.08 -0.48 -1.47 16 15 C 0.01 0.09 9.82 -37.11 -0.36 -0.27 16 16 C -0.25 -3.29 9.38 -37.50 -0.35 -3.64 16 17 C 0.40 6.42 6.11 -32.41 -0.20 6.22 16 18 O -0.41 -8.23 12.14 5.17 0.06 -8.17 16 19 C -0.13 -1.86 5.88 -104.91 -0.62 -2.47 16 20 C -0.06 -0.79 9.60 -39.18 -0.38 -1.17 16 21 C -0.12 -1.27 10.03 -39.65 -0.40 -1.67 16 22 C -0.09 -0.90 9.82 -39.44 -0.39 -1.29 16 23 C -0.05 -0.53 6.31 -39.55 -0.25 -0.78 16 24 Cl -0.07 -0.69 28.95 -51.86 -1.50 -2.19 16 25 C -0.07 -0.80 9.23 -39.14 -0.36 -1.16 16 26 C -0.12 -2.63 6.54 -38.90 -0.25 -2.88 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.13 2.81 5.62 -52.48 -0.29 2.52 16 29 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 30 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.13 1.22 6.36 -52.49 -0.33 0.89 16 33 H 0.14 2.11 7.65 -52.48 -0.40 1.70 16 34 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.14 1.29 6.24 -52.48 -0.33 0.97 16 37 H 0.11 2.45 6.99 -52.49 -0.37 2.08 16 LS Contribution 339.90 15.07 5.12 5.12 Total: -1.00 -33.09 339.90 -9.07 -42.16 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -3.25 Total: 5.44 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -5.24 Total: -27.92 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.76 Total: -25.01 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.06 Total: -13.48 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.09 -9.07 -42.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727744404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.296 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds