Wall clock time and date at job start Tue Mar 31 2020 14:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86796 * 120.00265 * 2 1 4 4 H 1.48505 * 109.46989 * 240.00028 * 3 2 1 5 5 H 1.48506 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47271 * 119.99759 * 3 2 1 7 7 C 1.38654 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00292 * 180.02562 * 7 2 1 9 9 O 1.34833 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.35770 * 116.99752 * 185.05360 * 9 7 2 11 11 C 1.39055 * 119.98097 * 354.39575 * 10 9 7 12 12 C 1.38254 * 120.28852 * 179.97438 * 11 10 9 13 13 C 1.37959 * 120.25323 * 0.02562 * 12 11 10 14 14 C 1.39935 * 119.95435 * 359.97438 * 13 12 11 15 15 C 1.47113 * 120.13785 * 179.97438 * 14 13 12 16 16 C 1.35076 * 119.99881 * 136.98407 * 15 14 13 17 17 C 1.46226 * 119.99656 * 348.73340 * 16 15 14 18 18 O 1.21719 * 120.00328 * 353.47853 * 17 16 15 19 19 C 1.47915 * 119.99581 * 173.47480 * 17 16 15 20 20 C 1.39633 * 120.13825 * 179.97438 * 19 17 16 21 21 C 1.37920 * 119.87838 * 180.02562 * 20 19 17 22 22 C 1.38380 * 120.16170 * 0.27937 * 21 20 19 23 23 C 1.38468 * 120.28206 * 359.44290 * 22 21 20 24 24 Cl 1.73600 * 119.94034 * 180.30487 * 23 22 21 25 25 C 1.38080 * 120.12086 * 0.55357 * 23 22 21 26 26 C 1.38514 * 119.98013 * 174.65445 * 10 9 7 27 27 H 0.97005 * 120.00092 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.85412 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.87900 * 179.97438 * 12 11 10 30 30 H 1.08001 * 120.02434 * 179.97438 * 13 12 11 31 31 H 1.08000 * 120.00529 * 316.98722 * 15 14 13 32 32 H 1.08002 * 120.00313 * 168.73008 * 16 15 14 33 33 H 1.08004 * 120.06388 * 0.02562 * 20 19 17 34 34 H 1.08004 * 119.91983 * 179.97438 * 21 20 19 35 35 H 1.08001 * 119.85889 * 179.72788 * 22 21 20 36 36 H 1.08003 * 120.08468 * 179.74233 * 25 23 22 37 37 H 1.07997 * 120.12437 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0887 -1.2009 0.0010 9 8 1.3345 -2.3684 0.0005 10 6 2.0698 -3.5047 0.1076 11 6 3.4587 -3.4376 0.0935 12 6 4.2137 -4.5906 0.2026 13 6 3.5950 -5.8175 0.3260 14 6 2.1980 -5.8971 0.3415 15 6 1.5340 -7.2033 0.4723 16 6 0.4703 -7.3410 1.2934 17 6 0.1289 -6.2736 2.2327 18 8 0.8682 -5.3151 2.3597 19 6 -1.1151 -6.3588 3.0285 20 6 -1.4437 -5.3415 3.9267 21 6 -2.6047 -5.4266 4.6664 22 6 -3.4409 -6.5200 4.5245 23 6 -3.1244 -7.5299 3.6315 24 17 -4.1838 -8.8937 3.4549 25 6 -1.9651 -7.4566 2.8851 26 6 1.4361 -4.7307 0.2256 27 1 -0.4850 0.8401 -0.0004 28 1 3.9497 -2.4805 -0.0032 29 1 5.2920 -4.5309 0.1905 30 1 4.1883 -6.7159 0.4106 31 1 1.8969 -8.0522 -0.0881 32 1 -0.1280 -8.2394 1.2561 33 1 -0.7900 -4.4895 4.0421 34 1 -2.8594 -4.6403 5.3616 35 1 -4.3466 -6.5838 5.1094 36 1 -1.7167 -8.2466 2.1918 37 1 0.3575 -4.7848 0.2329 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727744404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:53 Heat of formation + Delta-G solvation = -4.566451 kcal Electronic energy + Delta-G solvation = -23878.227756 eV Core-core repulsion = 20191.519671 eV Total energy + Delta-G solvation = -3686.708085 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.38921 -40.54885 -39.48306 -38.07921 -37.40856 -34.72440 -34.21375 -32.78562 -31.74379 -31.01122 -30.15682 -27.36425 -26.24405 -24.31674 -23.55099 -22.96351 -22.25087 -20.38769 -19.22622 -19.04599 -18.35322 -16.91573 -16.85637 -16.70692 -16.40448 -16.12729 -15.94602 -15.61857 -15.52211 -15.27901 -15.03643 -14.59715 -14.42473 -14.23450 -14.04885 -13.65005 -13.55907 -13.10995 -12.90279 -12.59688 -12.56984 -12.48672 -12.33911 -12.28009 -12.16126 -12.01600 -11.23953 -10.89892 -10.79148 -10.66236 -10.13772 -9.84597 -9.09211 -8.93855 -8.46098 -6.14285 -0.70485 0.04404 0.11521 0.79650 0.99151 1.03255 1.31867 1.43658 1.48721 1.98814 2.17642 2.72817 2.85960 3.03362 3.19854 3.49519 3.68058 3.88273 3.93963 4.04688 4.10563 4.21044 4.29874 4.35177 4.42993 4.49594 4.53697 4.70177 4.77704 4.93367 5.00349 5.07260 5.12014 5.17513 5.26876 5.30839 5.44853 5.61135 5.67514 5.74269 5.74720 6.03225 6.22387 6.66209 6.97997 7.81715 8.77516 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.003278 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.974508 B = 8538.512179 C =10232.942567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 1.018 2.982 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.413 4.413 8 H 0.098 0.902 9 O -0.238 6.238 10 C 0.102 3.898 11 C -0.235 4.235 12 C -0.086 4.086 13 C -0.165 4.165 14 C -0.046 4.046 15 C -0.002 4.002 16 C -0.238 4.238 17 C 0.394 3.606 18 O -0.467 6.467 19 C -0.159 4.159 20 C -0.085 4.085 21 C -0.116 4.116 22 C -0.080 4.080 23 C -0.054 4.054 24 Cl -0.055 7.055 25 C -0.062 4.062 26 C -0.131 4.131 27 H 0.271 0.729 28 H 0.116 0.884 29 H 0.148 0.852 30 H 0.158 0.842 31 H 0.187 0.813 32 H 0.181 0.819 33 H 0.113 0.887 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.065 -19.594 6.993 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.222 4.222 3 Si 0.837 3.163 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.116 0.884 9 O -0.146 6.146 10 C 0.053 3.947 11 C -0.255 4.255 12 C -0.103 4.103 13 C -0.183 4.183 14 C -0.047 4.047 15 C -0.020 4.020 16 C -0.256 4.256 17 C 0.276 3.724 18 O -0.346 6.346 19 C -0.160 4.160 20 C -0.103 4.103 21 C -0.134 4.134 22 C -0.098 4.098 23 C -0.081 4.081 24 Cl -0.026 7.026 25 C -0.080 4.080 26 C -0.151 4.151 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.165 0.835 30 H 0.176 0.824 31 H 0.204 0.796 32 H 0.198 0.802 33 H 0.132 0.868 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.185 0.815 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.192 -19.052 7.025 20.555 hybrid contribution -0.052 1.302 0.056 1.304 sum -3.244 -17.750 7.081 19.384 Atomic orbital electron populations 1.70195 1.08021 1.28672 1.49249 1.26596 0.96888 1.02691 0.96001 0.84662 0.77416 0.74287 0.79900 1.17956 1.19414 1.18392 1.21760 0.92390 0.81613 1.53176 0.88428 1.83944 1.35869 1.12533 1.82234 1.19720 0.91660 0.87856 0.95467 1.21406 0.93014 1.00323 1.10713 1.21064 1.00233 0.91431 0.97612 1.21286 0.92740 0.98384 1.05889 1.18957 0.93943 0.92334 0.99435 1.23004 0.90956 0.94663 0.93391 1.23660 1.00691 1.01696 0.99576 1.21130 0.84086 0.85246 0.81977 1.90886 1.49804 1.32528 1.61345 1.20572 0.97803 0.97026 1.00625 1.21606 0.97206 0.97489 0.94011 1.21367 0.93211 0.98925 0.99901 1.21600 1.00348 0.91563 0.96283 1.20959 0.94039 0.92120 1.00946 1.98381 1.64619 1.42618 1.96993 1.21475 0.91433 0.97360 0.97774 1.20147 0.97846 0.90276 1.06807 0.91967 0.86596 0.83462 0.82419 0.79636 0.80174 0.86848 0.82401 0.81815 0.81517 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.10 13.67 21.61 0.30 -58.80 16 2 C -0.02 -1.49 5.49 84.83 0.47 -1.02 16 3 Si 1.02 44.81 29.55 68.60 2.03 46.84 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.41 -25.53 9.49 67.92 0.64 -24.89 16 8 H 0.10 5.55 5.19 -2.91 -0.02 5.54 16 9 O -0.24 -15.42 9.75 -23.00 -0.22 -15.65 16 10 C 0.10 5.55 6.64 22.53 0.15 5.70 16 11 C -0.24 -11.05 9.17 22.47 0.21 -10.85 16 12 C -0.09 -3.10 10.02 22.21 0.22 -2.88 16 13 C -0.16 -5.29 9.79 22.61 0.22 -5.06 16 14 C -0.05 -1.65 4.55 -20.16 -0.09 -1.74 16 15 C 0.00 -0.06 9.82 23.87 0.23 0.18 16 16 C -0.24 -5.53 9.38 23.62 0.22 -5.31 16 17 C 0.39 12.76 6.11 26.91 0.16 12.93 16 18 O -0.47 -20.19 12.14 -4.41 -0.05 -20.24 16 19 C -0.16 -4.44 5.88 -20.05 -0.12 -4.56 16 20 C -0.08 -2.46 9.60 22.53 0.22 -2.25 16 21 C -0.12 -2.51 10.03 22.23 0.22 -2.29 16 22 C -0.08 -1.43 9.82 22.36 0.22 -1.21 16 23 C -0.05 -1.03 6.31 22.29 0.14 -0.89 16 24 Cl -0.06 -0.88 28.95 -2.72 -0.08 -0.96 16 25 C -0.06 -1.28 9.23 22.56 0.21 -1.07 16 26 C -0.13 -6.17 6.54 22.71 0.15 -6.02 16 27 H 0.27 15.90 8.31 -92.70 -0.77 15.13 16 28 H 0.12 5.51 5.62 -2.91 -0.02 5.49 16 29 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 30 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 31 H 0.19 2.51 8.06 -2.91 -0.02 2.48 16 32 H 0.18 2.38 6.36 -2.91 -0.02 2.36 16 33 H 0.11 3.88 7.65 -2.91 -0.02 3.85 16 34 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 35 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.17 2.41 6.24 -2.91 -0.02 2.39 16 37 H 0.09 4.33 6.99 -2.91 -0.02 4.31 16 Total: -1.00 -83.30 339.90 6.57 -76.74 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 1.12 Total: 23.30 kcal Atomic # 6 Polarization: -54.70 SS G_CDS: 3.48 Total: -51.23 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.30 Total: -58.80 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.28 Total: -35.89 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -83.30 6.57 -76.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727744404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.172 kcal (2) G-P(sol) polarization free energy of solvation -83.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds