Wall clock time and date at job start Tue Mar 31 2020 15:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39855 * 120.06938 * 57.66187 * 3 2 1 5 5 C 1.37600 * 119.92740 * 179.78632 * 4 3 2 6 6 C 1.39262 * 120.07057 * 0.46883 * 5 4 3 7 7 S 1.76203 * 119.92918 * 179.76550 * 6 5 4 8 8 C 1.81400 * 102.99888 * 0.02562 * 7 6 5 9 9 C 1.50708 * 109.46755 * 180.02562 * 8 7 6 10 10 O 1.21294 * 120.00145 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99483 * 179.97438 * 9 8 7 12 12 C 1.40599 * 119.99614 * 179.97438 * 11 9 8 13 13 C 1.40641 * 126.08226 * 359.69646 * 12 11 9 14 14 N 1.30912 * 108.38909 * 179.80925 * 13 12 11 15 15 N 1.40073 * 108.40285 * 0.44718 * 14 13 12 16 16 C 1.37321 * 126.07133 * 179.69807 * 15 14 13 17 17 H 1.07994 * 120.00338 * 174.15439 * 16 15 14 18 18 C 1.38997 * 119.99537 * 354.15129 * 16 15 14 19 19 N 1.31286 * 120.00142 * 5.93720 * 18 16 15 20 20 Si 1.86798 * 119.99655 * 185.94223 * 18 16 15 21 21 H 1.48503 * 109.47268 * 94.97559 * 20 18 16 22 22 H 1.48498 * 109.46978 * 214.97830 * 20 18 16 23 23 H 1.48507 * 109.47124 * 334.97884 * 20 18 16 24 24 C 1.35681 * 126.08122 * 179.97438 * 12 11 9 25 25 C 1.39251 * 120.14197 * 359.77957 * 6 5 4 26 26 C 1.37612 * 120.06936 * 359.97438 * 25 6 5 27 27 H 1.07995 * 120.03306 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.96752 * 180.20298 * 5 4 3 29 29 H 1.09004 * 109.47185 * 299.99803 * 8 7 6 30 30 H 1.08989 * 109.47628 * 60.00290 * 8 7 6 31 31 H 0.96997 * 120.00262 * 0.02562 * 11 9 8 32 32 H 1.08000 * 125.80689 * 359.96145 * 13 12 11 33 33 H 0.96999 * 120.00445 * 179.97438 * 19 18 16 34 34 H 1.08005 * 126.24254 * 359.97438 * 24 12 11 35 35 H 1.07995 * 119.96760 * 179.97438 * 25 6 5 36 36 H 1.08003 * 120.03539 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2690 -0.6465 -1.0226 5 6 4.6449 -0.6403 -1.0221 6 6 5.3395 0.0011 0.0005 7 16 7.1015 0.0014 0.0007 8 6 7.5099 -0.9369 -1.4970 9 6 9.0075 -1.0273 -1.6404 10 8 9.7282 -0.5093 -0.8137 11 7 9.5457 -1.6838 -2.6872 12 6 10.9428 -1.7677 -2.8212 13 6 11.8937 -1.2119 -1.9466 14 7 13.0882 -1.5017 -2.3970 15 7 12.9480 -2.2421 -3.5778 16 6 13.9714 -2.7283 -4.3536 17 1 13.7536 -3.3687 -5.1955 18 6 15.2877 -2.3960 -4.0554 19 7 15.5624 -1.7152 -2.9670 20 14 16.6657 -2.9182 -5.2033 21 1 16.9720 -1.8112 -6.1447 22 1 17.8773 -3.2408 -4.4076 23 1 16.2433 -4.1176 -5.9704 24 6 11.6135 -2.3948 -3.8201 25 6 4.6444 0.6419 1.0229 26 6 3.2683 0.6436 1.0254 27 1 2.7309 -1.1479 -1.8134 28 1 5.1869 -1.1370 -1.8133 29 1 7.0912 -1.9406 -1.4225 30 1 7.0912 -0.4322 -2.3675 31 1 8.9693 -2.0978 -3.3484 32 1 11.6755 -0.6448 -1.0537 33 1 16.4811 -1.4836 -2.7587 34 1 11.1719 -2.9193 -4.6546 35 1 5.1859 1.1380 1.8147 36 1 2.7298 1.1404 1.8189 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728518518.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:26 Heat of formation + Delta-G solvation = 111.425054 kcal Electronic energy + Delta-G solvation = -22449.060131 eV Core-core repulsion = 18834.011024 eV Total energy + Delta-G solvation = -3615.049107 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.02386 -39.68811 -38.67781 -36.76015 -34.37047 -33.27698 -32.05948 -31.69497 -30.58966 -29.95894 -27.51566 -24.88685 -24.52476 -23.22617 -21.31748 -20.57498 -19.54656 -19.37794 -18.12189 -17.62235 -16.52654 -16.03988 -15.63168 -15.58038 -15.47007 -15.03834 -14.78713 -14.45219 -14.18298 -13.95785 -13.63043 -13.61058 -13.33515 -13.15257 -13.07300 -12.92238 -12.62272 -12.20198 -11.73536 -11.66244 -11.50595 -11.31775 -11.00039 -10.56601 -10.46038 -10.29243 -10.10646 -9.58546 -9.46068 -9.24461 -8.88041 -8.13258 -7.69812 -6.80744 -6.61924 -4.29611 0.21203 0.85076 1.00426 2.04801 2.29557 2.46784 2.61785 2.96074 3.01568 3.07269 3.39952 3.40053 3.51147 3.58983 3.81283 4.30616 4.30965 4.35443 4.56457 4.73255 4.74255 4.85100 4.95024 4.95737 5.07162 5.09403 5.44163 5.57668 5.73265 5.81243 6.16011 6.22300 6.35378 6.77753 6.87904 6.97874 7.10953 7.15796 7.78893 8.00532 8.18434 8.49369 8.69504 9.30728 9.59478 10.34226 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.050100 B = 0.001811 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.745874 B =15456.064975 C =15994.606293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.258 3.742 3 C -0.049 4.049 4 C -0.045 4.045 5 C -0.143 4.143 6 C -0.071 4.071 7 S 0.000 6.000 8 C -0.153 4.153 9 C 0.514 3.486 10 O -0.518 6.518 11 N -0.615 5.615 12 C -0.065 4.065 13 C -0.030 4.030 14 N -0.261 5.261 15 N -0.141 5.141 16 C -0.325 4.325 17 H 0.117 0.883 18 C 0.047 3.953 19 N -0.768 5.768 20 Si 0.935 3.065 21 H -0.271 1.271 22 H -0.275 1.275 23 H -0.264 1.264 24 C -0.081 4.081 25 C -0.105 4.105 26 C -0.047 4.047 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.399 0.601 32 H 0.176 0.824 33 H 0.276 0.724 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.268 1.288 2.088 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.057 4.057 3 C -0.056 4.056 4 C -0.067 4.067 5 C -0.168 4.168 6 C -0.186 4.186 7 S 0.247 5.753 8 C -0.305 4.305 9 C 0.297 3.703 10 O -0.394 6.394 11 N -0.257 5.257 12 C -0.170 4.170 13 C -0.205 4.205 14 N -0.092 5.092 15 N 0.092 4.908 16 C -0.457 4.457 17 H 0.135 0.865 18 C -0.171 4.171 19 N -0.394 5.394 20 Si 0.759 3.241 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.232 4.232 25 C -0.129 4.129 26 C -0.070 4.070 27 H 0.153 0.847 28 H 0.152 0.848 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.232 0.768 32 H 0.193 0.807 33 H 0.086 0.914 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.082 2.332 3.752 18.614 hybrid contribution -1.200 -1.216 -2.085 2.696 sum -19.283 1.116 1.667 19.387 Atomic orbital electron populations 1.81269 1.12114 1.08720 1.07830 1.25704 0.92624 0.93625 0.93736 1.16015 0.84247 1.05949 0.99352 1.21046 0.93727 0.95622 0.96339 1.21132 0.94269 1.02286 0.99099 1.22674 0.99738 0.98810 0.97395 1.86542 0.93827 1.65775 1.29119 1.23882 0.99290 1.05430 1.01864 1.19208 0.87665 0.80764 0.82640 1.90666 1.61001 1.46290 1.41442 1.42307 1.05639 1.52880 1.24910 1.17226 0.81293 1.15693 1.02830 1.24114 0.89235 1.05280 1.01903 1.78278 1.18802 1.15071 0.97048 1.44568 1.02615 1.29508 1.14092 1.19899 0.84351 1.31229 1.10200 0.86534 1.25653 0.99039 0.95754 0.96615 1.70211 1.20702 1.28160 1.20311 0.85808 0.79520 0.79330 0.79479 1.19601 1.20051 1.18762 1.21248 0.85353 1.13377 1.03270 1.20666 0.93274 1.00554 0.98393 1.21080 0.93661 0.95846 0.96369 0.84734 0.84779 0.86474 0.86470 0.76829 0.80678 0.91371 0.83640 0.84186 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.69 18.54 41.83 0.78 -3.91 16 2 C 0.26 2.22 15.33 -22.48 -0.34 1.87 16 3 C -0.05 -0.33 5.74 -106.77 -0.61 -0.94 16 4 C -0.04 -0.27 9.75 -39.21 -0.38 -0.65 16 5 C -0.14 -0.92 9.34 -39.43 -0.37 -1.28 16 6 C -0.07 -0.56 6.13 -38.82 -0.24 -0.80 16 7 S 0.00 0.00 21.06 -107.50 -2.26 -2.27 16 8 C -0.15 -1.43 4.81 36.01 0.17 -1.26 16 9 C 0.51 7.78 7.82 -10.98 -0.09 7.70 16 10 O -0.52 -10.15 13.02 5.55 0.07 -10.08 16 11 N -0.61 -9.61 5.47 -10.00 -0.05 -9.66 16 12 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 13 C -0.03 -0.75 10.85 -17.04 -0.18 -0.94 16 14 N -0.26 -7.39 10.42 30.80 0.32 -7.07 16 15 N -0.14 -3.74 3.74 -11.41 -0.04 -3.78 16 16 C -0.32 -8.35 10.24 -14.81 -0.15 -8.50 16 17 H 0.12 2.66 7.84 -52.49 -0.41 2.25 16 18 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 19 N -0.77 -21.01 11.84 55.50 0.66 -20.35 16 20 Si 0.93 18.43 29.56 -169.99 -5.02 13.40 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 23 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 24 C -0.08 -1.81 11.49 -16.39 -0.19 -2.00 16 25 C -0.10 -0.71 9.77 -39.43 -0.39 -1.10 16 26 C -0.05 -0.28 9.75 -39.21 -0.38 -0.66 16 27 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 28 H 0.13 0.62 5.86 -52.49 -0.31 0.31 16 29 H 0.12 0.78 7.74 -51.92 -0.40 0.38 16 30 H 0.12 0.79 7.74 -51.93 -0.40 0.38 16 31 H 0.40 4.42 8.83 -40.82 -0.36 4.06 16 32 H 0.18 4.40 5.92 -52.49 -0.31 4.09 16 33 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.15 2.66 8.06 -52.48 -0.42 2.24 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 LS Contribution 342.82 15.07 5.17 5.17 Total: -1.00 -34.28 342.82 -7.24 -41.52 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -3.02 Total: 6.49 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -3.83 Total: -9.45 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 1.66 Total: -44.78 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.07 Total: -10.08 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.40 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.26 Total: -2.27 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.28 -7.24 -41.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728518518.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.944 kcal (2) G-P(sol) polarization free energy of solvation -34.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds