Wall clock time and date at job start Tue Mar 31 2020 15:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39855 * 120.06938 * 57.66187 * 3 2 1 5 5 C 1.37600 * 119.92740 * 179.78632 * 4 3 2 6 6 C 1.39262 * 120.07057 * 0.46883 * 5 4 3 7 7 S 1.76203 * 119.92918 * 179.76550 * 6 5 4 8 8 C 1.81400 * 102.99888 * 0.02562 * 7 6 5 9 9 C 1.50708 * 109.46755 * 180.02562 * 8 7 6 10 10 O 1.21294 * 120.00145 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99483 * 179.97438 * 9 8 7 12 12 C 1.40599 * 119.99614 * 179.97438 * 11 9 8 13 13 C 1.40641 * 126.08226 * 359.69646 * 12 11 9 14 14 N 1.30912 * 108.38909 * 179.80925 * 13 12 11 15 15 N 1.40073 * 108.40285 * 0.44718 * 14 13 12 16 16 C 1.37321 * 126.07133 * 179.69807 * 15 14 13 17 17 H 1.07994 * 120.00338 * 174.15439 * 16 15 14 18 18 C 1.38997 * 119.99537 * 354.15129 * 16 15 14 19 19 N 1.31286 * 120.00142 * 5.93720 * 18 16 15 20 20 Si 1.86798 * 119.99655 * 185.94223 * 18 16 15 21 21 H 1.48503 * 109.47268 * 94.97559 * 20 18 16 22 22 H 1.48498 * 109.46978 * 214.97830 * 20 18 16 23 23 H 1.48507 * 109.47124 * 334.97884 * 20 18 16 24 24 C 1.35681 * 126.08122 * 179.97438 * 12 11 9 25 25 C 1.39251 * 120.14197 * 359.77957 * 6 5 4 26 26 C 1.37612 * 120.06936 * 359.97438 * 25 6 5 27 27 H 1.07995 * 120.03306 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.96752 * 180.20298 * 5 4 3 29 29 H 1.09004 * 109.47185 * 299.99803 * 8 7 6 30 30 H 1.08989 * 109.47628 * 60.00290 * 8 7 6 31 31 H 0.96997 * 120.00262 * 0.02562 * 11 9 8 32 32 H 1.08000 * 125.80689 * 359.96145 * 13 12 11 33 33 H 0.96999 * 120.00445 * 179.97438 * 19 18 16 34 34 H 1.08005 * 126.24254 * 359.97438 * 24 12 11 35 35 H 1.07995 * 119.96760 * 179.97438 * 25 6 5 36 36 H 1.08003 * 120.03539 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2690 -0.6465 -1.0226 5 6 4.6449 -0.6403 -1.0221 6 6 5.3395 0.0011 0.0005 7 16 7.1015 0.0014 0.0007 8 6 7.5099 -0.9369 -1.4970 9 6 9.0075 -1.0273 -1.6404 10 8 9.7282 -0.5093 -0.8137 11 7 9.5457 -1.6838 -2.6872 12 6 10.9428 -1.7677 -2.8212 13 6 11.8937 -1.2119 -1.9466 14 7 13.0882 -1.5017 -2.3970 15 7 12.9480 -2.2421 -3.5778 16 6 13.9714 -2.7283 -4.3536 17 1 13.7536 -3.3687 -5.1955 18 6 15.2877 -2.3960 -4.0554 19 7 15.5624 -1.7152 -2.9670 20 14 16.6657 -2.9182 -5.2033 21 1 16.9720 -1.8112 -6.1447 22 1 17.8773 -3.2408 -4.4076 23 1 16.2433 -4.1176 -5.9704 24 6 11.6135 -2.3948 -3.8201 25 6 4.6444 0.6419 1.0229 26 6 3.2683 0.6436 1.0254 27 1 2.7309 -1.1479 -1.8134 28 1 5.1869 -1.1370 -1.8133 29 1 7.0912 -1.9406 -1.4225 30 1 7.0912 -0.4322 -2.3675 31 1 8.9693 -2.0978 -3.3484 32 1 11.6755 -0.6448 -1.0537 33 1 16.4811 -1.4836 -2.7587 34 1 11.1719 -2.9193 -4.6546 35 1 5.1859 1.1380 1.8147 36 1 2.7298 1.1404 1.8189 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728518518.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:26 Heat of formation + Delta-G solvation = 89.471754 kcal Electronic energy + Delta-G solvation = -22450.012098 eV Core-core repulsion = 18834.011024 eV Total energy + Delta-G solvation = -3616.001074 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68969 -40.21660 -40.17237 -37.47395 -35.93746 -34.98019 -32.70414 -32.29498 -32.16669 -31.16678 -29.13706 -26.67772 -25.12860 -23.77318 -22.92572 -22.10455 -21.19863 -19.95145 -19.38210 -18.81480 -17.68005 -17.37233 -17.11573 -16.64493 -16.46556 -15.80919 -15.65863 -15.44786 -15.28121 -15.08387 -14.89320 -14.76006 -14.38465 -14.11090 -14.05498 -13.85354 -13.47357 -13.40104 -13.28847 -12.94633 -12.82292 -12.75371 -12.13455 -12.05638 -11.83937 -11.13292 -11.01801 -10.85637 -10.74219 -10.70568 -10.08299 -10.04421 -8.54073 -8.45901 -8.40546 -6.22850 -0.33545 0.26374 0.39018 1.21554 1.36911 1.41628 1.50373 1.59399 1.63250 1.86547 1.87854 2.07273 2.30909 2.52867 2.85459 2.89210 2.92441 3.10030 3.79288 3.86856 3.92788 4.07673 4.23396 4.30374 4.46487 4.49185 4.62585 4.63871 5.01879 5.02874 5.08399 5.08914 5.24511 5.31625 5.33108 5.46473 5.74261 5.98009 6.33047 6.46348 6.70947 6.75925 7.36007 7.49149 7.70686 8.53746 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.050100 B = 0.001811 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.745874 B =15456.064975 C =15994.606293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.283 3.717 3 C -0.055 4.055 4 C -0.039 4.039 5 C -0.141 4.141 6 C -0.070 4.070 7 S -0.065 6.065 8 C -0.132 4.132 9 C 0.512 3.488 10 O -0.565 6.565 11 N -0.607 5.607 12 C -0.045 4.045 13 C -0.058 4.058 14 N -0.314 5.314 15 N -0.170 5.170 16 C -0.355 4.355 17 H 0.142 0.858 18 C -0.006 4.006 19 N -0.825 5.825 20 Si 1.018 2.982 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.242 1.242 24 C -0.076 4.076 25 C -0.111 4.111 26 C -0.041 4.041 27 H 0.157 0.843 28 H 0.158 0.842 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.425 0.575 32 H 0.167 0.833 33 H 0.276 0.724 34 H 0.191 0.809 35 H 0.145 0.855 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.443 -0.046 -0.104 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.031 4.031 3 C -0.062 4.062 4 C -0.061 4.061 5 C -0.165 4.165 6 C -0.185 4.185 7 S 0.181 5.819 8 C -0.282 4.282 9 C 0.298 3.702 10 O -0.444 6.444 11 N -0.253 5.253 12 C -0.152 4.152 13 C -0.233 4.233 14 N -0.146 5.146 15 N 0.061 4.939 16 C -0.486 4.486 17 H 0.159 0.841 18 C -0.218 4.218 19 N -0.453 5.453 20 Si 0.837 3.163 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.165 1.165 24 C -0.226 4.226 25 C -0.135 4.135 26 C -0.064 4.064 27 H 0.174 0.826 28 H 0.175 0.825 29 H 0.172 0.828 30 H 0.172 0.828 31 H 0.263 0.737 32 H 0.184 0.816 33 H 0.085 0.915 34 H 0.208 0.792 35 H 0.163 0.837 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.344 0.977 1.537 20.425 hybrid contribution -0.751 -0.753 -1.310 1.687 sum -21.095 0.224 0.228 21.097 Atomic orbital electron populations 1.81299 1.13525 1.10466 1.09454 1.25890 0.92723 0.92210 0.92319 1.16133 0.83243 1.06639 1.00136 1.21284 0.93629 0.94876 0.96338 1.21391 0.94418 1.01669 0.99000 1.22554 0.97478 0.99955 0.98513 1.86869 0.97116 1.67100 1.30791 1.23773 0.94308 1.07761 1.02380 1.20215 0.90103 0.78748 0.81145 1.90664 1.63000 1.47746 1.43009 1.42234 1.03325 1.53519 1.26195 1.17280 0.83901 1.13093 1.00882 1.24175 0.90054 1.06455 1.02661 1.78163 1.20717 1.16845 0.98851 1.44840 1.04302 1.30578 1.14139 1.20617 0.84941 1.32104 1.10953 0.84093 1.26860 1.01762 0.95170 0.97973 1.70395 1.21224 1.30684 1.23004 0.84598 0.75317 0.79503 0.76921 1.19263 1.20305 1.16473 1.22037 0.84145 1.12328 1.04104 1.20808 0.93607 1.00594 0.98530 1.21234 0.93286 0.95325 0.96551 0.82552 0.82453 0.82812 0.82820 0.73741 0.81617 0.91456 0.79246 0.83712 0.82806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.92 18.54 19.00 0.35 -9.57 16 2 C 0.28 4.33 15.33 88.33 1.35 5.68 16 3 C -0.05 -0.59 5.74 -21.25 -0.12 -0.71 16 4 C -0.04 -0.32 9.75 22.51 0.22 -0.10 16 5 C -0.14 -1.23 9.34 22.37 0.21 -1.03 16 6 C -0.07 -0.93 6.13 22.76 0.14 -0.79 16 7 S -0.07 -1.28 21.06 -56.49 -1.19 -2.47 16 8 C -0.13 -1.99 4.81 71.24 0.34 -1.64 16 9 C 0.51 14.57 7.82 87.66 0.69 15.26 16 10 O -0.57 -22.41 13.02 -3.07 -0.04 -22.45 16 11 N -0.61 -17.41 5.47 -303.93 -1.66 -19.07 16 12 C -0.05 -1.92 6.90 37.73 0.26 -1.66 16 13 C -0.06 -3.04 10.85 85.42 0.93 -2.12 16 14 N -0.31 -18.54 10.42 -56.47 -0.59 -19.13 16 15 N -0.17 -9.12 3.74 -190.01 -0.71 -9.83 16 16 C -0.36 -18.32 10.24 84.02 0.86 -17.46 16 17 H 0.14 6.24 7.84 -2.91 -0.02 6.22 16 18 C -0.01 -0.31 5.50 84.96 0.47 0.16 16 19 N -0.83 -47.15 11.84 21.66 0.26 -46.89 16 20 Si 1.02 37.82 29.56 68.60 2.03 39.85 16 21 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 22 H -0.28 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.24 -8.03 7.11 99.48 0.71 -7.32 16 24 C -0.08 -3.27 11.49 83.38 0.96 -2.32 16 25 C -0.11 -1.30 9.77 22.37 0.22 -1.08 16 26 C -0.04 -0.40 9.75 22.51 0.22 -0.18 16 27 H 0.16 0.60 8.06 -2.91 -0.02 0.57 16 28 H 0.16 0.59 5.86 -2.91 -0.02 0.57 16 29 H 0.15 1.26 7.74 -2.39 -0.02 1.24 16 30 H 0.15 1.27 7.74 -2.40 -0.02 1.25 16 31 H 0.42 7.60 8.83 -92.71 -0.82 6.78 16 32 H 0.17 8.85 5.92 -2.91 -0.02 8.83 16 33 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.19 6.23 8.06 -2.91 -0.02 6.21 16 35 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.15 0.90 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -81.21 342.82 5.53 -75.68 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.34 Total: 21.88 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 6.74 Total: -7.99 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -2.35 Total: -104.50 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.04 Total: -22.45 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -1.19 Total: -2.47 kcal Total: -81.21 5.53 -75.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728518518.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.150 kcal (2) G-P(sol) polarization free energy of solvation -81.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds