Wall clock time and date at job start Tue Mar 31 2020 15:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42096 * 108.57699 * 2 1 4 4 O 1.42097 * 108.57613 * 228.97696 * 2 1 3 5 5 C 1.81398 * 101.92140 * 114.48963 * 2 1 3 6 6 C 1.52997 * 109.46979 * 180.02562 * 5 2 1 7 7 N 1.46506 * 109.47039 * 179.97438 * 6 5 2 8 8 C 1.34777 * 120.00113 * 180.02562 * 7 6 5 9 9 S 1.71202 * 119.99904 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00188 * 180.02562 * 8 7 6 11 11 C 1.39140 * 119.99868 * 185.52011 * 10 8 7 12 12 C 1.39506 * 119.83808 * 42.14833 * 11 10 8 13 13 C 1.36359 * 120.16809 * 180.29823 * 12 11 10 14 14 C 1.40879 * 119.82778 * 359.44981 * 13 12 11 15 15 C 1.41145 * 120.16162 * 180.25390 * 14 13 12 16 16 H 1.07993 * 120.00091 * 205.11841 * 15 14 13 17 17 C 1.39890 * 119.99636 * 25.11431 * 15 14 13 18 18 N 1.30876 * 120.00177 * 17.73033 * 17 15 14 19 19 Si 1.86802 * 119.99504 * 197.72622 * 17 15 14 20 20 H 1.48499 * 109.47227 * 94.74270 * 19 17 15 21 21 H 1.48504 * 109.46852 * 214.74209 * 19 17 15 22 22 H 1.48502 * 109.47138 * 334.74124 * 19 17 15 23 23 C 1.40882 * 119.67811 * 0.54569 * 14 13 12 24 24 C 1.36352 * 119.82913 * 359.73032 * 23 14 13 25 25 H 1.08994 * 109.46982 * 305.51426 * 1 2 3 26 26 H 1.08996 * 109.46684 * 65.51420 * 1 2 3 27 27 H 1.09001 * 109.46871 * 185.51142 * 1 2 3 28 28 H 1.08992 * 109.47211 * 60.00009 * 5 2 1 29 29 H 1.09002 * 109.46595 * 299.99969 * 5 2 1 30 30 H 1.09006 * 109.47273 * 60.00093 * 6 5 2 31 31 H 1.08993 * 109.47447 * 299.99564 * 6 5 2 32 32 H 0.96998 * 119.99959 * 359.97438 * 7 6 5 33 33 H 0.97003 * 120.00098 * 5.51972 * 10 8 7 34 34 H 1.08000 * 119.91647 * 0.02562 * 12 11 10 35 35 H 1.07997 * 120.08756 * 179.71929 * 13 12 11 36 36 H 0.96995 * 120.00288 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.08122 * 179.71464 * 23 14 13 38 38 H 1.07994 * 119.91994 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7055 -0.8185 1.7984 7 7 4.0082 -1.4121 3.1031 8 6 5.2894 -1.5844 3.4842 9 16 6.5632 -1.1090 2.4439 10 7 5.5678 -2.1310 4.6842 11 6 6.8850 -2.2039 5.1267 12 6 7.7411 -1.1185 4.9396 13 6 9.0349 -1.1849 5.3651 14 6 9.5030 -2.3491 6.0056 15 6 10.8394 -2.4234 6.4537 16 1 11.3197 -3.3845 6.5629 17 6 11.5418 -1.2520 6.7562 18 7 10.8925 -0.1347 6.9633 19 14 13.4064 -1.2828 6.8647 20 1 13.9850 -0.8771 5.5587 21 1 13.8564 -0.3397 7.9199 22 1 13.8600 -2.6560 7.2020 23 6 8.6325 -3.4411 6.1911 24 6 7.3430 -3.3622 5.7551 25 1 -0.3633 0.5969 0.8365 26 1 -0.3632 0.4259 -0.9352 27 1 -0.3633 -1.0229 0.0987 28 1 1.7611 -1.7369 1.6664 29 1 1.7611 -0.1171 2.4042 30 1 4.1328 0.1830 1.7473 31 1 4.1336 -1.4368 1.0095 32 1 3.2864 -1.6804 3.6930 33 1 4.8500 -2.4736 5.2395 34 1 7.3795 -0.2249 4.4525 35 1 9.6978 -0.3455 5.2155 36 1 11.3794 0.6774 7.1735 37 1 8.9858 -4.3385 6.6771 38 1 6.6746 -4.1986 5.8962 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729156623.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:02 Heat of formation + Delta-G solvation = -20.909295 kcal Electronic energy + Delta-G solvation = -22201.920344 eV Core-core repulsion = 18684.283989 eV Total energy + Delta-G solvation = -3517.636355 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.25307 -37.55673 -37.39773 -36.43626 -35.45315 -33.39010 -31.49759 -30.11271 -29.55820 -28.88707 -25.36384 -23.80854 -23.53709 -21.23187 -20.62272 -19.32428 -18.25308 -17.61874 -17.37132 -16.83259 -16.73992 -16.28639 -15.53484 -15.32399 -15.08296 -14.94342 -14.06577 -13.91573 -13.79349 -13.73021 -13.09976 -12.84134 -12.73338 -12.47476 -12.38512 -12.11325 -12.06294 -11.82935 -11.57230 -11.31527 -11.16458 -11.13713 -10.94231 -10.62092 -10.60116 -9.87464 -9.59025 -9.25120 -9.08501 -7.74537 -7.49454 -7.06842 -6.83718 -6.35010 -4.36809 -0.56749 1.63551 2.23246 2.35457 2.78773 2.89288 3.07618 3.10924 3.12759 3.22607 3.28873 3.50085 3.88504 3.90749 3.97437 4.11121 4.26018 4.49828 4.58866 4.78132 5.10027 5.28729 5.42093 5.68022 6.02020 6.12689 6.32158 6.49771 6.93150 7.00092 7.05684 7.17122 7.25925 7.55714 7.63003 7.89786 8.03544 8.15943 8.24603 8.61046 8.83544 8.94039 10.10908 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.002271 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.093569 B =12325.155794 C =12798.664603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.435 3.565 3 O -0.927 6.927 4 O -0.928 6.928 5 C -0.640 4.640 6 C 0.144 3.856 7 N -0.697 5.697 8 C 0.539 3.461 9 S -0.632 6.632 10 N -0.587 5.587 11 C -0.041 4.041 12 C -0.037 4.037 13 C -0.163 4.163 14 C 0.120 3.880 15 C -0.449 4.449 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.781 5.781 19 Si 0.910 3.090 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.226 4.226 24 C -0.079 4.079 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.393 0.607 33 H 0.390 0.610 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.283 0.717 37 H 0.096 0.904 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.077 -0.280 -5.819 22.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.613 3.387 3 O -0.924 6.924 4 O -0.925 6.925 5 C -0.767 4.767 6 C 0.019 3.981 7 N -0.331 5.331 8 C 0.181 3.819 9 S -0.504 6.504 10 N -0.206 5.206 11 C -0.133 4.133 12 C -0.059 4.059 13 C -0.184 4.184 14 C 0.117 3.883 15 C -0.478 4.478 16 H 0.099 0.901 17 C -0.145 4.145 18 N -0.405 5.405 19 Si 0.735 3.265 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.247 4.247 24 C -0.100 4.100 25 H 0.147 0.853 26 H 0.151 0.849 27 H 0.147 0.853 28 H 0.156 0.844 29 H 0.157 0.843 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.229 0.771 33 H 0.225 0.775 34 H 0.127 0.873 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.551 0.634 -7.169 21.774 hybrid contribution -1.335 -0.859 1.875 2.457 sum -21.885 -0.226 -5.294 22.518 Atomic orbital electron populations 1.30291 1.26547 1.11638 1.12056 1.07587 0.78325 0.75872 0.76866 1.93644 1.78828 1.34048 1.85923 1.93641 1.78846 1.67077 1.52935 1.30783 1.05650 1.14798 1.25495 1.21136 0.89115 1.02133 0.85721 1.44601 1.04404 1.64205 1.19920 1.22403 0.88634 0.84375 0.86497 1.93400 1.38252 1.68773 1.49958 1.41973 1.09683 1.55055 1.13870 1.16871 0.82850 0.97891 1.15731 1.20461 0.94099 0.96090 0.95210 1.20863 0.94668 1.00312 1.02525 1.17731 0.92423 0.90940 0.87209 1.19656 0.96703 0.93708 1.37719 0.90123 1.25981 1.01223 0.94862 0.92431 1.69844 1.38250 1.00933 1.31495 0.86260 0.81988 0.79360 0.78933 1.19091 1.20229 1.18491 1.20469 0.93120 1.00677 1.10400 1.19967 0.95989 0.93753 1.00258 0.85253 0.84935 0.85271 0.84356 0.84325 0.88175 0.88206 0.77122 0.77485 0.87305 0.86178 0.90595 0.88554 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.26 10.62 101.05 1.07 -0.18 16 2 S 2.43 14.85 5.36 -107.50 -0.58 14.27 16 3 O -0.93 -9.78 18.10 -57.83 -1.05 -10.83 16 4 O -0.93 -9.70 18.10 -57.83 -1.05 -10.75 16 5 C -0.64 -2.91 5.92 37.16 0.22 -2.69 16 6 C 0.14 1.50 5.14 -4.04 -0.02 1.48 16 7 N -0.70 -7.76 5.56 -62.03 -0.34 -8.10 16 8 C 0.54 9.03 7.73 -86.92 -0.67 8.35 16 9 S -0.63 -14.04 25.05 -107.50 -2.69 -16.74 16 10 N -0.59 -9.71 5.29 -11.28 -0.06 -9.77 16 11 C -0.04 -0.87 5.91 -83.59 -0.49 -1.37 16 12 C -0.04 -0.91 7.77 -39.79 -0.31 -1.22 16 13 C -0.16 -4.32 8.63 -39.26 -0.34 -4.66 16 14 C 0.12 3.17 5.57 -106.79 -0.59 2.57 16 15 C -0.45 -11.71 9.03 -37.86 -0.34 -12.06 16 16 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 17 C 0.07 1.85 5.13 -17.34 -0.09 1.76 16 18 N -0.78 -19.93 10.98 55.54 0.61 -19.32 16 19 Si 0.91 18.52 29.59 -169.99 -5.03 13.49 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 23 C -0.23 -5.38 9.74 -39.26 -0.38 -5.77 16 24 C -0.08 -1.69 9.90 -39.78 -0.39 -2.09 16 25 H 0.13 0.02 8.14 -51.93 -0.42 -0.41 16 26 H 0.13 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.13 0.01 8.14 -51.92 -0.42 -0.41 16 28 H 0.14 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.14 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.10 1.20 7.99 -51.93 -0.41 0.79 16 31 H 0.10 1.19 7.99 -51.93 -0.42 0.77 16 32 H 0.39 2.75 8.49 -40.82 -0.35 2.40 16 33 H 0.39 4.76 8.84 -40.82 -0.36 4.40 16 34 H 0.11 2.68 6.27 -49.91 -0.31 2.37 16 35 H 0.12 3.33 6.19 -52.49 -0.32 3.01 16 36 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 37 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.09 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 349.25 15.07 5.26 5.26 Total: -1.00 -38.25 349.25 -11.95 -50.20 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -4.68 Total: 8.14 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -2.34 Total: -15.86 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.21 Total: -37.20 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -2.09 Total: -21.57 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -3.27 Total: -2.47 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -38.25 -11.95 -50.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729156623.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.295 kcal (2) G-P(sol) polarization free energy of solvation -38.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds