Wall clock time and date at job start Tue Mar 31 2020 15:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42096 * 108.57699 * 2 1 4 4 O 1.42097 * 108.57613 * 228.97696 * 2 1 3 5 5 C 1.81398 * 101.92140 * 114.48963 * 2 1 3 6 6 C 1.52997 * 109.46979 * 180.02562 * 5 2 1 7 7 N 1.46506 * 109.47039 * 179.97438 * 6 5 2 8 8 C 1.34777 * 120.00113 * 180.02562 * 7 6 5 9 9 S 1.71202 * 119.99904 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00188 * 180.02562 * 8 7 6 11 11 C 1.39140 * 119.99868 * 185.52011 * 10 8 7 12 12 C 1.39506 * 119.83808 * 42.14833 * 11 10 8 13 13 C 1.36359 * 120.16809 * 180.29823 * 12 11 10 14 14 C 1.40879 * 119.82778 * 359.44981 * 13 12 11 15 15 C 1.41145 * 120.16162 * 180.25390 * 14 13 12 16 16 H 1.07993 * 120.00091 * 205.11841 * 15 14 13 17 17 C 1.39890 * 119.99636 * 25.11431 * 15 14 13 18 18 N 1.30876 * 120.00177 * 17.73033 * 17 15 14 19 19 Si 1.86802 * 119.99504 * 197.72622 * 17 15 14 20 20 H 1.48499 * 109.47227 * 94.74270 * 19 17 15 21 21 H 1.48504 * 109.46852 * 214.74209 * 19 17 15 22 22 H 1.48502 * 109.47138 * 334.74124 * 19 17 15 23 23 C 1.40882 * 119.67811 * 0.54569 * 14 13 12 24 24 C 1.36352 * 119.82913 * 359.73032 * 23 14 13 25 25 H 1.08994 * 109.46982 * 305.51426 * 1 2 3 26 26 H 1.08996 * 109.46684 * 65.51420 * 1 2 3 27 27 H 1.09001 * 109.46871 * 185.51142 * 1 2 3 28 28 H 1.08992 * 109.47211 * 60.00009 * 5 2 1 29 29 H 1.09002 * 109.46595 * 299.99969 * 5 2 1 30 30 H 1.09006 * 109.47273 * 60.00093 * 6 5 2 31 31 H 1.08993 * 109.47447 * 299.99564 * 6 5 2 32 32 H 0.96998 * 119.99959 * 359.97438 * 7 6 5 33 33 H 0.97003 * 120.00098 * 5.51972 * 10 8 7 34 34 H 1.08000 * 119.91647 * 0.02562 * 12 11 10 35 35 H 1.07997 * 120.08756 * 179.71929 * 13 12 11 36 36 H 0.96995 * 120.00288 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.08122 * 179.71464 * 23 14 13 38 38 H 1.07994 * 119.91994 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7055 -0.8185 1.7984 7 7 4.0082 -1.4121 3.1031 8 6 5.2894 -1.5844 3.4842 9 16 6.5632 -1.1090 2.4439 10 7 5.5678 -2.1310 4.6842 11 6 6.8850 -2.2039 5.1267 12 6 7.7411 -1.1185 4.9396 13 6 9.0349 -1.1849 5.3651 14 6 9.5030 -2.3491 6.0056 15 6 10.8394 -2.4234 6.4537 16 1 11.3197 -3.3845 6.5629 17 6 11.5418 -1.2520 6.7562 18 7 10.8925 -0.1347 6.9633 19 14 13.4064 -1.2828 6.8647 20 1 13.9850 -0.8771 5.5587 21 1 13.8564 -0.3397 7.9199 22 1 13.8600 -2.6560 7.2020 23 6 8.6325 -3.4411 6.1911 24 6 7.3430 -3.3622 5.7551 25 1 -0.3633 0.5969 0.8365 26 1 -0.3632 0.4259 -0.9352 27 1 -0.3633 -1.0229 0.0987 28 1 1.7611 -1.7369 1.6664 29 1 1.7611 -0.1171 2.4042 30 1 4.1328 0.1830 1.7473 31 1 4.1336 -1.4368 1.0095 32 1 3.2864 -1.6804 3.6930 33 1 4.8500 -2.4736 5.2395 34 1 7.3795 -0.2249 4.4525 35 1 9.6978 -0.3455 5.2155 36 1 11.3794 0.6774 7.1735 37 1 8.9858 -4.3385 6.6771 38 1 6.6746 -4.1986 5.8962 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729156623.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:02 Heat of formation + Delta-G solvation = -50.902767 kcal Electronic energy + Delta-G solvation = -22203.220958 eV Core-core repulsion = 18684.283989 eV Total energy + Delta-G solvation = -3518.936969 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.76894 -39.08281 -38.01996 -37.09402 -36.86912 -35.09920 -32.51311 -31.43279 -30.66727 -30.25465 -27.00363 -25.22076 -24.61568 -23.01831 -22.37552 -19.98823 -19.45882 -19.23512 -18.93064 -17.69871 -17.31809 -17.09540 -16.94304 -16.58179 -16.31945 -16.06198 -15.72403 -15.43877 -14.55673 -14.33382 -14.00703 -13.94196 -13.87075 -13.68445 -13.51009 -13.24974 -13.12921 -13.05396 -13.00519 -12.79909 -12.51931 -12.25527 -12.19389 -12.08388 -11.66798 -11.60443 -11.39423 -11.05183 -10.56714 -9.58702 -9.22995 -8.86218 -8.66856 -8.14863 -6.30271 -1.01360 0.14021 0.89281 1.08256 1.25169 1.39285 1.50942 1.53018 1.62034 1.85206 2.20464 2.61247 2.73901 2.81503 3.10821 3.37518 3.76410 3.78073 4.15354 4.27725 4.30388 4.40157 4.51047 4.52425 4.62535 4.77050 5.01606 5.03703 5.11805 5.14809 5.34527 5.41500 5.71182 5.79342 5.99011 6.12110 6.19714 6.35621 6.56588 6.70569 6.92209 7.04123 8.30012 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.030759 B = 0.002271 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.093569 B =12325.155794 C =12798.664603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.624 4.624 2 S 2.423 3.577 3 O -0.987 6.987 4 O -0.986 6.986 5 C -0.620 4.620 6 C 0.128 3.872 7 N -0.655 5.655 8 C 0.570 3.430 9 S -0.745 6.745 10 N -0.575 5.575 11 C -0.024 4.024 12 C -0.044 4.044 13 C -0.191 4.191 14 C 0.089 3.911 15 C -0.487 4.487 16 H 0.082 0.918 17 C 0.032 3.968 18 N -0.816 5.816 19 Si 0.982 3.018 20 H -0.268 1.268 21 H -0.265 1.265 22 H -0.253 1.253 23 C -0.238 4.238 24 C -0.072 4.072 25 H 0.159 0.841 26 H 0.137 0.863 27 H 0.160 0.840 28 H 0.181 0.819 29 H 0.179 0.821 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.424 0.576 33 H 0.420 0.580 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.289 0.711 37 H 0.110 0.890 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.277 -1.978 -4.556 26.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.778 4.778 2 S 2.610 3.390 3 O -0.984 6.984 4 O -0.983 6.983 5 C -0.748 4.748 6 C 0.003 3.997 7 N -0.289 5.289 8 C 0.206 3.794 9 S -0.619 6.619 10 N -0.197 5.197 11 C -0.117 4.117 12 C -0.065 4.065 13 C -0.212 4.212 14 C 0.086 3.914 15 C -0.515 4.515 16 H 0.100 0.900 17 C -0.184 4.184 18 N -0.441 5.441 19 Si 0.803 3.197 20 H -0.194 1.194 21 H -0.190 1.190 22 H -0.176 1.176 23 C -0.259 4.259 24 C -0.093 4.093 25 H 0.177 0.823 26 H 0.156 0.844 27 H 0.178 0.822 28 H 0.199 0.801 29 H 0.197 0.803 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.265 0.735 33 H 0.261 0.739 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.128 0.872 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -24.817 -1.075 -5.904 25.532 hybrid contribution -0.431 -0.355 1.425 1.530 sum -25.248 -1.429 -4.480 25.682 Atomic orbital electron populations 1.30024 1.19517 1.14484 1.13800 1.07437 0.80796 0.74040 0.76771 1.93577 1.81475 1.36619 1.86779 1.93575 1.81460 1.67731 1.55552 1.30637 1.01019 1.18066 1.25104 1.21263 0.93572 1.00464 0.84386 1.44470 1.02944 1.61097 1.20367 1.21698 0.89251 0.82870 0.85536 1.93764 1.41970 1.72984 1.53151 1.41544 1.08832 1.55279 1.14051 1.16795 0.84322 0.96730 1.13887 1.20469 0.94076 0.97003 0.94983 1.20731 0.95512 1.00266 1.04671 1.18054 0.93474 0.91811 0.88013 1.19898 0.97503 0.94441 1.39693 0.89975 1.26832 1.05838 0.94140 0.91548 1.69905 1.40135 1.01655 1.32438 0.85188 0.75882 0.79799 0.78853 1.19353 1.18987 1.17624 1.20726 0.94002 1.00414 1.10715 1.20318 0.95704 0.94658 0.98572 0.82254 0.84418 0.82153 0.80135 0.80339 0.90321 0.90070 0.73457 0.73905 0.88345 0.88925 0.90049 0.87186 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 0.64 10.62 113.37 1.20 1.85 16 2 S 2.42 25.92 5.36 -56.49 -0.30 25.62 16 3 O -0.99 -21.27 18.10 -127.37 -2.30 -23.57 16 4 O -0.99 -20.84 18.10 -127.37 -2.30 -23.14 16 5 C -0.62 -3.02 5.92 71.98 0.43 -2.59 16 6 C 0.13 2.45 5.14 86.38 0.44 2.89 16 7 N -0.66 -12.22 5.56 -350.16 -1.95 -14.17 16 8 C 0.57 18.00 7.73 179.06 1.38 19.39 16 9 S -0.75 -34.32 25.05 -56.49 -1.42 -35.73 16 10 N -0.58 -17.20 5.29 -189.61 -1.00 -18.20 16 11 C -0.02 -0.98 5.91 38.60 0.23 -0.75 16 12 C -0.04 -2.20 7.77 22.14 0.17 -2.03 16 13 C -0.19 -10.70 8.63 22.48 0.19 -10.50 16 14 C 0.09 4.89 5.57 -21.27 -0.12 4.77 16 15 C -0.49 -26.43 9.03 23.38 0.21 -26.22 16 16 H 0.08 4.24 7.90 -2.91 -0.02 4.22 16 17 C 0.03 1.67 5.13 85.24 0.44 2.11 16 18 N -0.82 -43.76 10.98 21.82 0.24 -43.52 16 19 Si 0.98 39.10 29.59 68.60 2.03 41.13 16 20 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 21 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 22 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 23 C -0.24 -11.28 9.74 22.48 0.22 -11.06 16 24 C -0.07 -2.93 9.90 22.14 0.22 -2.71 16 25 H 0.16 -0.97 8.14 -2.39 -0.02 -0.99 16 26 H 0.14 -0.06 8.14 -2.39 -0.02 -0.08 16 27 H 0.16 -1.02 8.14 -2.39 -0.02 -1.03 16 28 H 0.18 -0.55 8.14 -2.39 -0.02 -0.57 16 29 H 0.18 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.08 1.93 7.99 -2.38 -0.02 1.91 16 31 H 0.08 1.94 7.99 -2.39 -0.02 1.92 16 32 H 0.42 3.32 8.49 -92.71 -0.79 2.53 16 33 H 0.42 8.02 8.84 -92.71 -0.82 7.20 16 34 H 0.10 5.10 6.27 -4.55 -0.03 5.07 16 35 H 0.09 5.58 6.19 -2.91 -0.02 5.56 16 36 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 37 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 38 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -94.66 349.25 -2.49 -97.16 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.51 Total: 19.29 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 5.02 Total: -24.85 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -2.71 Total: -75.89 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -4.61 Total: -46.72 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.72 Total: -10.11 kcal Total: -94.66 -2.49 -97.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729156623.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.252 kcal (2) G-P(sol) polarization free energy of solvation -94.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds