Wall clock time and date at job start Tue Mar 31 2020 15:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39742 * 120.20211 * 89.75808 * 3 2 1 5 5 C 1.37895 * 119.90789 * 179.97438 * 4 3 2 6 6 Cl 1.73597 * 119.83921 * 179.97438 * 5 4 3 7 7 C 1.38659 * 120.31724 * 359.97438 * 5 4 3 8 8 C 1.38027 * 120.40970 * 359.72190 * 7 5 4 9 9 C 1.38865 * 120.08318 * 0.55468 * 8 7 5 10 10 N 1.39091 * 120.15670 * 179.71687 * 9 8 7 11 11 C 1.46494 * 120.00009 * 359.73555 * 10 9 8 12 12 C 1.50701 * 109.47135 * 179.97438 * 11 10 9 13 13 C 1.38302 * 119.93101 * 89.99303 * 12 11 10 14 14 C 1.38105 * 120.06695 * 180.02562 * 13 12 11 15 15 C 1.38871 * 119.93200 * 359.97438 * 14 13 12 16 16 O 1.35753 * 120.07178 * 180.02562 * 15 14 13 17 17 C 1.34831 * 116.99766 * 354.46580 * 16 15 14 18 18 H 1.08005 * 119.99910 * 5.05947 * 17 16 15 19 19 C 1.38653 * 120.00325 * 185.05796 * 17 16 15 20 20 N 1.31555 * 119.99726 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00359 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47164 * 89.99653 * 21 19 17 23 23 H 1.48499 * 109.47014 * 210.00195 * 21 19 17 24 24 H 1.48506 * 109.46904 * 329.99621 * 21 19 17 25 25 C 1.38880 * 119.86456 * 0.27348 * 15 14 13 26 26 C 1.38102 * 119.92774 * 359.49328 * 25 15 14 27 27 H 1.08000 * 120.04526 * 359.95157 * 4 3 2 28 28 H 1.08002 * 119.79658 * 180.02562 * 7 5 4 29 29 H 1.08001 * 119.95296 * 180.27858 * 8 7 5 30 30 H 0.97005 * 119.99606 * 179.72473 * 10 9 8 31 31 H 1.08992 * 109.47463 * 59.99244 * 11 10 9 32 32 H 1.09000 * 109.46792 * 299.99125 * 11 10 9 33 33 H 1.08001 * 119.96675 * 0.02562 * 13 12 11 34 34 H 1.07996 * 120.03107 * 179.97438 * 14 13 12 35 35 H 0.97003 * 120.00171 * 179.97438 * 20 19 17 36 36 H 1.08001 * 120.03810 * 179.72208 * 25 15 14 37 37 H 1.07994 * 119.96815 * 180.22560 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2709 -0.0041 -1.2077 5 6 4.6499 -0.0030 -1.2006 6 17 5.5214 -0.0096 -2.7020 7 6 5.3437 0.0035 -0.0001 8 6 4.6626 0.0146 1.2004 9 6 3.2740 0.0077 1.2129 10 7 2.5861 0.0129 2.4219 11 6 3.3266 0.0198 3.6859 12 6 2.3545 0.0251 4.8375 13 6 1.9100 -1.1710 5.3708 14 6 1.0188 -1.1694 6.4258 15 6 0.5694 0.0348 6.9514 16 8 -0.3063 0.0397 7.9888 17 6 -0.7890 -1.1543 8.3878 18 1 -0.4151 -2.0643 7.9421 19 6 -1.7655 -1.2141 9.3704 20 7 -2.2205 -0.1057 9.9137 21 14 -2.4338 -2.8683 9.9238 22 1 -1.6170 -3.3793 11.0537 23 1 -3.8434 -2.7106 10.3635 24 1 -2.3725 -3.8300 8.7938 25 6 1.0136 1.2342 6.4103 26 6 1.9085 1.2261 5.3586 27 1 2.7350 -0.0091 -2.1453 28 1 6.4237 0.0048 -0.0044 29 1 5.2104 0.0241 2.1311 30 1 1.6161 0.0122 2.4279 31 1 3.9528 0.9105 3.7353 32 1 3.9543 -0.8694 3.7440 33 1 2.2602 -2.1072 4.9618 34 1 0.6718 -2.1038 6.8415 35 1 -2.9039 -0.1474 10.6009 36 1 0.6624 2.1724 6.8140 37 1 2.2572 2.1584 4.9397 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729182182.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:59 Heat of formation + Delta-G solvation = 27.514847 kcal Electronic energy + Delta-G solvation = -22908.914219 eV Core-core repulsion = 19255.890035 eV Total energy + Delta-G solvation = -3653.024184 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.04331 -40.64192 -38.68018 -37.70906 -37.26269 -36.15290 -34.34962 -32.49585 -31.99398 -31.80424 -29.49505 -27.59369 -26.14087 -25.00369 -23.68332 -22.89522 -21.96587 -20.11138 -19.87791 -18.92108 -18.20805 -17.40140 -16.54925 -16.38812 -16.28957 -15.95140 -15.60036 -15.55619 -15.27625 -15.16747 -14.87258 -14.46969 -14.39676 -14.15998 -14.06044 -14.00374 -13.78435 -13.53679 -13.15578 -12.98356 -12.59271 -12.51871 -12.36905 -12.28532 -12.20982 -12.14167 -11.72224 -11.24259 -10.84675 -10.80304 -10.03348 -9.84097 -9.05269 -8.52009 -8.44969 -6.20503 -0.14953 0.40592 0.52039 0.55072 1.27286 1.32374 1.41036 1.49636 1.67260 1.92208 2.13719 2.33847 2.84490 2.85324 2.93142 3.15481 3.46377 3.76478 3.86436 4.02174 4.11846 4.15289 4.29930 4.40139 4.48461 4.54295 4.69411 4.79457 4.83627 4.96146 5.02835 5.10798 5.12368 5.24158 5.31066 5.49126 5.61088 5.66631 5.71658 5.97935 6.10617 6.18118 6.43251 6.50965 6.92686 7.72114 8.70821 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.025301 B = 0.002062 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.393331 B =13576.286696 C =13913.049618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.277 3.723 3 C -0.125 4.125 4 C -0.010 4.010 5 C -0.108 4.108 6 Cl -0.073 7.073 7 C -0.017 4.017 8 C -0.182 4.182 9 C 0.273 3.727 10 N -0.729 5.729 11 C 0.180 3.820 12 C -0.187 4.187 13 C -0.047 4.047 14 C -0.249 4.249 15 C 0.120 3.880 16 O -0.231 6.231 17 C -0.414 4.414 18 H 0.103 0.897 19 C -0.023 4.023 20 N -0.918 5.918 21 Si 1.018 2.982 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.254 1.254 25 C -0.211 4.211 26 C -0.045 4.045 27 H 0.145 0.855 28 H 0.164 0.836 29 H 0.167 0.833 30 H 0.395 0.605 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.143 0.857 34 H 0.117 0.883 35 H 0.273 0.727 36 H 0.111 0.889 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.075 -1.392 -21.027 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.037 4.037 3 C -0.134 4.134 4 C -0.031 4.031 5 C -0.137 4.137 6 Cl -0.045 7.045 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.161 3.839 10 N -0.352 5.352 11 C 0.058 3.942 12 C -0.188 4.188 13 C -0.065 4.065 14 C -0.268 4.268 15 C 0.069 3.931 16 O -0.137 6.137 17 C -0.490 4.490 18 H 0.120 0.880 19 C -0.221 4.221 20 N -0.556 5.556 21 Si 0.837 3.163 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.178 1.178 25 C -0.230 4.230 26 C -0.063 4.063 27 H 0.163 0.837 28 H 0.182 0.818 29 H 0.184 0.816 30 H 0.230 0.770 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.161 0.839 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 18.273 -1.139 -20.639 27.589 hybrid contribution -1.064 -0.461 0.586 1.299 sum 17.210 -1.600 -20.052 26.473 Atomic orbital electron populations 1.81341 1.13497 1.12368 1.08023 1.25846 0.92793 0.92048 0.92975 1.15343 0.82981 1.21387 0.93720 1.20793 0.92481 0.93198 0.96651 1.20428 0.91475 1.13815 0.87973 1.98371 1.76150 1.97456 1.32486 1.21307 1.01794 0.91472 0.89147 1.20836 0.90115 1.09384 1.00084 1.17990 0.92371 0.89486 0.84021 1.45270 1.08852 1.77922 1.03187 1.20309 0.91742 1.04175 0.77973 1.19636 1.05029 0.92379 1.01723 1.21028 0.93574 0.98827 0.93100 1.21277 1.05387 0.97178 1.02984 1.20040 0.89994 0.95518 0.87593 1.83945 1.53213 1.33656 1.42859 1.21818 1.21568 0.83606 1.22013 0.88007 1.26605 0.95870 1.03710 0.95899 1.70178 1.29004 1.29713 1.26735 0.84592 0.77698 0.74801 0.79179 1.18526 1.19687 1.17789 1.20500 1.05178 0.95287 1.02042 1.20967 0.93442 0.98910 0.92980 0.83696 0.81809 0.81576 0.77047 0.88478 0.88726 0.83941 0.86498 0.91774 0.87045 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -13.98 18.54 19.00 0.35 -13.62 16 2 C 0.28 6.42 14.09 88.33 1.24 7.67 16 3 C -0.12 -2.09 5.76 -21.16 -0.12 -2.21 16 4 C -0.01 -0.13 9.53 22.55 0.21 0.08 16 5 C -0.11 -1.25 6.31 22.29 0.14 -1.11 16 6 Cl -0.07 -0.87 28.94 -2.72 -0.08 -0.95 16 7 C -0.02 -0.14 9.81 22.32 0.22 0.08 16 8 C -0.18 -1.65 9.29 22.37 0.21 -1.44 16 9 C 0.27 3.95 6.66 38.65 0.26 4.21 16 10 N -0.73 -12.42 5.63 -342.45 -1.93 -14.35 16 11 C 0.18 2.71 5.03 85.63 0.43 3.14 16 12 C -0.19 -4.70 5.25 -19.83 -0.10 -4.81 16 13 C -0.05 -1.41 9.69 22.25 0.22 -1.19 16 14 C -0.25 -10.22 9.17 22.39 0.21 -10.01 16 15 C 0.12 5.73 6.65 22.58 0.15 5.88 16 16 O -0.23 -13.67 9.76 -22.78 -0.22 -13.90 16 17 C -0.41 -23.83 9.49 67.92 0.64 -23.18 16 18 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 19 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 20 N -0.92 -56.09 13.67 21.61 0.30 -55.80 16 21 Si 1.02 42.55 29.55 68.60 2.03 44.58 16 22 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 25 C -0.21 -8.46 9.99 22.39 0.22 -8.23 16 26 C -0.04 -1.30 9.69 22.25 0.22 -1.08 16 27 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 28 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 29 H 0.17 0.75 6.72 -2.91 -0.02 0.73 16 30 H 0.40 8.60 7.32 -92.70 -0.68 7.92 16 31 H 0.10 1.04 7.87 -2.39 -0.02 1.02 16 32 H 0.09 1.05 7.90 -2.39 -0.02 1.04 16 33 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 34 H 0.12 4.97 5.64 -2.91 -0.02 4.96 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -72.85 348.56 5.52 -67.33 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.47 Total: 19.75 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 4.61 Total: -33.04 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -1.28 Total: -83.77 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.22 Total: -13.90 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -72.85 5.52 -67.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729182182.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.847 kcal (2) G-P(sol) polarization free energy of solvation -72.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds