Wall clock time and date at job start Tue Mar 31 2020 15:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48496 * 109.47269 * 270.00079 * 3 2 1 5 5 H 1.48498 * 109.47209 * 30.00693 * 3 2 1 6 6 H 1.48506 * 109.47266 * 150.00131 * 3 2 1 7 7 C 1.38654 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00272 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00013 * 185.05824 * 9 7 2 11 11 C 1.38874 * 120.06890 * 354.46142 * 10 9 7 12 12 C 1.38104 * 119.93265 * 180.29770 * 11 10 9 13 13 C 1.38305 * 120.06272 * 359.47314 * 12 11 10 14 14 C 1.50701 * 119.92910 * 180.25358 * 13 12 11 15 15 N 1.46498 * 109.47235 * 270.25475 * 14 13 12 16 16 N 1.28723 * 125.31873 * 269.69594 * 15 14 13 17 17 N 1.28979 * 108.99403 * 179.88511 * 16 15 14 18 18 C 1.34193 * 107.25337 * 0.36931 * 17 16 15 19 19 C 1.47921 * 126.70493 * 179.77610 * 18 17 16 20 20 C 1.34735 * 125.26571 * 359.71344 * 19 18 17 21 21 C 1.37980 * 114.71280 * 179.83006 * 20 19 18 22 22 C 1.33603 * 115.06153 * 0.46508 * 21 20 19 23 23 S 1.75857 * 109.75176 * 359.74895 * 22 21 20 24 24 N 1.28871 * 125.32060 * 89.99610 * 15 14 13 25 25 C 1.38302 * 120.13938 * 0.50581 * 13 12 11 26 26 C 1.38094 * 120.07047 * 359.77109 * 25 13 12 27 27 H 0.97006 * 119.99724 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.03972 * 0.02808 * 11 10 9 29 29 H 1.07990 * 119.96890 * 179.72053 * 12 11 10 30 30 H 1.09006 * 109.46946 * 30.25429 * 14 13 12 31 31 H 1.08998 * 109.47253 * 150.25176 * 14 13 12 32 32 H 1.08003 * 122.64332 * 0.02900 * 20 19 18 33 33 H 1.08004 * 122.46652 * 180.20923 * 21 20 19 34 34 H 1.07997 * 125.12542 * 179.77011 * 22 21 20 35 35 H 1.08006 * 119.96431 * 179.74134 * 25 13 12 36 36 H 1.08005 * 120.03539 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4472 2.6526 0.7002 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4570 -3.4395 0.0920 12 6 4.2023 -4.5978 0.1940 13 6 3.5685 -5.8205 0.3204 14 6 4.3848 -7.0820 0.4372 15 7 4.6417 -7.6229 -0.8998 16 7 3.8921 -8.4677 -1.5174 17 7 4.4117 -8.7262 -2.6693 18 6 5.5432 -8.0111 -2.7651 19 6 6.4807 -7.9886 -3.9091 20 6 6.3394 -8.6996 -5.0447 21 6 7.3429 -8.5101 -5.9726 22 6 8.3043 -7.6602 -5.6008 23 16 7.9564 -7.0353 -3.9942 24 7 5.6562 -7.3315 -1.6392 25 6 2.1872 -5.8886 0.3346 26 6 1.4365 -4.7345 0.2274 27 1 -0.4850 0.8401 0.0004 28 1 3.9526 -2.4846 -0.0025 29 1 5.2809 -4.5483 0.1790 30 1 5.3325 -6.8574 0.9266 31 1 3.8363 -7.8163 1.0271 32 1 5.5047 -9.3631 -5.2167 33 1 7.3526 -9.0150 -6.9273 34 1 9.1652 -7.3965 -6.1971 35 1 1.6952 -6.8454 0.4293 36 1 0.3578 -4.7884 0.2381 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731156344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:34 Heat of formation + Delta-G solvation = 163.793610 kcal Electronic energy + Delta-G solvation = -23355.583788 eV Core-core repulsion = 19742.805552 eV Total energy + Delta-G solvation = -3612.778236 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.15342 -39.29513 -38.02506 -37.11948 -34.86367 -33.31479 -32.52190 -31.05580 -30.40268 -29.27469 -26.70748 -25.35866 -25.11154 -23.07787 -22.69375 -22.12856 -20.88067 -19.41996 -18.21545 -18.19116 -17.44435 -17.25887 -16.72607 -15.71652 -14.99295 -14.79564 -14.57312 -14.26164 -13.91597 -13.78521 -13.70402 -13.39060 -13.06703 -12.90792 -12.89337 -12.63465 -12.32703 -11.91037 -11.72709 -11.54113 -11.44854 -11.08203 -11.01663 -10.89872 -10.85201 -10.82315 -10.56008 -10.47410 -9.53701 -9.01903 -8.71838 -8.69568 -8.40589 -7.50320 -6.62801 -4.21231 0.39005 1.24840 1.33812 1.61920 1.73914 2.03756 2.12018 2.46022 2.83058 3.04048 3.04508 3.09623 3.70564 3.82937 4.35151 4.36264 4.79698 4.82274 4.85219 4.92298 5.07643 5.15677 5.20228 5.35141 5.43161 5.50030 5.60790 5.78389 5.85370 6.00901 6.03242 6.16553 6.19249 6.25824 6.45214 6.66776 6.83239 6.99095 7.10955 7.23730 7.57536 7.81565 8.41160 8.81898 9.47607 10.54078 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.002725 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.469437 B =10273.398757 C =11540.194146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.395 4.395 8 H 0.095 0.905 9 O -0.166 6.166 10 C 0.168 3.832 11 C -0.240 4.240 12 C -0.035 4.035 13 C -0.240 4.240 14 C 0.184 3.816 15 N -0.115 5.115 16 N -0.057 5.057 17 N -0.277 5.277 18 C 0.223 3.777 19 C -0.112 4.112 20 C -0.093 4.093 21 C -0.137 4.137 22 C -0.213 4.213 23 S 0.168 5.832 24 N -0.296 5.296 25 C -0.041 4.041 26 C -0.197 4.197 27 H 0.273 0.727 28 H 0.131 0.869 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.169 0.831 35 H 0.118 0.882 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.885 -14.201 -5.064 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.471 4.471 8 H 0.113 0.887 9 O -0.067 6.067 10 C 0.112 3.888 11 C -0.259 4.259 12 C -0.054 4.054 13 C -0.243 4.243 14 C 0.067 3.933 15 N -0.028 5.028 16 N -0.050 5.050 17 N -0.149 5.149 18 C -0.058 4.058 19 C -0.232 4.232 20 C -0.128 4.128 21 C -0.167 4.167 22 C -0.350 4.350 23 S 0.432 5.568 24 N -0.147 5.147 25 C -0.060 4.060 26 C -0.216 4.216 27 H 0.083 0.917 28 H 0.149 0.851 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.187 0.813 35 H 0.136 0.864 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.601 -13.100 -3.640 19.951 hybrid contribution 0.106 0.104 -1.234 1.243 sum 14.707 -12.996 -4.873 20.222 Atomic orbital electron populations 1.70035 1.06088 1.28152 1.44500 1.25365 0.95897 0.99077 0.96061 0.85664 0.78976 0.79641 0.78930 1.19667 1.20041 1.18990 1.21414 0.91988 0.80591 1.53062 0.88721 1.83975 1.34690 1.11680 1.76387 1.19479 0.90337 0.88044 0.90949 1.21138 0.93735 0.98980 1.12035 1.20640 0.98595 0.91508 0.94662 1.18978 0.93624 0.92419 1.19320 1.21108 1.02380 0.95277 0.74506 1.50703 1.10868 1.25146 1.16117 1.78863 1.18351 1.06815 1.00925 1.76043 1.07220 1.21824 1.09783 1.22319 0.94545 0.96216 0.92714 1.21197 0.99473 1.07013 0.95533 1.20370 1.00619 1.00205 0.91620 1.20056 0.94434 1.00936 1.01301 1.25946 1.04814 1.04159 1.00114 1.84471 1.15912 1.43418 1.12959 1.74943 1.12268 1.23482 1.04047 1.20544 0.92403 0.97229 0.95799 1.20204 0.99858 0.90134 1.11416 0.91664 0.85130 0.86992 0.86693 0.86364 0.83150 0.83614 0.81320 0.86426 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.26 13.67 55.48 0.76 -23.51 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 19.77 29.55 -169.99 -5.02 14.74 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 7 C -0.39 -10.63 9.49 30.89 0.29 -10.34 16 8 H 0.10 2.35 5.20 -52.49 -0.27 2.07 16 9 O -0.17 -4.57 9.76 0.04 0.00 -4.57 16 10 C 0.17 3.89 6.65 -39.11 -0.26 3.63 16 11 C -0.24 -4.96 9.17 -39.40 -0.36 -5.32 16 12 C -0.04 -0.60 9.69 -39.61 -0.38 -0.99 16 13 C -0.24 -3.78 5.47 -104.57 -0.57 -4.35 16 14 C 0.18 2.24 6.71 -5.19 -0.03 2.21 16 15 N -0.11 -1.72 3.97 -11.67 -0.05 -1.77 16 16 N -0.06 -0.92 13.23 60.35 0.80 -0.13 16 17 N -0.28 -4.57 12.51 32.08 0.40 -4.17 16 18 C 0.22 3.46 8.16 -156.26 -1.28 2.18 16 19 C -0.11 -1.45 6.44 -36.86 -0.24 -1.68 16 20 C -0.09 -1.01 10.07 -40.92 -0.41 -1.42 16 21 C -0.14 -1.16 10.16 -41.30 -0.42 -1.58 16 22 C -0.21 -1.74 11.22 29.11 0.33 -1.41 16 23 S 0.17 1.78 23.32 -107.50 -2.51 -0.72 16 24 N -0.30 -4.63 12.18 32.10 0.39 -4.24 16 25 C -0.04 -0.68 9.69 -39.61 -0.38 -1.07 16 26 C -0.20 -3.97 9.99 -39.40 -0.39 -4.37 16 27 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 29 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.11 1.13 8.09 -51.93 -0.42 0.71 16 31 H 0.12 1.12 8.08 -51.93 -0.42 0.70 16 32 H 0.15 1.52 8.06 -52.48 -0.42 1.09 16 33 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 36 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -31.61 341.59 -7.37 -38.98 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -3.08 Total: 3.73 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -4.21 Total: -23.50 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 2.30 Total: -33.81 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: 0.00 Total: -4.57 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.51 Total: -0.72 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.61 -7.37 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731156344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.774 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds