Wall clock time and date at job start Tue Mar 31 2020 15:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48496 * 109.47269 * 270.00079 * 3 2 1 5 5 H 1.48498 * 109.47209 * 30.00693 * 3 2 1 6 6 H 1.48506 * 109.47266 * 150.00131 * 3 2 1 7 7 C 1.38654 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00272 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00013 * 185.05824 * 9 7 2 11 11 C 1.38874 * 120.06890 * 354.46142 * 10 9 7 12 12 C 1.38104 * 119.93265 * 180.29770 * 11 10 9 13 13 C 1.38305 * 120.06272 * 359.47314 * 12 11 10 14 14 C 1.50701 * 119.92910 * 180.25358 * 13 12 11 15 15 N 1.46498 * 109.47235 * 270.25475 * 14 13 12 16 16 N 1.28723 * 125.31873 * 269.69594 * 15 14 13 17 17 N 1.28979 * 108.99403 * 179.88511 * 16 15 14 18 18 C 1.34193 * 107.25337 * 0.36931 * 17 16 15 19 19 C 1.47921 * 126.70493 * 179.77610 * 18 17 16 20 20 C 1.34735 * 125.26571 * 359.71344 * 19 18 17 21 21 C 1.37980 * 114.71280 * 179.83006 * 20 19 18 22 22 C 1.33603 * 115.06153 * 0.46508 * 21 20 19 23 23 S 1.75857 * 109.75176 * 359.74895 * 22 21 20 24 24 N 1.28871 * 125.32060 * 89.99610 * 15 14 13 25 25 C 1.38302 * 120.13938 * 0.50581 * 13 12 11 26 26 C 1.38094 * 120.07047 * 359.77109 * 25 13 12 27 27 H 0.97006 * 119.99724 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.03972 * 0.02808 * 11 10 9 29 29 H 1.07990 * 119.96890 * 179.72053 * 12 11 10 30 30 H 1.09006 * 109.46946 * 30.25429 * 14 13 12 31 31 H 1.08998 * 109.47253 * 150.25176 * 14 13 12 32 32 H 1.08003 * 122.64332 * 0.02900 * 20 19 18 33 33 H 1.08004 * 122.46652 * 180.20923 * 21 20 19 34 34 H 1.07997 * 125.12542 * 179.77011 * 22 21 20 35 35 H 1.08006 * 119.96431 * 179.74134 * 25 13 12 36 36 H 1.08005 * 120.03539 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4472 2.6526 0.7002 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4570 -3.4395 0.0920 12 6 4.2023 -4.5978 0.1940 13 6 3.5685 -5.8205 0.3204 14 6 4.3848 -7.0820 0.4372 15 7 4.6417 -7.6229 -0.8998 16 7 3.8921 -8.4677 -1.5174 17 7 4.4117 -8.7262 -2.6693 18 6 5.5432 -8.0111 -2.7651 19 6 6.4807 -7.9886 -3.9091 20 6 6.3394 -8.6996 -5.0447 21 6 7.3429 -8.5101 -5.9726 22 6 8.3043 -7.6602 -5.6008 23 16 7.9564 -7.0353 -3.9942 24 7 5.6562 -7.3315 -1.6392 25 6 2.1872 -5.8886 0.3346 26 6 1.4365 -4.7345 0.2274 27 1 -0.4850 0.8401 0.0004 28 1 3.9526 -2.4846 -0.0025 29 1 5.2809 -4.5483 0.1790 30 1 5.3325 -6.8574 0.9266 31 1 3.8363 -7.8163 1.0271 32 1 5.5047 -9.3631 -5.2167 33 1 7.3526 -9.0150 -6.9273 34 1 9.1652 -7.3965 -6.1971 35 1 1.6952 -6.8454 0.4293 36 1 0.3578 -4.7884 0.2381 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731156344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:33 Heat of formation + Delta-G solvation = 144.392571 kcal Electronic energy + Delta-G solvation = -23356.425080 eV Core-core repulsion = 19742.805552 eV Total energy + Delta-G solvation = -3613.619528 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.30851 -40.93994 -38.88763 -38.62056 -36.11286 -34.47198 -34.35355 -32.33076 -31.93535 -30.29987 -28.15853 -27.08576 -26.03705 -24.23297 -23.86552 -23.55160 -22.33981 -20.26030 -19.97452 -19.10863 -18.99675 -18.44231 -18.01082 -16.59064 -16.47232 -16.40645 -16.06557 -15.63448 -15.29810 -15.22837 -14.88046 -14.59983 -14.37518 -14.17118 -13.78363 -13.61564 -13.59339 -13.26169 -13.13457 -12.93448 -12.79078 -12.59104 -12.42988 -12.15701 -12.13238 -12.05189 -11.73135 -11.61535 -11.29495 -10.88430 -9.92586 -9.56392 -9.48265 -9.18249 -8.54693 -6.23721 -0.46697 0.10072 0.32383 0.45812 0.48219 1.00719 1.18171 1.20631 1.32999 1.43204 1.50588 1.94450 2.12785 2.65906 2.76903 3.07774 3.29764 3.37114 3.62965 3.80406 4.03591 4.11579 4.18801 4.27698 4.36098 4.46286 4.47938 4.60271 4.68145 4.73645 4.90205 5.05125 5.09253 5.13458 5.15575 5.30309 5.39961 5.45718 5.54872 5.58742 5.93872 6.03097 6.89477 7.23700 7.65656 8.67783 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.002725 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.469437 B =10273.398757 C =11540.194146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.019 4.019 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.250 1.250 7 C -0.418 4.418 8 H 0.105 0.895 9 O -0.224 6.224 10 C 0.131 3.869 11 C -0.250 4.250 12 C -0.033 4.033 13 C -0.210 4.210 14 C 0.179 3.821 15 N -0.114 5.114 16 N -0.067 5.067 17 N -0.298 5.298 18 C 0.223 3.777 19 C -0.157 4.157 20 C -0.083 4.083 21 C -0.144 4.144 22 C -0.188 4.188 23 S 0.151 5.849 24 N -0.308 5.308 25 C -0.033 4.033 26 C -0.211 4.211 27 H 0.275 0.725 28 H 0.123 0.877 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.178 0.822 34 H 0.204 0.796 35 H 0.155 0.845 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.282 -16.300 -5.788 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.174 1.174 7 C -0.493 4.493 8 H 0.122 0.878 9 O -0.129 6.129 10 C 0.079 3.921 11 C -0.269 4.269 12 C -0.052 4.052 13 C -0.213 4.213 14 C 0.063 3.937 15 N -0.028 5.028 16 N -0.059 5.059 17 N -0.169 5.169 18 C -0.057 4.057 19 C -0.278 4.278 20 C -0.119 4.119 21 C -0.174 4.174 22 C -0.325 4.325 23 S 0.415 5.585 24 N -0.160 5.160 25 C -0.052 4.052 26 C -0.230 4.230 27 H 0.084 0.916 28 H 0.141 0.859 29 H 0.161 0.839 30 H 0.166 0.834 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.195 0.805 34 H 0.221 0.779 35 H 0.172 0.828 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 18.032 -15.264 -4.356 24.023 hybrid contribution -0.729 0.289 -1.090 1.342 sum 17.304 -14.975 -5.446 23.523 Atomic orbital electron populations 1.70175 1.08095 1.29099 1.47966 1.26627 0.96844 1.02832 0.95466 0.84585 0.77948 0.74400 0.79309 1.18878 1.19421 1.17386 1.21868 0.92642 0.81222 1.53593 0.87818 1.83951 1.36154 1.12745 1.80076 1.20044 0.91661 0.88019 0.92330 1.21250 0.93024 1.00194 1.12408 1.21004 1.00074 0.90800 0.93325 1.19427 0.93635 0.93711 1.14526 1.21485 1.04065 0.94186 0.73945 1.50738 1.10644 1.24939 1.16457 1.78799 1.18652 1.07357 1.01140 1.76010 1.08011 1.22794 1.10132 1.22779 0.94413 0.95328 0.93226 1.21378 1.00742 1.09700 0.95934 1.20660 1.00944 0.98971 0.91330 1.20348 0.93652 1.01291 1.02066 1.26393 1.05253 1.02359 0.98503 1.84478 1.15144 1.43675 1.15188 1.74940 1.12653 1.24000 1.04398 1.20976 0.92974 0.97391 0.93825 1.20473 1.00304 0.90444 1.11816 0.91597 0.85938 0.83862 0.83428 0.82680 0.83029 0.80501 0.77940 0.82779 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.40 13.67 21.61 0.30 -55.11 16 2 C -0.02 -1.07 5.49 84.83 0.47 -0.61 16 3 Si 1.02 41.90 29.55 68.60 2.03 43.92 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.42 -23.83 9.49 67.92 0.64 -23.19 16 8 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 9 O -0.22 -13.23 9.76 -22.77 -0.22 -13.45 16 10 C 0.13 6.36 6.65 22.58 0.15 6.51 16 11 C -0.25 -10.46 9.17 22.39 0.21 -10.25 16 12 C -0.03 -1.08 9.69 22.25 0.22 -0.86 16 13 C -0.21 -5.94 5.47 -19.83 -0.11 -6.05 16 14 C 0.18 3.55 6.71 85.63 0.57 4.13 16 15 N -0.11 -3.06 3.97 -190.83 -0.76 -3.82 16 16 N -0.07 -2.02 13.23 37.02 0.49 -1.53 16 17 N -0.30 -9.44 12.51 -52.41 -0.66 -10.09 16 18 C 0.22 6.61 8.16 137.12 1.12 7.73 16 19 C -0.16 -3.85 6.44 24.03 0.15 -3.69 16 20 C -0.08 -1.64 10.07 21.40 0.22 -1.42 16 21 C -0.14 -1.95 10.16 21.16 0.21 -1.74 16 22 C -0.19 -2.38 11.22 66.77 0.75 -1.64 16 23 S 0.15 2.90 23.32 -56.49 -1.32 1.59 16 24 N -0.31 -8.97 12.18 -52.36 -0.64 -9.61 16 25 C -0.03 -1.04 9.69 22.25 0.22 -0.82 16 26 C -0.21 -8.66 9.99 22.39 0.22 -8.44 16 27 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 28 H 0.12 5.24 5.64 -2.91 -0.02 5.23 16 29 H 0.14 3.76 8.06 -2.92 -0.02 3.73 16 30 H 0.15 2.09 8.09 -2.38 -0.02 2.07 16 31 H 0.16 2.05 8.08 -2.39 -0.02 2.03 16 32 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.20 1.15 8.06 -2.91 -0.02 1.12 16 35 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 36 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -75.69 341.59 5.40 -70.29 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 1.14 Total: 18.15 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 5.04 Total: -40.34 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -1.27 Total: -80.16 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.22 Total: -13.45 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.32 Total: 1.59 kcal Total: -75.69 5.40 -70.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731156344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.680 kcal (2) G-P(sol) polarization free energy of solvation -75.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds