Wall clock time and date at job start Tue Mar 31 2020 14:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31227 * 122.23961 * 2 1 4 4 C 1.30166 * 117.18696 * 179.97438 * 3 2 1 5 5 N 1.38218 * 125.36149 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99694 * 179.97438 * 5 4 3 7 7 O 1.21553 * 120.00290 * 359.97438 * 6 5 4 8 8 C 1.48243 * 119.99782 * 179.71988 * 6 5 4 9 9 O 1.20823 * 119.99873 * 0.27675 * 8 6 5 10 10 C 1.50694 * 120.00157 * 180.27280 * 8 6 5 11 11 C 1.53004 * 109.47175 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.47035 * 299.99929 * 10 8 6 13 13 C 1.53001 * 109.46867 * 60.00086 * 10 8 6 14 14 S 1.76141 * 109.27661 * 0.22214 * 4 3 2 15 15 C 1.35033 * 122.23283 * 179.97438 * 2 1 3 16 16 S 1.76201 * 125.94755 * 359.97438 * 15 2 1 17 17 C 1.76203 * 100.00184 * 180.02562 * 16 15 2 18 18 H 1.07993 * 119.99787 * 0.02562 * 17 16 15 19 19 C 1.38908 * 119.99992 * 179.97438 * 17 16 15 20 20 N 1.31476 * 120.00001 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99572 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47310 * 90.00464 * 21 19 17 23 23 H 1.48506 * 109.46707 * 210.00420 * 21 19 17 24 24 H 1.48495 * 109.47419 * 330.00069 * 21 19 17 25 25 H 1.09002 * 109.46973 * 90.02445 * 1 2 3 26 26 H 1.08998 * 109.47486 * 210.02643 * 1 2 3 27 27 H 1.09002 * 109.47146 * 330.02950 * 1 2 3 28 28 H 0.97000 * 119.99823 * 359.97438 * 5 4 3 29 29 H 1.08997 * 109.46991 * 59.99766 * 11 10 8 30 30 H 1.08998 * 109.46959 * 180.02562 * 11 10 8 31 31 H 1.09001 * 109.46361 * 299.99656 * 11 10 8 32 32 H 1.09008 * 109.46866 * 60.00349 * 12 10 8 33 33 H 1.08998 * 109.46846 * 179.97438 * 12 10 8 34 34 H 1.08997 * 109.47361 * 299.99792 * 12 10 8 35 35 H 1.08998 * 109.47077 * 60.00280 * 13 10 8 36 36 H 1.09007 * 109.46685 * 180.02562 * 13 10 8 37 37 H 1.08994 * 109.47050 * 299.99725 * 13 10 8 38 38 H 0.97002 * 120.00266 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2070 1.1099 0.0000 4 6 3.5036 0.9953 0.0005 5 7 4.3997 2.0477 0.0001 6 6 5.7253 1.8040 0.0012 7 8 6.1327 0.6588 0.0031 8 6 6.6864 2.9326 -0.0055 9 8 6.2813 4.0710 -0.0069 10 6 8.1685 2.6602 -0.0104 11 6 8.9308 3.9868 -0.0163 12 6 8.5445 1.8620 1.2396 13 6 8.5349 1.8553 -1.2590 14 16 3.9364 -0.7121 -0.0054 15 6 2.2272 -1.1422 0.0005 16 16 1.5723 -2.7780 0.0019 17 6 3.0695 -3.7071 0.0027 18 1 4.0214 -3.1971 0.0027 19 6 3.0253 -5.0955 0.0044 20 7 1.8664 -5.7163 0.0049 21 14 4.6126 -6.0803 0.0061 22 1 5.0328 -6.3396 1.4065 23 1 4.3941 -7.3724 -0.6925 24 1 5.6726 -5.3119 -0.6946 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8903 0.5134 28 1 4.0745 2.9615 -0.0010 29 1 8.6697 4.5598 0.8734 30 1 10.0028 3.7897 -0.0203 31 1 8.6630 4.5557 -0.9066 32 1 8.0013 0.9169 1.2441 33 1 9.6164 1.6646 1.2357 34 1 8.2835 2.4355 2.1290 35 1 8.2670 2.4240 -2.1494 36 1 9.6069 1.6579 -1.2623 37 1 7.9918 0.9103 -1.2543 38 1 1.8355 -6.6858 0.0058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733919053.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:54 Heat of formation + Delta-G solvation = -39.509616 kcal Electronic energy + Delta-G solvation = -22948.684686 eV Core-core repulsion = 19430.241761 eV Total energy + Delta-G solvation = -3518.442925 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27818 -39.24034 -38.44768 -36.38472 -34.70069 -32.91797 -30.60238 -27.87566 -27.56452 -27.19471 -26.49391 -25.80304 -23.63072 -21.50955 -20.52555 -19.01336 -18.06503 -17.82017 -17.10950 -16.35299 -16.11827 -15.69622 -15.27927 -15.16585 -14.90390 -14.19880 -14.10711 -13.91995 -13.31895 -13.25534 -12.82470 -12.74408 -12.48903 -12.47541 -12.17456 -11.97756 -11.86207 -11.83983 -11.45189 -11.31531 -11.27137 -11.13560 -11.04921 -10.67662 -10.53830 -10.32319 -9.61889 -9.60519 -9.13000 -8.83096 -8.72974 -7.89130 -6.67264 -6.57143 -4.32988 0.52014 1.44760 1.78552 2.33089 2.57319 2.67890 3.01570 3.06035 3.12954 3.28075 3.57945 3.85731 3.93465 4.23803 4.52439 4.54652 4.76530 4.94904 4.96949 5.13876 5.28536 5.36228 5.50316 5.54381 5.60845 5.65968 5.80784 5.90615 5.94479 6.03116 6.11896 6.20142 6.34848 6.39605 6.53087 6.87239 7.07286 7.26323 7.68198 7.97329 8.45537 8.80862 10.38499 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013816 B = 0.003903 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.086848 B = 7171.893002 C = 9001.605220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.020 3.980 3 N -0.466 5.466 4 C 0.169 3.831 5 N -0.586 5.586 6 C 0.462 3.538 7 O -0.473 6.473 8 C 0.373 3.627 9 O -0.415 6.415 10 C -0.091 4.091 11 C -0.136 4.136 12 C -0.147 4.147 13 C -0.147 4.147 14 S 0.208 5.792 15 C -0.250 4.250 16 S 0.160 5.840 17 C -0.562 4.562 18 H 0.090 0.910 19 C 0.085 3.915 20 N -0.858 5.858 21 Si 0.924 3.076 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.264 1.264 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.422 0.578 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.290 13.897 -0.016 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 N -0.187 5.187 4 C -0.201 4.201 5 N -0.236 5.236 6 C 0.244 3.756 7 O -0.347 6.347 8 C 0.242 3.758 9 O -0.284 6.284 10 C -0.093 4.093 11 C -0.193 4.193 12 C -0.204 4.204 13 C -0.204 4.204 14 S 0.452 5.548 15 C -0.487 4.487 16 S 0.412 5.588 17 C -0.711 4.711 18 H 0.108 0.892 19 C -0.127 4.127 20 N -0.491 5.491 21 Si 0.749 3.251 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.188 1.188 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.261 0.739 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.841 12.904 -0.025 16.229 hybrid contribution 1.040 0.395 0.008 1.113 sum 10.882 13.300 -0.017 17.184 Atomic orbital electron populations 1.20129 0.87912 1.02206 1.01886 1.19063 0.96759 0.84478 1.12047 1.65729 1.02760 1.32566 1.17666 1.23604 0.89905 0.92758 1.13859 1.42097 1.04272 1.09061 1.68174 1.20971 0.82786 0.91681 0.80197 1.90762 1.76813 1.21567 1.45557 1.24523 0.92350 0.87529 0.71371 1.90437 1.81548 1.24311 1.32075 1.20950 0.89950 0.98798 0.99581 1.21792 0.99861 0.94632 1.03003 1.21953 1.03010 1.00980 0.94431 1.21951 1.03049 1.00925 0.94447 1.85706 1.01854 0.95080 1.72186 1.28934 1.01219 1.06809 1.11778 1.83076 1.11017 0.84292 1.80447 1.23373 0.93572 0.93971 1.60172 0.89232 1.25079 0.98275 0.96641 0.92730 1.69863 1.24728 1.10493 1.43971 0.86035 0.81227 0.78780 0.79089 1.19542 1.20222 1.18797 0.91789 0.90994 0.91836 0.73940 0.91901 0.91262 0.91910 0.89837 0.90924 0.92410 0.92411 0.90921 0.89841 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.03 36.00 0.36 -0.70 16 2 C 0.02 0.42 6.74 -83.99 -0.57 -0.15 16 3 N -0.47 -9.35 10.54 -9.89 -0.10 -9.45 16 4 C 0.17 3.22 8.37 -87.67 -0.73 2.49 16 5 N -0.59 -9.03 5.36 -12.63 -0.07 -9.10 16 6 C 0.46 6.62 7.48 -12.15 -0.09 6.53 16 7 O -0.47 -7.70 10.85 5.32 0.06 -7.64 16 8 C 0.37 4.35 6.00 -30.20 -0.18 4.17 16 9 O -0.41 -5.15 16.07 5.95 0.10 -5.05 16 10 C -0.09 -0.86 0.76 -155.66 -0.12 -0.97 16 11 C -0.14 -1.05 7.76 37.16 0.29 -0.76 16 12 C -0.15 -1.32 8.29 37.16 0.31 -1.01 16 13 C -0.15 -1.32 8.29 37.16 0.31 -1.01 16 14 S 0.21 4.41 18.32 -107.50 -1.97 2.44 16 15 C -0.25 -5.63 6.69 29.59 0.20 -5.43 16 16 S 0.16 3.92 20.77 -107.50 -2.23 1.69 16 17 C -0.56 -14.88 9.28 30.98 0.29 -14.59 16 18 H 0.09 2.34 5.98 -52.49 -0.31 2.03 16 19 C 0.08 2.20 5.49 -17.46 -0.10 2.11 16 20 N -0.86 -23.06 13.22 55.49 0.73 -22.33 16 21 Si 0.92 20.03 29.55 -169.99 -5.02 15.01 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.23 7.38 -51.93 -0.38 0.84 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.42 5.60 8.27 -40.82 -0.34 5.26 16 29 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.08 0.92 6.41 -51.92 -0.33 0.58 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.92 6.41 -51.93 -0.33 0.59 16 38 H 0.28 6.93 8.31 -40.82 -0.34 6.60 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -29.11 347.15 -7.95 -37.07 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.64 Total: 1.49 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -0.04 Total: -9.34 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.56 Total: -40.89 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.15 Total: -12.69 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 8.33 SS G_CDS: -4.20 Total: 4.13 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.11 -7.95 -37.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733919053.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.444 kcal (2) G-P(sol) polarization free energy of solvation -29.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds