Wall clock time and date at job start Tue Mar 31 2020 14:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31227 * 122.23961 * 2 1 4 4 C 1.30166 * 117.18696 * 179.97438 * 3 2 1 5 5 N 1.38218 * 125.36149 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99694 * 179.97438 * 5 4 3 7 7 O 1.21553 * 120.00290 * 359.97438 * 6 5 4 8 8 C 1.48243 * 119.99782 * 179.71988 * 6 5 4 9 9 O 1.20823 * 119.99873 * 0.27675 * 8 6 5 10 10 C 1.50694 * 120.00157 * 180.27280 * 8 6 5 11 11 C 1.53004 * 109.47175 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.47035 * 299.99929 * 10 8 6 13 13 C 1.53001 * 109.46867 * 60.00086 * 10 8 6 14 14 S 1.76141 * 109.27661 * 0.22214 * 4 3 2 15 15 C 1.35033 * 122.23283 * 179.97438 * 2 1 3 16 16 S 1.76201 * 125.94755 * 359.97438 * 15 2 1 17 17 C 1.76203 * 100.00184 * 180.02562 * 16 15 2 18 18 H 1.07993 * 119.99787 * 0.02562 * 17 16 15 19 19 C 1.38908 * 119.99992 * 179.97438 * 17 16 15 20 20 N 1.31476 * 120.00001 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99572 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47310 * 90.00464 * 21 19 17 23 23 H 1.48506 * 109.46707 * 210.00420 * 21 19 17 24 24 H 1.48495 * 109.47419 * 330.00069 * 21 19 17 25 25 H 1.09002 * 109.46973 * 90.02445 * 1 2 3 26 26 H 1.08998 * 109.47486 * 210.02643 * 1 2 3 27 27 H 1.09002 * 109.47146 * 330.02950 * 1 2 3 28 28 H 0.97000 * 119.99823 * 359.97438 * 5 4 3 29 29 H 1.08997 * 109.46991 * 59.99766 * 11 10 8 30 30 H 1.08998 * 109.46959 * 180.02562 * 11 10 8 31 31 H 1.09001 * 109.46361 * 299.99656 * 11 10 8 32 32 H 1.09008 * 109.46866 * 60.00349 * 12 10 8 33 33 H 1.08998 * 109.46846 * 179.97438 * 12 10 8 34 34 H 1.08997 * 109.47361 * 299.99792 * 12 10 8 35 35 H 1.08998 * 109.47077 * 60.00280 * 13 10 8 36 36 H 1.09007 * 109.46685 * 180.02562 * 13 10 8 37 37 H 1.08994 * 109.47050 * 299.99725 * 13 10 8 38 38 H 0.97002 * 120.00266 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2070 1.1099 0.0000 4 6 3.5036 0.9953 0.0005 5 7 4.3997 2.0477 0.0001 6 6 5.7253 1.8040 0.0012 7 8 6.1327 0.6588 0.0031 8 6 6.6864 2.9326 -0.0055 9 8 6.2813 4.0710 -0.0069 10 6 8.1685 2.6602 -0.0104 11 6 8.9308 3.9868 -0.0163 12 6 8.5445 1.8620 1.2396 13 6 8.5349 1.8553 -1.2590 14 16 3.9364 -0.7121 -0.0054 15 6 2.2272 -1.1422 0.0005 16 16 1.5723 -2.7780 0.0019 17 6 3.0695 -3.7071 0.0027 18 1 4.0214 -3.1971 0.0027 19 6 3.0253 -5.0955 0.0044 20 7 1.8664 -5.7163 0.0049 21 14 4.6126 -6.0803 0.0061 22 1 5.0328 -6.3396 1.4065 23 1 4.3941 -7.3724 -0.6925 24 1 5.6726 -5.3119 -0.6946 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8903 0.5134 28 1 4.0745 2.9615 -0.0010 29 1 8.6697 4.5598 0.8734 30 1 10.0028 3.7897 -0.0203 31 1 8.6630 4.5557 -0.9066 32 1 8.0013 0.9169 1.2441 33 1 9.6164 1.6646 1.2357 34 1 8.2835 2.4355 2.1290 35 1 8.2670 2.4240 -2.1494 36 1 9.6069 1.6579 -1.2623 37 1 7.9918 0.9103 -1.2543 38 1 1.8355 -6.6858 0.0058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733919053.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:53 Heat of formation + Delta-G solvation = -56.687330 kcal Electronic energy + Delta-G solvation = -22949.429568 eV Core-core repulsion = 19430.241761 eV Total energy + Delta-G solvation = -3519.187807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.41177 -40.62191 -39.86108 -37.31089 -35.98212 -34.84841 -32.12069 -28.91230 -28.56230 -28.27591 -27.73071 -27.51848 -24.94087 -22.81015 -21.91332 -20.49532 -19.40966 -19.28211 -18.54186 -17.61106 -17.32602 -17.08336 -17.03352 -16.49390 -16.06477 -15.71800 -15.38273 -14.97256 -14.71709 -14.41782 -14.27320 -13.71446 -13.57398 -13.43164 -13.31450 -13.11112 -13.08449 -13.05903 -12.97058 -12.84438 -12.61995 -12.18594 -12.10321 -12.04109 -11.96598 -11.79323 -11.37191 -10.99374 -10.67263 -10.54570 -10.49044 -9.58130 -8.58438 -8.39829 -6.29605 -0.67895 -0.04918 0.13391 0.75216 1.16684 1.27115 1.35352 1.42735 1.45089 1.56914 2.00159 2.14629 2.70938 2.82145 3.08770 3.33448 3.64528 3.79022 3.82988 4.20132 4.39097 4.55362 4.66697 4.72021 4.83121 4.83724 4.89072 4.92064 4.92288 4.94531 4.99870 5.20577 5.25820 5.29480 5.31483 5.40157 5.49588 5.84457 6.01269 6.41010 6.79754 6.85949 8.49351 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013816 B = 0.003903 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.086848 B = 7171.893002 C = 9001.605220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.036 3.964 3 N -0.478 5.478 4 C 0.205 3.795 5 N -0.586 5.586 6 C 0.463 3.537 7 O -0.485 6.485 8 C 0.383 3.617 9 O -0.417 6.417 10 C -0.087 4.087 11 C -0.132 4.132 12 C -0.146 4.146 13 C -0.146 4.146 14 S 0.184 5.816 15 C -0.279 4.279 16 S 0.109 5.891 17 C -0.582 4.582 18 H 0.084 0.916 19 C 0.039 3.961 20 N -0.892 5.892 21 Si 0.985 3.015 22 H -0.263 1.263 23 H -0.266 1.266 24 H -0.264 1.264 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.435 0.565 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.460 16.103 -0.033 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 N -0.200 5.200 4 C -0.166 4.166 5 N -0.238 5.238 6 C 0.246 3.754 7 O -0.358 6.358 8 C 0.253 3.747 9 O -0.285 6.285 10 C -0.089 4.089 11 C -0.189 4.189 12 C -0.203 4.203 13 C -0.203 4.203 14 S 0.429 5.571 15 C -0.514 4.514 16 S 0.358 5.642 17 C -0.730 4.730 18 H 0.102 0.898 19 C -0.170 4.170 20 N -0.526 5.526 21 Si 0.806 3.194 22 H -0.188 1.188 23 H -0.190 1.190 24 H -0.188 1.188 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.276 0.724 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.032 15.166 -0.042 19.360 hybrid contribution 0.486 0.079 0.012 0.492 sum 12.518 15.246 -0.030 19.726 Atomic orbital electron populations 1.20255 0.85601 1.03193 1.03159 1.19702 0.98440 0.84031 1.08531 1.65930 1.02770 1.31851 1.19463 1.23941 0.90207 0.93026 1.09468 1.42307 1.04257 1.08783 1.68457 1.21818 0.82571 0.92487 0.78524 1.90774 1.76952 1.22748 1.45346 1.24662 0.92727 0.86313 0.71035 1.90451 1.81663 1.24066 1.32353 1.21056 0.87785 1.00106 0.99935 1.21805 1.00922 0.93216 1.02967 1.21965 1.04179 0.99733 0.94431 1.21963 1.04223 0.99669 0.94454 1.85794 1.02012 0.96742 1.72546 1.28786 1.01751 1.06134 1.14769 1.82934 1.11275 0.85943 1.84058 1.23557 0.93831 0.94735 1.60915 0.89845 1.25934 1.01355 0.97395 0.92273 1.69943 1.26495 1.10884 1.45295 0.85137 0.77301 0.77585 0.79393 1.18780 1.19005 1.18803 0.90267 0.91157 0.89625 0.72365 0.91946 0.88978 0.91965 0.92198 0.88663 0.91861 0.91875 0.88658 0.92216 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.10 10.03 71.24 0.71 -1.38 16 2 C 0.04 1.46 6.74 41.91 0.28 1.74 16 3 N -0.48 -18.55 10.54 -185.22 -1.95 -20.51 16 4 C 0.21 7.62 8.37 179.32 1.50 9.13 16 5 N -0.59 -17.08 5.36 -312.15 -1.67 -18.75 16 6 C 0.46 12.59 7.48 86.90 0.65 13.24 16 7 O -0.48 -15.43 10.85 -3.88 -0.04 -15.47 16 8 C 0.38 8.08 6.00 28.35 0.17 8.25 16 9 O -0.42 -9.25 16.07 -1.64 -0.03 -9.27 16 10 C -0.09 -1.40 0.76 -52.93 -0.04 -1.44 16 11 C -0.13 -1.58 7.76 71.98 0.56 -1.02 16 12 C -0.15 -2.27 8.29 71.98 0.60 -1.67 16 13 C -0.15 -2.28 8.29 71.98 0.60 -1.68 16 14 S 0.18 7.89 18.32 -56.49 -1.04 6.85 16 15 C -0.28 -12.77 6.69 67.08 0.45 -12.32 16 16 S 0.11 5.58 20.77 -56.49 -1.17 4.41 16 17 C -0.58 -31.92 9.28 67.98 0.63 -31.28 16 18 H 0.08 4.52 5.98 -2.91 -0.02 4.50 16 19 C 0.04 2.06 5.49 84.91 0.47 2.52 16 20 N -0.89 -49.38 13.22 21.66 0.29 -49.09 16 21 Si 0.98 41.61 29.55 68.60 2.03 43.64 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 23 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 25 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.07 2.40 7.38 -2.39 -0.02 2.38 16 27 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.44 10.58 8.27 -92.71 -0.77 9.81 16 29 H 0.06 0.77 8.10 -2.39 -0.02 0.76 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 32 H 0.06 1.24 6.41 -2.38 -0.02 1.22 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.06 1.24 6.41 -2.39 -0.02 1.22 16 38 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -63.89 347.15 3.33 -60.56 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.34 Total: 13.55 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 6.58 Total: -15.92 kcal Atomic # 7 Polarization: -85.01 SS G_CDS: -3.34 Total: -88.35 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.07 Total: -24.74 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 13.47 SS G_CDS: -2.21 Total: 11.26 kcal Total: -63.89 3.33 -60.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733919053.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.868 kcal (2) G-P(sol) polarization free energy of solvation -63.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds