Wall clock time and date at job start Tue Mar 31 2020 15:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00119 * 2 1 4 4 H 1.48499 * 109.46739 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46984 * 299.99985 * 3 2 1 6 6 H 1.48496 * 109.46985 * 60.00051 * 3 2 1 7 7 C 1.37883 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00279 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99786 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47121 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47471 * 180.02562 * 10 9 7 12 12 S 1.81395 * 109.47536 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54379 * 68.37472 * 12 11 10 14 14 O 1.42097 * 110.54174 * 291.62225 * 12 11 10 15 15 O 1.52198 * 104.45301 * 179.97438 * 12 11 10 16 16 C 1.35902 * 114.00111 * 74.99941 * 15 12 11 17 17 C 1.38749 * 120.05350 * 270.02621 * 16 15 12 18 18 C 1.38125 * 119.94264 * 179.97438 * 17 16 15 19 19 C 1.38288 * 120.05606 * 359.73768 * 18 17 16 20 20 C 1.38252 * 120.10909 * 0.51529 * 19 18 17 21 21 C 1.50694 * 119.96938 * 179.76418 * 20 19 18 22 22 C 1.50706 * 109.47327 * 269.72453 * 21 20 19 23 23 O 1.20825 * 119.99859 * 359.97438 * 22 21 20 24 24 O 1.34224 * 120.00295 * 180.02562 * 22 21 20 25 25 C 1.38167 * 120.05395 * 359.49017 * 20 19 18 26 26 H 0.97000 * 119.99539 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47510 * 60.00031 * 9 7 2 28 28 H 1.09005 * 109.47353 * 300.00020 * 9 7 2 29 29 H 1.08999 * 109.46955 * 59.99628 * 10 9 7 30 30 H 1.09005 * 109.46972 * 300.00190 * 10 9 7 31 31 H 1.08999 * 109.47497 * 59.99762 * 11 10 9 32 32 H 1.09005 * 109.47016 * 299.99965 * 11 10 9 33 33 H 1.07997 * 120.03370 * 359.94894 * 17 16 15 34 34 H 1.08001 * 119.97313 * 180.02562 * 18 17 16 35 35 H 1.07995 * 119.94749 * 180.27758 * 19 18 17 36 36 H 1.08997 * 109.46894 * 149.72652 * 21 20 19 37 37 H 1.09000 * 109.47644 * 29.72801 * 21 20 19 38 38 H 0.96700 * 117.00196 * 179.97438 * 24 22 21 39 39 H 1.08000 * 120.02679 * 180.23228 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 16 2.6589 -6.3659 -0.0019 13 8 3.3558 -6.4270 1.2350 14 8 3.3556 -6.4257 -1.2390 15 8 1.7855 -7.6123 -0.0019 16 6 1.2046 -7.8803 -1.2009 17 6 -0.0420 -7.3513 -1.5029 18 6 -0.6300 -7.6247 -2.7224 19 6 0.0251 -8.4206 -3.6443 20 6 1.2650 -8.9532 -3.3437 21 6 1.9737 -9.8244 -4.3485 22 6 1.5877 -11.2641 -4.1259 23 8 0.8167 -11.5530 -3.2417 24 8 2.1013 -12.2255 -4.9092 25 6 1.8573 -8.6827 -2.1251 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 0.8539 -5.0446 -0.8913 32 1 0.8533 -5.0451 0.8886 33 1 -0.5524 -6.7265 -0.7848 34 1 -1.6002 -7.2128 -2.9581 35 1 -0.4343 -8.6296 -4.5990 36 1 3.0514 -9.7145 -4.2285 37 1 1.6878 -9.5233 -5.3563 38 1 1.8244 -13.1341 -4.7279 39 1 2.8276 -9.0960 -1.8923 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739072044.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:44 Heat of formation + Delta-G solvation = -184.604834 kcal Electronic energy + Delta-G solvation = -25291.405241 eV Core-core repulsion = 21291.624892 eV Total energy + Delta-G solvation = -3999.780348 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31540 -40.56735 -38.45869 -37.05992 -36.49088 -35.97190 -34.76158 -33.35479 -32.23088 -30.74410 -28.66681 -27.84989 -24.05699 -23.72007 -23.26861 -21.73017 -20.68832 -20.06986 -18.52751 -18.20043 -17.60902 -17.39842 -16.85759 -16.68918 -16.52026 -16.14120 -15.46698 -15.38066 -14.52665 -14.50536 -14.18533 -13.83243 -13.62228 -13.46753 -13.10138 -12.68395 -12.63144 -12.34493 -12.30448 -12.09184 -12.07604 -11.93475 -11.88681 -11.83864 -11.41395 -11.27937 -11.01723 -10.95775 -10.87844 -10.42802 -9.99467 -9.46748 -9.29338 -9.19988 -9.07116 -8.43360 -6.08170 -4.11111 0.08337 0.80030 0.99179 1.79752 2.17414 2.59193 3.27925 3.32994 3.35578 3.40404 3.73462 3.97445 4.10746 4.38481 4.40477 4.50351 4.71435 4.76200 4.86697 4.90699 4.98589 5.06281 5.10963 5.16677 5.28521 5.51481 5.73906 5.81522 5.83524 5.96241 6.03698 6.07647 6.21983 6.38496 6.51270 6.82669 7.47070 7.54048 7.63450 7.89871 8.30013 8.95237 9.53764 11.03101 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.020878 B = 0.002650 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.775739 B =10562.150480 C =11083.964897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.103 4.103 11 C -0.631 4.631 12 S 2.581 3.419 13 O -0.932 6.932 14 O -0.956 6.956 15 O -0.669 6.669 16 C 0.074 3.926 17 C -0.122 4.122 18 C -0.098 4.098 19 C -0.087 4.087 20 C -0.070 4.070 21 C -0.073 4.073 22 C 0.478 3.522 23 O -0.505 6.505 24 O -0.518 6.518 25 C -0.075 4.075 26 H 0.261 0.739 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.412 0.588 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.435 -22.722 -10.707 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.142 4.142 11 C -0.761 4.761 12 S 2.680 3.320 13 O -0.930 6.930 14 O -0.954 6.954 15 O -0.628 6.628 16 C 0.033 3.967 17 C -0.142 4.142 18 C -0.116 4.116 19 C -0.106 4.106 20 C -0.070 4.070 21 C -0.110 4.110 22 C 0.319 3.681 23 O -0.392 6.392 24 O -0.330 6.330 25 C -0.095 4.095 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.271 0.729 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.057 -22.795 -10.323 25.024 hybrid contribution -0.285 0.816 0.402 0.953 sum -0.342 -21.979 -9.921 24.117 Atomic orbital electron populations 1.69967 1.06089 1.26691 1.50666 1.25025 0.94896 0.99399 0.95091 0.86494 0.80191 0.83480 0.77625 1.19594 1.20940 1.20934 1.21281 0.93300 0.90824 1.50961 0.92283 1.19077 0.93528 0.90420 0.97797 1.21490 0.99348 0.91209 1.02151 1.30814 1.16830 1.16783 1.11656 1.05873 0.76102 0.75400 0.74607 1.93613 1.69659 1.84743 1.45018 1.93604 1.71682 1.84442 1.45708 1.85751 1.72480 1.63837 1.40706 1.17925 0.94121 1.03040 0.81647 1.21522 0.93616 1.00426 0.98624 1.21037 1.00448 0.97766 0.92301 1.21198 0.93543 0.95898 0.99966 1.19050 0.95344 0.98606 0.94016 1.20272 1.03569 0.86235 1.00971 1.23357 0.77557 0.88643 0.78494 1.90782 1.33177 1.83597 1.31598 1.84520 1.68731 1.20995 1.58781 1.21080 1.00197 0.96164 0.92066 0.92939 0.96052 0.96050 0.91390 0.91378 0.85142 0.84733 0.83614 0.83910 0.84791 0.85917 0.85877 0.72922 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.53 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.75 4.97 -27.88 -0.14 0.61 16 10 C -0.10 -2.06 5.16 -26.73 -0.14 -2.20 16 11 C -0.63 -9.88 5.46 37.15 0.20 -9.67 16 12 S 2.58 41.12 5.17 -107.50 -0.56 40.56 16 13 O -0.93 -17.70 18.09 -67.04 -1.21 -18.91 16 14 O -0.96 -16.35 16.26 -67.03 -1.09 -17.44 16 15 O -0.67 -9.71 10.05 -51.76 -0.52 -10.23 16 16 C 0.07 0.98 4.80 -39.22 -0.19 0.79 16 17 C -0.12 -1.35 8.46 -39.43 -0.33 -1.68 16 18 C -0.10 -0.88 10.04 -39.60 -0.40 -1.28 16 19 C -0.09 -0.74 9.70 -39.56 -0.38 -1.12 16 20 C -0.07 -0.67 4.37 -104.65 -0.46 -1.13 16 21 C -0.07 -0.46 5.94 -29.04 -0.17 -0.64 16 22 C 0.48 3.72 8.32 36.01 0.30 4.02 16 23 O -0.50 -5.84 16.79 -18.75 -0.31 -6.15 16 24 O -0.52 -2.77 13.42 -39.24 -0.53 -3.30 16 25 C -0.07 -0.91 8.70 -39.43 -0.34 -1.25 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.13 1.78 6.60 -51.92 -0.34 1.44 16 32 H 0.13 1.87 8.14 -51.92 -0.42 1.44 16 33 H 0.15 1.35 7.50 -52.49 -0.39 0.95 16 34 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.12 0.61 8.08 -51.93 -0.42 0.19 16 37 H 0.12 0.44 8.08 -51.93 -0.42 0.02 16 38 H 0.41 0.66 9.10 45.56 0.41 1.07 16 39 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -38.00 354.73 -9.70 -47.71 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -4.08 Total: -1.44 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -2.46 Total: -26.97 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.74 Total: -25.57 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -3.66 Total: -56.03 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 41.12 SS G_CDS: -0.56 Total: 40.56 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.00 -9.70 -47.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739072044.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.898 kcal (2) G-P(sol) polarization free energy of solvation -38.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds