Wall clock time and date at job start Tue Mar 31 2020 15:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00119 * 2 1 4 4 H 1.48499 * 109.46739 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46984 * 299.99985 * 3 2 1 6 6 H 1.48496 * 109.46985 * 60.00051 * 3 2 1 7 7 C 1.37883 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00279 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99786 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47121 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47471 * 180.02562 * 10 9 7 12 12 S 1.81395 * 109.47536 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54379 * 68.37472 * 12 11 10 14 14 O 1.42097 * 110.54174 * 291.62225 * 12 11 10 15 15 O 1.52198 * 104.45301 * 179.97438 * 12 11 10 16 16 C 1.35902 * 114.00111 * 74.99941 * 15 12 11 17 17 C 1.38749 * 120.05350 * 270.02621 * 16 15 12 18 18 C 1.38125 * 119.94264 * 179.97438 * 17 16 15 19 19 C 1.38288 * 120.05606 * 359.73768 * 18 17 16 20 20 C 1.38252 * 120.10909 * 0.51529 * 19 18 17 21 21 C 1.50694 * 119.96938 * 179.76418 * 20 19 18 22 22 C 1.50706 * 109.47327 * 269.72453 * 21 20 19 23 23 O 1.20825 * 119.99859 * 359.97438 * 22 21 20 24 24 O 1.34224 * 120.00295 * 180.02562 * 22 21 20 25 25 C 1.38167 * 120.05395 * 359.49017 * 20 19 18 26 26 H 0.97000 * 119.99539 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47510 * 60.00031 * 9 7 2 28 28 H 1.09005 * 109.47353 * 300.00020 * 9 7 2 29 29 H 1.08999 * 109.46955 * 59.99628 * 10 9 7 30 30 H 1.09005 * 109.46972 * 300.00190 * 10 9 7 31 31 H 1.08999 * 109.47497 * 59.99762 * 11 10 9 32 32 H 1.09005 * 109.47016 * 299.99965 * 11 10 9 33 33 H 1.07997 * 120.03370 * 359.94894 * 17 16 15 34 34 H 1.08001 * 119.97313 * 180.02562 * 18 17 16 35 35 H 1.07995 * 119.94749 * 180.27758 * 19 18 17 36 36 H 1.08997 * 109.46894 * 149.72652 * 21 20 19 37 37 H 1.09000 * 109.47644 * 29.72801 * 21 20 19 38 38 H 0.96700 * 117.00196 * 179.97438 * 24 22 21 39 39 H 1.08000 * 120.02679 * 180.23228 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 16 2.6589 -6.3659 -0.0019 13 8 3.3558 -6.4270 1.2350 14 8 3.3556 -6.4257 -1.2390 15 8 1.7855 -7.6123 -0.0019 16 6 1.2046 -7.8803 -1.2009 17 6 -0.0420 -7.3513 -1.5029 18 6 -0.6300 -7.6247 -2.7224 19 6 0.0251 -8.4206 -3.6443 20 6 1.2650 -8.9532 -3.3437 21 6 1.9737 -9.8244 -4.3485 22 6 1.5877 -11.2641 -4.1259 23 8 0.8167 -11.5530 -3.2417 24 8 2.1013 -12.2255 -4.9092 25 6 1.8573 -8.6827 -2.1251 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 0.8539 -5.0446 -0.8913 32 1 0.8533 -5.0451 0.8886 33 1 -0.5524 -6.7265 -0.7848 34 1 -1.6002 -7.2128 -2.9581 35 1 -0.4343 -8.6296 -4.5990 36 1 3.0514 -9.7145 -4.2285 37 1 1.6878 -9.5233 -5.3563 38 1 1.8244 -13.1341 -4.7279 39 1 2.8276 -9.0960 -1.8923 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739072044.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:43 Heat of formation + Delta-G solvation = -211.575101 kcal Electronic energy + Delta-G solvation = -25292.574759 eV Core-core repulsion = 21291.624892 eV Total energy + Delta-G solvation = -4000.949867 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -42.23470 -41.22677 -39.25816 -38.39954 -37.32061 -37.05200 -36.52342 -34.27325 -33.94371 -31.53829 -29.83901 -29.15157 -25.77851 -24.70116 -24.03839 -22.71217 -22.07420 -21.12948 -19.39922 -19.06010 -18.75271 -18.69216 -18.12543 -17.55865 -17.35287 -17.09519 -16.64657 -16.53996 -16.32574 -15.75086 -15.12707 -14.59256 -14.47464 -14.45501 -14.32645 -14.11422 -13.94092 -13.61856 -13.40379 -13.35374 -13.19354 -13.16525 -13.04811 -12.79031 -12.71664 -12.62078 -12.48111 -12.18914 -12.12225 -11.77485 -11.66708 -11.37124 -11.07465 -10.57292 -10.05047 -9.93827 -8.22364 -6.32835 -1.09450 0.00346 0.16214 1.04458 1.23684 1.40257 1.41360 1.54274 2.07071 2.39523 2.48329 2.64759 2.87719 3.11536 3.38739 3.56959 3.69026 3.72482 3.87008 4.02498 4.11792 4.22954 4.34730 4.39044 4.48698 4.58909 4.60579 4.84833 4.88541 4.94953 5.04711 5.05307 5.24275 5.32996 5.45864 5.62761 5.64790 5.77619 5.79733 6.19868 6.82636 7.01635 7.36395 8.89321 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.020878 B = 0.002650 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.775739 B =10562.150480 C =11083.964897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.031 3.969 10 C -0.103 4.103 11 C -0.627 4.627 12 S 2.605 3.395 13 O -0.969 6.969 14 O -0.970 6.970 15 O -0.666 6.666 16 C 0.033 3.967 17 C -0.135 4.135 18 C -0.099 4.099 19 C -0.082 4.082 20 C -0.075 4.075 21 C -0.074 4.074 22 C 0.485 3.515 23 O -0.550 6.550 24 O -0.511 6.511 25 C -0.099 4.099 26 H 0.265 0.735 27 H 0.008 0.992 28 H 0.003 0.997 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.173 0.827 35 H 0.171 0.829 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.428 0.572 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.646 -23.058 -12.710 26.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.588 4.588 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.142 4.142 11 C -0.756 4.756 12 S 2.705 3.295 13 O -0.967 6.967 14 O -0.968 6.968 15 O -0.626 6.626 16 C -0.008 4.008 17 C -0.155 4.155 18 C -0.117 4.117 19 C -0.100 4.100 20 C -0.075 4.075 21 C -0.111 4.111 22 C 0.329 3.671 23 O -0.441 6.441 24 O -0.325 6.325 25 C -0.119 4.119 26 H 0.074 0.926 27 H 0.026 0.974 28 H 0.021 0.979 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.170 0.830 32 H 0.169 0.831 33 H 0.175 0.825 34 H 0.190 0.810 35 H 0.188 0.812 36 H 0.154 0.846 37 H 0.176 0.824 38 H 0.290 0.710 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.238 -23.147 -12.336 26.230 hybrid contribution -0.292 0.780 0.901 1.227 sum -0.531 -22.367 -11.435 25.126 Atomic orbital electron populations 1.70073 1.07571 1.27813 1.51445 1.25918 0.95815 1.03163 0.94630 0.85437 0.79079 0.78918 0.77875 1.18823 1.20137 1.20395 1.21750 0.93747 0.92420 1.50899 0.92142 1.18972 0.93981 0.91613 0.96158 1.21309 0.98679 0.91704 1.02461 1.30722 1.16925 1.14312 1.13688 1.05096 0.75702 0.75281 0.73429 1.93560 1.71060 1.85504 1.46566 1.93565 1.72373 1.84795 1.46111 1.85715 1.72409 1.62657 1.41797 1.18401 0.95499 1.05320 0.81631 1.21823 0.93052 1.00723 0.99903 1.21498 1.01483 0.97290 0.91426 1.21725 0.92851 0.94257 1.01176 1.19443 0.95895 0.98578 0.93599 1.20422 1.04077 0.84830 1.01725 1.23560 0.76491 0.89406 0.77622 1.90775 1.35417 1.84333 1.33529 1.84486 1.68135 1.21964 1.57909 1.21341 1.00650 0.96723 0.93200 0.92637 0.97385 0.97867 0.91452 0.90910 0.83040 0.83051 0.82470 0.80981 0.81177 0.84610 0.82402 0.71027 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.96 13.29 21.45 0.28 -54.68 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.55 -30.88 9.11 25.60 0.23 -30.65 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.57 4.97 29.85 0.15 1.72 16 10 C -0.10 -4.13 5.16 30.59 0.16 -3.97 16 11 C -0.63 -19.43 5.46 71.98 0.39 -19.03 16 12 S 2.61 83.64 5.17 -56.49 -0.29 83.34 16 13 O -0.97 -37.51 18.09 -118.57 -2.15 -39.65 16 14 O -0.97 -33.30 16.26 -118.57 -1.93 -35.23 16 15 O -0.67 -19.59 10.05 -61.54 -0.62 -20.21 16 16 C 0.03 0.86 4.80 22.50 0.11 0.96 16 17 C -0.14 -2.83 8.46 22.37 0.19 -2.64 16 18 C -0.10 -1.55 10.04 22.25 0.22 -1.33 16 19 C -0.08 -1.15 9.70 22.28 0.22 -0.93 16 20 C -0.07 -1.29 4.37 -19.88 -0.09 -1.38 16 21 C -0.07 -0.74 5.94 29.10 0.17 -0.57 16 22 C 0.49 6.64 8.32 71.24 0.59 7.23 16 23 O -0.55 -12.24 16.79 21.97 0.37 -11.87 16 24 O -0.51 -4.30 13.42 -51.35 -0.69 -4.99 16 25 C -0.10 -2.36 8.70 22.37 0.19 -2.16 16 26 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 27 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 29 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 31 H 0.15 4.01 6.60 -2.39 -0.02 4.00 16 32 H 0.15 4.14 8.14 -2.39 -0.02 4.12 16 33 H 0.16 2.74 7.50 -2.91 -0.02 2.72 16 34 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 35 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 36 H 0.14 1.04 8.08 -2.39 -0.02 1.02 16 37 H 0.16 0.47 8.08 -2.39 -0.02 0.45 16 38 H 0.43 0.53 9.10 -74.06 -0.67 -0.15 16 39 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -83.02 354.73 0.42 -82.60 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.41 Total: 7.03 kcal Atomic # 6 Polarization: -55.12 SS G_CDS: 3.00 Total: -52.12 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.28 Total: -54.68 kcal Atomic # 8 Polarization: -106.94 SS G_CDS: -5.01 Total: -111.95 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 83.64 SS G_CDS: -0.29 Total: 83.34 kcal Total: -83.02 0.42 -82.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739072044.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.979 kcal (2) G-P(sol) polarization free energy of solvation -83.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds