Wall clock time and date at job start Tue Mar 31 2020 15:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31264 * 1 3 3 Si 1.86800 * 119.99923 * 2 1 4 4 H 1.48498 * 109.47401 * 274.78331 * 3 2 1 5 5 H 1.48505 * 109.47007 * 34.78743 * 3 2 1 6 6 H 1.48505 * 109.46833 * 154.78162 * 3 2 1 7 7 C 1.39066 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00122 * 160.41271 * 7 2 1 9 9 N 1.37109 * 120.00277 * 340.40747 * 7 2 1 10 10 C 1.35342 * 119.71137 * 318.81062 * 9 7 2 11 11 O 1.21717 * 121.28813 * 0.04446 * 10 9 7 12 12 C 1.46961 * 117.42224 * 180.02562 * 10 9 7 13 13 C 1.39371 * 121.91633 * 179.97438 * 12 10 9 14 14 C 1.37789 * 119.51880 * 180.02562 * 13 12 10 15 15 C 1.38870 * 120.57859 * 0.02562 * 14 13 12 16 16 C 1.37717 * 120.82179 * 359.95704 * 15 14 13 17 17 C 1.39631 * 119.68971 * 0.03762 * 16 15 14 18 18 N 1.35635 * 121.61285 * 179.97438 * 17 16 15 19 19 C 1.29828 * 121.62643 * 180.02562 * 18 17 16 20 20 C 1.50700 * 118.35087 * 180.02562 * 19 18 17 21 21 S 1.81003 * 109.47075 * 359.97438 * 20 19 18 22 22 C 1.76195 * 100.00191 * 179.97438 * 21 20 19 23 23 N 1.31276 * 125.80029 * 0.02630 * 22 21 20 24 24 C 1.34367 * 109.30571 * 179.97438 * 23 22 21 25 25 C 1.34393 * 108.34131 * 0.02562 * 24 23 22 26 26 N 1.36114 * 125.80735 * 179.71924 * 22 21 20 27 27 H 0.97001 * 126.49468 * 0.02562 * 26 22 21 28 28 H 0.97002 * 119.99647 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.24056 * 0.04988 * 13 12 10 30 30 H 1.08005 * 119.71421 * 180.02562 * 14 13 12 31 31 H 1.08002 * 119.59363 * 179.97438 * 15 14 13 32 32 H 1.08001 * 120.15214 * 180.02562 * 16 15 14 33 33 H 1.09002 * 109.47090 * 119.99770 * 20 19 18 34 34 H 1.09004 * 109.47374 * 240.00317 * 20 19 18 35 35 H 1.07994 * 125.82549 * 180.02562 * 24 23 22 36 36 H 1.07998 * 126.51419 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 2.3930 2.1049 -1.3952 5 1 1.4983 2.6214 0.7988 6 1 3.5911 1.4131 0.5966 7 6 2.0080 -1.2044 -0.0005 8 1 3.0411 -1.2313 -0.3141 9 7 1.3820 -2.3576 0.3971 10 6 0.5566 -2.3373 1.4695 11 8 0.3553 -1.3115 2.0930 12 6 -0.0874 -3.6017 1.8519 13 6 -0.9537 -3.6877 2.9403 14 6 -1.5301 -4.8990 3.2552 15 6 -1.2545 -6.0305 2.4986 16 6 -0.4017 -5.9670 1.4191 17 6 0.1949 -4.7510 1.0797 18 7 1.0411 -4.6442 0.0250 19 6 1.5963 -3.5139 -0.2906 20 6 2.5243 -3.4791 -1.4775 21 16 2.6340 -5.1324 -2.2061 22 6 3.7480 -4.8089 -3.5324 23 7 4.2871 -3.6461 -3.8162 24 6 5.0829 -3.7759 -4.8910 25 6 5.0426 -5.0570 -5.2949 26 7 4.2006 -5.7234 -4.4332 27 1 3.9712 -6.6654 -4.4639 28 1 -0.4850 0.8401 0.0004 29 1 -1.1719 -2.8113 3.5324 30 1 -2.2022 -4.9692 4.0977 31 1 -1.7147 -6.9719 2.7599 32 1 -0.1952 -6.8536 0.8380 33 1 2.1392 -2.7795 -2.2194 34 1 3.5148 -3.1581 -1.1551 35 1 5.6569 -2.9855 -5.3516 36 1 5.5732 -5.4836 -6.1332 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742455402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:35 Heat of formation + Delta-G solvation = 62.720972 kcal Electronic energy + Delta-G solvation = -24526.604755 eV Core-core repulsion = 20909.443681 eV Total energy + Delta-G solvation = -3617.161074 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.57491 -42.27497 -39.26698 -38.29161 -35.62578 -33.80426 -33.45089 -32.40130 -31.86940 -30.44757 -29.04180 -27.68784 -24.84068 -24.01303 -22.93144 -22.66888 -22.10968 -20.58501 -20.05786 -19.65618 -18.56376 -17.56966 -16.91268 -16.67995 -16.48701 -16.08735 -15.97713 -15.65066 -15.41768 -15.05485 -14.94572 -14.80641 -14.57944 -14.35035 -14.00485 -13.96107 -13.66452 -13.26187 -13.01374 -12.67636 -12.54124 -12.52533 -12.21526 -11.63376 -11.34054 -11.07234 -11.05473 -10.89224 -10.74330 -10.31371 -10.23534 -9.93131 -8.86487 -8.59981 -8.29265 -6.52989 -0.18880 0.05928 0.21711 1.02601 1.12350 1.32490 1.37796 1.42564 1.49230 2.01626 2.13034 2.22016 2.47633 2.53824 2.82893 3.03550 3.31507 3.74122 3.86324 4.09538 4.13502 4.15164 4.22649 4.46804 4.47331 4.56808 4.60277 4.66221 4.92463 5.07985 5.12547 5.15903 5.34198 5.49836 5.55424 5.73523 5.76779 5.97207 6.22822 6.37654 6.52999 6.77784 7.00021 7.22746 7.54205 8.40883 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.009639 B = 0.005275 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.249734 B = 5306.519539 C = 8063.963741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.254 1.254 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.402 4.402 8 H 0.121 0.879 9 N -0.362 5.362 10 C 0.497 3.503 11 O -0.545 6.545 12 C -0.235 4.235 13 C -0.066 4.066 14 C -0.146 4.146 15 C -0.069 4.069 16 C -0.124 4.124 17 C 0.140 3.860 18 N -0.552 5.552 19 C 0.360 3.640 20 C -0.028 4.028 21 S 0.073 5.927 22 C 0.151 3.849 23 N -0.528 5.528 24 C -0.056 4.056 25 C -0.022 4.022 26 N -0.545 5.545 27 H 0.437 0.563 28 H 0.278 0.722 29 H 0.112 0.888 30 H 0.160 0.840 31 H 0.175 0.825 32 H 0.154 0.846 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.186 0.814 36 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.135 -14.568 -6.792 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.178 4.178 3 Si 0.812 3.188 4 H -0.178 1.178 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.529 4.529 8 H 0.138 0.862 9 N -0.066 5.066 10 C 0.294 3.706 11 O -0.423 6.423 12 C -0.242 4.242 13 C -0.086 4.086 14 C -0.165 4.165 15 C -0.088 4.088 16 C -0.143 4.143 17 C 0.026 3.974 18 N -0.280 5.280 19 C 0.096 3.904 20 C -0.178 4.178 21 S 0.302 5.698 22 C -0.221 4.221 23 N -0.253 5.253 24 C -0.205 4.205 25 C -0.159 4.159 26 N -0.154 5.154 27 H 0.278 0.722 28 H 0.088 0.912 29 H 0.130 0.870 30 H 0.178 0.822 31 H 0.192 0.808 32 H 0.172 0.828 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.203 0.797 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.231 -14.739 -5.974 16.457 hybrid contribution 0.643 2.320 -0.297 2.425 sum 4.875 -12.420 -6.272 14.743 Atomic orbital electron populations 1.69919 1.08921 1.29994 1.38710 1.26385 0.95589 1.03869 0.91985 0.84983 0.78679 0.75884 0.79208 1.17823 1.20906 1.17824 1.20005 0.97686 0.84556 1.50616 0.86200 1.42312 1.34739 1.08958 1.20596 1.18884 0.82109 0.89164 0.80479 1.90596 1.62685 1.35077 1.53951 1.20932 1.06370 0.93539 1.03335 1.21022 0.94033 0.99241 0.94297 1.21392 1.01738 0.91237 1.02086 1.21607 0.94991 0.99644 0.92597 1.21044 0.98632 0.95276 0.99360 1.19139 0.93873 0.93823 0.90592 1.68138 1.17478 1.21805 1.20574 1.22479 0.93627 0.83232 0.91077 1.22022 1.00984 0.99281 0.95517 1.85706 1.50516 1.09848 1.23777 1.25801 1.06540 0.88544 1.01262 1.70789 1.13670 1.22876 1.17928 1.22855 1.03208 0.97887 0.96524 1.23546 0.99582 0.93357 0.99385 1.43384 1.36578 1.12215 1.23174 0.72199 0.91241 0.86960 0.82245 0.80784 0.82813 0.87258 0.86789 0.79666 0.75790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.18 11.55 21.68 0.25 -49.93 16 2 C 0.03 1.85 4.36 84.98 0.37 2.22 16 3 Si 0.99 43.11 29.59 68.60 2.03 45.14 16 4 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.40 -21.79 8.23 84.07 0.69 -21.10 16 8 H 0.12 5.98 7.07 -2.91 -0.02 5.96 16 9 N -0.36 -19.54 2.68 -460.25 -1.23 -20.77 16 10 C 0.50 28.33 6.93 86.44 0.60 28.93 16 11 O -0.55 -34.26 14.28 -4.40 -0.06 -34.32 16 12 C -0.23 -11.30 5.89 -19.96 -0.12 -11.42 16 13 C -0.07 -2.70 9.68 22.44 0.22 -2.48 16 14 C -0.15 -4.28 10.02 22.31 0.22 -4.06 16 15 C -0.07 -1.78 10.00 22.30 0.22 -1.56 16 16 C -0.12 -3.94 10.03 22.48 0.23 -3.72 16 17 C 0.14 5.96 6.63 39.65 0.26 6.22 16 18 N -0.55 -23.91 8.77 -179.54 -1.58 -25.48 16 19 C 0.36 16.76 7.49 137.94 1.03 17.79 16 20 C -0.03 -1.09 4.32 71.24 0.31 -0.78 16 21 S 0.07 2.31 21.21 -56.49 -1.20 1.11 16 22 C 0.15 4.40 8.26 179.69 1.48 5.89 16 23 N -0.53 -17.33 10.60 -196.46 -2.08 -19.41 16 24 C -0.06 -1.37 11.84 83.43 0.99 -0.38 16 25 C -0.02 -0.38 12.04 82.90 1.00 0.62 16 26 N -0.55 -10.91 6.24 -194.04 -1.21 -12.12 16 27 H 0.44 5.68 8.96 -92.71 -0.83 4.85 16 28 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.11 4.73 7.83 -2.91 -0.02 4.71 16 30 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 31 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.15 4.05 8.06 -2.91 -0.02 4.02 16 33 H 0.11 4.63 8.04 -2.39 -0.02 4.61 16 34 H 0.11 4.46 7.58 -2.39 -0.02 4.44 16 35 H 0.19 3.60 8.06 -2.91 -0.02 3.57 16 36 H 0.23 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -78.98 330.07 2.75 -76.23 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.32 Total: 23.37 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 7.51 Total: 16.18 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -5.85 Total: -127.71 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.06 Total: -34.32 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.20 Total: 1.11 kcal Total: -78.98 2.75 -76.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742455402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.950 kcal (2) G-P(sol) polarization free energy of solvation -78.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds