Wall clock time and date at job start Tue Mar 31 2020 15:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86799 * 120.00058 * 2 1 4 4 H 1.48497 * 109.47540 * 240.00564 * 3 2 1 5 5 H 1.48507 * 109.47227 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47307 * 120.00137 * 3 2 1 7 7 C 1.38986 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99983 * 180.02562 * 7 2 1 9 9 N 1.37310 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.36510 * 126.06948 * 180.32449 * 9 7 2 11 11 C 1.35686 * 107.50487 * 180.12856 * 10 9 7 12 12 N 1.40550 * 126.08267 * 179.84572 * 11 10 9 13 13 C 1.34775 * 119.99797 * 179.71136 * 12 11 10 14 14 O 1.21784 * 120.00430 * 0.02562 * 13 12 11 15 15 C 1.41837 * 119.99665 * 179.97438 * 13 12 11 16 16 S 1.75822 * 125.48085 * 359.69321 * 15 13 12 17 17 C 1.70570 * 91.67696 * 180.26691 * 16 15 13 18 18 C 1.33577 * 111.17458 * 0.02562 * 17 16 15 19 19 C 1.37365 * 125.47961 * 180.02562 * 15 13 12 20 20 N 1.39896 * 123.48552 * 359.75108 * 19 15 13 21 21 C 1.36603 * 125.67230 * 309.69673 * 20 19 15 22 22 C 1.34840 * 108.19507 * 179.82886 * 21 20 19 23 23 C 1.40967 * 107.47294 * 0.42691 * 22 21 20 24 24 C 1.34833 * 107.47536 * 359.73138 * 23 22 21 25 25 C 1.40659 * 107.83435 * 359.58091 * 11 10 9 26 26 N 1.30910 * 108.38700 * 0.26303 * 25 11 10 27 27 H 0.97001 * 120.00085 * 359.97438 * 1 2 3 28 28 H 1.07999 * 126.24458 * 359.97438 * 10 9 7 29 29 H 0.96998 * 119.99539 * 359.71672 * 12 11 10 30 30 H 1.07996 * 124.40978 * 180.02562 * 17 16 15 31 31 H 1.08005 * 122.45199 * 180.02562 * 18 17 16 32 32 H 1.08001 * 125.90196 * 0.02562 * 21 20 19 33 33 H 1.08005 * 126.25912 * 180.17941 * 22 21 20 34 34 H 1.07997 * 126.26100 * 179.71406 * 23 22 21 35 35 H 1.07997 * 125.90367 * 179.97438 * 24 23 22 36 36 H 1.07998 * 125.80928 * 180.22864 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1006 1.6965 -1.2125 5 1 1.2820 2.7465 0.0006 6 1 3.1008 1.6964 1.2125 7 6 2.0079 -1.2037 -0.0005 8 1 3.0879 -1.2037 -0.0001 9 7 1.3214 -2.3928 -0.0005 10 6 1.8751 -3.6405 0.0052 11 6 0.8578 -4.5385 0.0001 12 7 0.9890 -5.9379 0.0002 13 6 -0.1103 -6.7177 0.0006 14 8 -1.2172 -6.2098 0.0003 15 6 0.0221 -8.1298 0.0002 16 16 1.5428 -9.0123 -0.0084 17 6 0.7302 -10.5120 -0.0111 18 6 -0.5948 -10.3429 -0.0065 19 6 -1.0172 -9.0280 0.0001 20 7 -2.3641 -8.6499 0.0053 21 6 -2.9370 -7.7553 0.8640 22 6 -4.2453 -7.6527 0.5541 23 6 -4.4933 -8.5214 -0.5281 24 6 -3.3263 -9.1184 -0.8437 25 6 -0.3513 -3.8197 0.0007 26 7 -0.0714 -2.5409 0.0003 27 1 -0.4850 0.8400 0.0004 28 1 2.9302 -3.8709 0.0102 29 1 1.8706 -6.3423 0.0002 30 1 1.2228 -11.4730 -0.0161 31 1 -1.2851 -11.1735 -0.0069 32 1 -2.4291 -7.2199 1.6525 33 1 -4.9713 -7.0235 1.0476 34 1 -5.4441 -8.6799 -1.0151 35 1 -3.1779 -9.8423 -1.6313 36 1 -1.3419 -4.2497 0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747434384.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:13 Heat of formation + Delta-G solvation = 156.590926 kcal Electronic energy + Delta-G solvation = -24277.425041 eV Core-core repulsion = 20664.334473 eV Total energy + Delta-G solvation = -3613.090568 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42033 -39.94215 -38.78937 -37.51637 -34.29147 -33.22166 -31.88661 -30.42036 -29.71581 -28.54004 -27.55504 -25.28220 -24.48935 -21.97408 -21.24721 -20.82397 -20.14083 -19.55151 -18.90248 -18.52145 -17.49840 -16.95410 -15.71307 -15.44344 -15.13086 -15.00051 -14.88774 -14.23198 -14.13640 -13.74757 -13.45635 -13.27474 -13.20728 -12.92558 -12.69072 -12.44749 -12.08544 -11.81195 -11.69649 -11.49082 -11.33407 -11.25886 -10.98909 -10.57243 -10.22936 -9.42596 -9.39202 -9.20233 -9.05431 -8.83885 -8.14921 -8.07895 -7.81539 -6.73446 -6.57753 -4.24706 0.11939 1.09419 1.49293 1.83538 2.69966 2.93914 3.03541 3.08020 3.12888 3.24293 3.35129 3.52677 3.71803 3.86328 4.41872 4.58259 4.74224 4.84861 5.00204 5.11600 5.16514 5.41323 5.52854 5.60444 5.74850 5.86217 5.93191 6.21175 6.41445 6.51581 6.53769 6.84161 6.91928 7.05511 7.19881 7.21430 7.42853 7.65092 7.82741 8.07492 8.23138 8.56413 8.75371 9.34528 9.64053 10.37955 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018519 B = 0.003158 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.582827 B = 8865.555288 C =10261.131796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.140 5.140 10 C -0.084 4.084 11 C -0.061 4.061 12 N -0.615 5.615 13 C 0.561 3.439 14 O -0.509 6.509 15 C -0.262 4.262 16 S 0.237 5.763 17 C -0.224 4.224 18 C -0.148 4.148 19 C 0.181 3.819 20 N -0.389 5.389 21 C 0.058 3.942 22 C -0.212 4.212 23 C -0.186 4.186 24 C -0.026 4.026 25 C -0.026 4.026 26 N -0.260 5.260 27 H 0.276 0.724 28 H 0.146 0.854 29 H 0.392 0.608 30 H 0.176 0.824 31 H 0.151 0.849 32 H 0.159 0.841 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.549 -19.637 0.306 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.093 4.907 10 C -0.235 4.235 11 C -0.167 4.167 12 N -0.256 5.256 13 C 0.348 3.652 14 O -0.387 6.387 15 C -0.384 4.384 16 S 0.504 5.496 17 C -0.362 4.362 18 C -0.180 4.180 19 C 0.073 3.927 20 N -0.063 5.063 21 C -0.069 4.069 22 C -0.236 4.236 23 C -0.211 4.211 24 C -0.152 4.152 25 C -0.202 4.202 26 N -0.091 5.091 27 H 0.087 0.913 28 H 0.163 0.837 29 H 0.225 0.775 30 H 0.194 0.806 31 H 0.168 0.832 32 H 0.176 0.824 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.174 0.826 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.917 -17.576 0.291 17.819 hybrid contribution -0.116 -0.939 -0.109 0.952 sum 2.802 -18.515 0.182 18.727 Atomic orbital electron populations 1.70206 1.06138 1.28197 1.34846 1.25649 0.95713 1.00291 0.95456 0.85887 0.79152 0.79587 0.79481 1.19139 1.20091 1.19141 1.19846 0.91676 0.80557 1.53457 0.86611 1.44558 1.04102 1.03273 1.38773 1.21239 0.96793 0.85372 1.20122 1.17216 0.94515 0.80706 1.24256 1.42419 1.07428 1.04994 1.70807 1.15499 0.85331 0.83973 0.80387 1.90823 1.24491 1.73402 1.49967 1.23803 0.97442 0.98463 1.18696 1.83100 1.05360 0.94189 1.66960 1.25026 0.98184 1.04404 1.08582 1.19758 0.95952 0.95846 1.06417 1.16951 0.83275 0.91486 1.00959 1.40874 1.03535 1.34841 1.27079 1.21790 0.92991 0.94906 0.97217 1.20843 0.95517 1.05144 1.02099 1.20860 0.97262 1.01856 1.01100 1.21720 0.87901 1.05997 0.99557 1.24142 0.98009 0.90651 1.07412 1.78279 0.90014 1.15034 1.25736 0.91325 0.83683 0.77520 0.80637 0.83151 0.82355 0.84630 0.84757 0.82590 0.80568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.44 11.81 55.49 0.66 -20.78 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.94 18.82 29.55 -169.99 -5.02 13.80 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.32 -8.51 10.25 -14.82 -0.15 -8.67 16 8 H 0.12 2.70 7.83 -52.48 -0.41 2.29 16 9 N -0.14 -3.84 3.74 -11.41 -0.04 -3.88 16 10 C -0.08 -1.98 11.49 -16.38 -0.19 -2.16 16 11 C -0.06 -1.42 6.90 -83.86 -0.58 -2.00 16 12 N -0.61 -11.24 5.45 -12.54 -0.07 -11.30 16 13 C 0.56 10.30 7.53 -14.88 -0.11 10.18 16 14 O -0.51 -10.96 10.02 5.11 0.05 -10.91 16 15 C -0.26 -3.73 6.27 -38.52 -0.24 -3.97 16 16 S 0.24 2.20 22.00 -107.50 -2.37 -0.17 16 17 C -0.22 -1.76 10.90 29.10 0.32 -1.44 16 18 C -0.15 -1.47 9.97 -41.26 -0.41 -1.88 16 19 C 0.18 2.47 5.99 -84.54 -0.51 1.97 16 20 N -0.39 -5.94 2.62 -61.59 -0.16 -6.11 16 21 C 0.06 0.97 8.51 -16.63 -0.14 0.83 16 22 C -0.21 -3.33 10.86 -39.75 -0.43 -3.76 16 23 C -0.19 -2.65 10.86 -39.76 -0.43 -3.08 16 24 C -0.03 -0.36 11.24 -16.63 -0.19 -0.55 16 25 C -0.03 -0.70 10.85 -17.03 -0.18 -0.88 16 26 N -0.26 -7.57 10.40 30.80 0.32 -7.25 16 27 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.15 2.83 8.06 -52.49 -0.42 2.40 16 29 H 0.39 5.68 7.80 -40.82 -0.32 5.36 16 30 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 32 H 0.16 2.70 7.43 -52.49 -0.39 2.31 16 33 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 34 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.18 4.65 5.91 -52.49 -0.31 4.34 16 LS Contribution 329.64 15.07 4.97 4.97 Total: -1.00 -34.01 329.64 -8.11 -42.12 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -3.10 Total: 13.82 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -3.35 Total: -14.32 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.70 Total: -49.32 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.05 Total: -10.91 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.37 Total: -0.17 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.01 -8.11 -42.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747434384.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.716 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds