Wall clock time and date at job start Tue Mar 31 2020 15:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86799 * 120.00058 * 2 1 4 4 H 1.48497 * 109.47540 * 240.00564 * 3 2 1 5 5 H 1.48507 * 109.47227 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47307 * 120.00137 * 3 2 1 7 7 C 1.38986 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99983 * 180.02562 * 7 2 1 9 9 N 1.37310 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.36510 * 126.06948 * 180.32449 * 9 7 2 11 11 C 1.35686 * 107.50487 * 180.12856 * 10 9 7 12 12 N 1.40550 * 126.08267 * 179.84572 * 11 10 9 13 13 C 1.34775 * 119.99797 * 179.71136 * 12 11 10 14 14 O 1.21784 * 120.00430 * 0.02562 * 13 12 11 15 15 C 1.41837 * 119.99665 * 179.97438 * 13 12 11 16 16 S 1.75822 * 125.48085 * 359.69321 * 15 13 12 17 17 C 1.70570 * 91.67696 * 180.26691 * 16 15 13 18 18 C 1.33577 * 111.17458 * 0.02562 * 17 16 15 19 19 C 1.37365 * 125.47961 * 180.02562 * 15 13 12 20 20 N 1.39896 * 123.48552 * 359.75108 * 19 15 13 21 21 C 1.36603 * 125.67230 * 309.69673 * 20 19 15 22 22 C 1.34840 * 108.19507 * 179.82886 * 21 20 19 23 23 C 1.40967 * 107.47294 * 0.42691 * 22 21 20 24 24 C 1.34833 * 107.47536 * 359.73138 * 23 22 21 25 25 C 1.40659 * 107.83435 * 359.58091 * 11 10 9 26 26 N 1.30910 * 108.38700 * 0.26303 * 25 11 10 27 27 H 0.97001 * 120.00085 * 359.97438 * 1 2 3 28 28 H 1.07999 * 126.24458 * 359.97438 * 10 9 7 29 29 H 0.96998 * 119.99539 * 359.71672 * 12 11 10 30 30 H 1.07996 * 124.40978 * 180.02562 * 17 16 15 31 31 H 1.08005 * 122.45199 * 180.02562 * 18 17 16 32 32 H 1.08001 * 125.90196 * 0.02562 * 21 20 19 33 33 H 1.08005 * 126.25912 * 180.17941 * 22 21 20 34 34 H 1.07997 * 126.26100 * 179.71406 * 23 22 21 35 35 H 1.07997 * 125.90367 * 179.97438 * 24 23 22 36 36 H 1.07998 * 125.80928 * 180.22864 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1006 1.6965 -1.2125 5 1 1.2820 2.7465 0.0006 6 1 3.1008 1.6964 1.2125 7 6 2.0079 -1.2037 -0.0005 8 1 3.0879 -1.2037 -0.0001 9 7 1.3214 -2.3928 -0.0005 10 6 1.8751 -3.6405 0.0052 11 6 0.8578 -4.5385 0.0001 12 7 0.9890 -5.9379 0.0002 13 6 -0.1103 -6.7177 0.0006 14 8 -1.2172 -6.2098 0.0003 15 6 0.0221 -8.1298 0.0002 16 16 1.5428 -9.0123 -0.0084 17 6 0.7302 -10.5120 -0.0111 18 6 -0.5948 -10.3429 -0.0065 19 6 -1.0172 -9.0280 0.0001 20 7 -2.3641 -8.6499 0.0053 21 6 -2.9370 -7.7553 0.8640 22 6 -4.2453 -7.6527 0.5541 23 6 -4.4933 -8.5214 -0.5281 24 6 -3.3263 -9.1184 -0.8437 25 6 -0.3513 -3.8197 0.0007 26 7 -0.0714 -2.5409 0.0003 27 1 -0.4850 0.8400 0.0004 28 1 2.9302 -3.8709 0.0102 29 1 1.8706 -6.3423 0.0002 30 1 1.2228 -11.4730 -0.0161 31 1 -1.2851 -11.1735 -0.0069 32 1 -2.4291 -7.2199 1.6525 33 1 -4.9713 -7.0235 1.0476 34 1 -5.4441 -8.6799 -1.0151 35 1 -3.1779 -9.8423 -1.6313 36 1 -1.3419 -4.2497 0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747434384.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:12 Heat of formation + Delta-G solvation = 135.072023 kcal Electronic energy + Delta-G solvation = -24278.358170 eV Core-core repulsion = 20664.334473 eV Total energy + Delta-G solvation = -3614.023697 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.54379 -41.70070 -40.32179 -38.53321 -35.98202 -35.03814 -32.89162 -32.32389 -31.07476 -29.75346 -29.16811 -26.91903 -25.75369 -23.29264 -22.72317 -22.23084 -21.34522 -21.27441 -19.99918 -19.93108 -19.13222 -18.07025 -17.45049 -16.88526 -16.68054 -16.36325 -15.87836 -15.56902 -15.43453 -15.12931 -15.00187 -14.80564 -14.61467 -14.21789 -13.72915 -13.51512 -13.40705 -13.30103 -13.15816 -12.98024 -12.88400 -12.85311 -12.14246 -12.13884 -11.88318 -11.03117 -10.94173 -10.81535 -10.39318 -10.12851 -9.91862 -9.14470 -8.99334 -8.56105 -8.48022 -6.25824 -0.83259 0.23509 0.72072 0.96214 1.26891 1.39336 1.56206 1.56246 1.74416 2.00688 2.00804 2.08977 2.17678 2.26593 2.56404 2.90500 3.08106 3.79763 3.90835 4.03743 4.29737 4.35676 4.40691 4.52923 4.58361 4.67436 4.78034 4.92314 4.98215 4.98624 5.08668 5.25678 5.35036 5.37914 5.40759 5.93261 6.06199 6.26569 6.27794 6.55699 6.59735 6.71262 7.24174 7.43821 7.64994 8.51071 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018519 B = 0.003158 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.582827 B = 8865.555288 C =10261.131796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C -0.006 4.006 3 Si 1.021 2.979 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.252 1.252 7 C -0.355 4.355 8 H 0.143 0.857 9 N -0.165 5.165 10 C -0.080 4.080 11 C -0.045 4.045 12 N -0.612 5.612 13 C 0.563 3.437 14 O -0.550 6.550 15 C -0.320 4.320 16 S 0.305 5.695 17 C -0.187 4.187 18 C -0.163 4.163 19 C 0.175 3.825 20 N -0.395 5.395 21 C 0.032 3.968 22 C -0.228 4.228 23 C -0.201 4.201 24 C -0.022 4.022 25 C -0.054 4.054 26 N -0.309 5.309 27 H 0.277 0.723 28 H 0.190 0.810 29 H 0.412 0.588 30 H 0.223 0.777 31 H 0.173 0.827 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.158 0.842 35 H 0.190 0.810 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.669 -22.663 -0.354 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.218 4.218 3 Si 0.839 3.161 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.176 1.176 7 C -0.486 4.486 8 H 0.160 0.840 9 N 0.066 4.934 10 C -0.231 4.231 11 C -0.151 4.151 12 N -0.257 5.257 13 C 0.353 3.647 14 O -0.430 6.430 15 C -0.442 4.442 16 S 0.572 5.428 17 C -0.326 4.326 18 C -0.194 4.194 19 C 0.066 3.934 20 N -0.070 5.070 21 C -0.096 4.096 22 C -0.252 4.252 23 C -0.225 4.225 24 C -0.147 4.147 25 C -0.229 4.229 26 N -0.141 5.141 27 H 0.086 0.914 28 H 0.207 0.793 29 H 0.248 0.752 30 H 0.240 0.760 31 H 0.190 0.810 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.175 0.825 35 H 0.207 0.793 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.090 -20.668 -0.367 21.549 hybrid contribution -1.053 -0.317 0.098 1.104 sum 5.037 -20.985 -0.269 21.583 Atomic orbital electron populations 1.70401 1.08495 1.29223 1.37069 1.26910 0.96456 1.04407 0.94047 0.84637 0.77530 0.73604 0.80329 1.17645 1.20365 1.17621 1.20626 0.93048 0.80849 1.54071 0.83984 1.44845 1.03614 1.04790 1.40124 1.21972 0.98747 0.84157 1.18178 1.17268 0.93074 0.83063 1.21736 1.42296 1.08818 1.02912 1.71677 1.16108 0.84464 0.85765 0.78413 1.90805 1.26080 1.74895 1.51246 1.23536 1.01027 0.96577 1.23071 1.82869 1.01663 0.93459 1.64802 1.25654 0.97372 1.05710 1.03849 1.19884 0.97298 0.94475 1.07732 1.17523 0.82332 0.93145 1.00353 1.41058 1.04696 1.34407 1.26820 1.21635 0.93531 0.96359 0.98112 1.21113 0.95513 1.05632 1.02918 1.21192 0.98732 1.01726 1.00873 1.22317 0.87358 1.05716 0.99350 1.24114 0.98871 0.90874 1.09071 1.78167 0.92012 1.16427 1.27528 0.91371 0.79345 0.75160 0.76039 0.81004 0.84344 0.84365 0.82480 0.79265 0.81810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.26 11.81 21.66 0.26 -48.00 16 2 C -0.01 -0.34 5.50 84.95 0.47 0.13 16 3 Si 1.02 38.74 29.55 68.60 2.03 40.77 16 4 H -0.25 -8.92 7.11 99.48 0.71 -8.22 16 5 H -0.28 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 7 C -0.35 -18.92 10.25 84.01 0.86 -18.06 16 8 H 0.14 6.49 7.83 -2.91 -0.02 6.47 16 9 N -0.17 -9.29 3.74 -190.00 -0.71 -10.00 16 10 C -0.08 -3.76 11.49 83.37 0.96 -2.80 16 11 C -0.05 -2.14 6.90 37.74 0.26 -1.88 16 12 N -0.61 -22.35 5.45 -311.76 -1.70 -24.05 16 13 C 0.56 21.13 7.53 85.13 0.64 21.77 16 14 O -0.55 -25.25 10.02 -4.62 -0.05 -25.30 16 15 C -0.32 -8.81 6.27 22.95 0.14 -8.67 16 16 S 0.30 4.46 22.00 -56.49 -1.24 3.22 16 17 C -0.19 -1.92 10.90 66.76 0.73 -1.20 16 18 C -0.16 -2.63 9.97 21.18 0.21 -2.41 16 19 C 0.18 4.56 5.99 37.62 0.23 4.79 16 20 N -0.40 -12.14 2.62 -348.76 -0.91 -13.06 16 21 C 0.03 1.12 8.51 83.17 0.71 1.83 16 22 C -0.23 -7.56 10.86 22.16 0.24 -7.32 16 23 C -0.20 -5.71 10.86 22.16 0.24 -5.47 16 24 C -0.02 -0.58 11.24 83.17 0.94 0.35 16 25 C -0.05 -3.05 10.85 85.42 0.93 -2.12 16 26 N -0.31 -19.09 10.40 -56.46 -0.59 -19.67 16 27 H 0.28 14.94 8.31 -92.71 -0.77 14.17 16 28 H 0.19 6.89 8.06 -2.91 -0.02 6.86 16 29 H 0.41 11.25 7.80 -92.71 -0.72 10.53 16 30 H 0.22 0.31 8.06 -2.91 -0.02 0.28 16 31 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 32 H 0.14 5.29 7.43 -2.91 -0.02 5.27 16 33 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 34 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.19 3.60 8.06 -2.91 -0.02 3.57 16 36 H 0.17 9.47 5.91 -2.91 -0.02 9.45 16 Total: -1.00 -82.07 329.64 5.06 -77.01 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: 0.43 Total: 40.13 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 7.55 Total: -21.05 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -3.65 Total: -114.79 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.24 Total: 3.22 kcal Total: -82.07 5.06 -77.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747434384.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.084 kcal (2) G-P(sol) polarization free energy of solvation -82.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds