Wall clock time and date at job start Tue Mar 31 2020 15:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47015 * 269.99850 * 3 2 1 5 5 H 1.48497 * 109.47108 * 29.99665 * 3 2 1 6 6 H 1.48496 * 109.47130 * 150.00236 * 3 2 1 7 7 C 1.37880 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99735 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99943 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.46948 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47235 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54275 * 68.37271 * 11 10 9 13 13 O 1.42101 * 110.54298 * 291.62373 * 11 10 9 14 14 C 1.76193 * 104.44909 * 179.97438 * 11 10 9 15 15 C 1.38378 * 119.85027 * 269.72700 * 14 11 10 16 16 C 1.37946 * 120.14845 * 179.72463 * 15 14 11 17 17 C 1.39621 * 119.84551 * 0.57011 * 16 15 14 18 18 C 1.47733 * 120.14666 * 179.68222 * 17 16 15 19 19 O 1.21466 * 120.00146 * 180.02562 * 18 17 16 20 20 O 1.34714 * 119.99709 * 0.02562 * 18 17 16 21 21 C 1.45203 * 116.99603 * 179.97438 * 20 18 17 22 22 C 1.53001 * 109.46729 * 180.02562 * 21 20 18 23 23 O 1.42899 * 109.47377 * 65.00099 * 22 21 20 24 24 C 1.39627 * 119.70717 * 359.70590 * 17 16 15 25 25 C 1.37944 * 119.84559 * 359.97438 * 24 17 16 26 26 H 0.97002 * 119.99563 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47322 * 59.99852 * 9 7 2 28 28 H 1.09000 * 109.47116 * 299.99484 * 9 7 2 29 29 H 1.09004 * 109.47149 * 59.99839 * 10 9 7 30 30 H 1.09000 * 109.46805 * 299.99691 * 10 9 7 31 31 H 1.08000 * 119.91933 * 359.97438 * 15 14 11 32 32 H 1.07995 * 120.06945 * 180.27279 * 16 15 14 33 33 H 1.09000 * 109.47643 * 299.99935 * 21 20 18 34 34 H 1.08999 * 109.47252 * 60.00528 * 21 20 18 35 35 H 1.09001 * 109.47134 * 184.99975 * 22 21 20 36 36 H 1.09004 * 109.47236 * 304.99972 * 22 21 20 37 37 H 0.96703 * 113.99955 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.07702 * 179.97438 * 24 17 16 39 39 H 1.08003 * 119.92557 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 16 5.8355 -2.6367 -0.0001 12 8 6.3342 -2.1464 1.2369 13 8 6.3341 -2.1463 -1.2371 14 6 6.2750 -4.3429 0.0005 15 6 6.4524 -5.0080 1.2009 16 6 6.7911 -6.3453 1.2086 17 6 6.9664 -7.0246 0.0015 18 6 7.3360 -8.4550 0.0020 19 8 7.4883 -9.0433 -1.0497 20 8 7.5040 -9.1068 1.1689 21 6 7.8662 -10.5109 1.0933 22 6 8.0113 -11.0768 2.5074 23 8 6.7426 -11.0485 3.1644 24 6 6.7915 -6.3460 -1.2062 25 6 6.4464 -5.0104 -1.1994 26 1 -0.4849 0.8401 0.0004 27 1 3.8745 -0.6808 0.8904 28 1 3.8752 -0.6797 -0.8895 29 1 3.6584 -3.1503 -0.8903 30 1 3.6578 -3.1506 0.8897 31 1 6.3215 -4.4799 2.1338 32 1 6.9249 -6.8642 2.1462 33 1 7.0884 -11.0587 0.5612 34 1 8.8120 -10.6140 0.5615 35 1 8.3690 -12.1050 2.4523 36 1 8.7248 -10.4735 3.0688 37 1 6.7596 -11.3938 4.0675 38 1 6.9260 -6.8655 -2.1434 39 1 6.3111 -4.4841 -2.1328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748411206.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:08 Heat of formation + Delta-G solvation = -179.171709 kcal Electronic energy + Delta-G solvation = -24630.690366 eV Core-core repulsion = 20631.145616 eV Total energy + Delta-G solvation = -3999.544750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.97743 -39.13714 -37.62959 -36.82332 -36.46988 -35.66253 -34.00913 -32.19918 -31.53370 -31.40007 -30.42651 -26.11693 -25.33259 -23.33071 -22.87865 -21.57651 -21.11092 -18.92633 -18.58852 -18.20665 -17.84397 -17.31642 -16.80098 -16.60912 -15.95236 -15.47753 -15.23973 -15.07386 -14.82838 -14.62565 -14.33279 -13.86405 -13.77923 -13.69887 -13.44224 -13.01480 -12.87719 -12.78310 -12.04625 -11.94980 -11.79747 -11.76586 -11.49966 -11.29463 -11.25839 -11.17952 -11.09992 -10.79211 -10.60928 -10.47649 -10.17055 -9.84599 -9.59125 -9.36566 -9.35407 -8.68626 -6.18694 -4.20735 -0.05732 0.39143 1.00026 2.01872 2.12960 3.08867 3.25514 3.27169 3.33248 3.36577 3.60716 4.10694 4.14252 4.23917 4.33814 4.36394 4.54224 4.57540 4.59190 4.76194 4.95705 4.99697 5.06013 5.11167 5.14024 5.27229 5.43421 5.49442 5.64324 5.66075 5.79690 5.88531 5.95594 6.19694 6.42079 6.75965 6.88551 7.05953 7.30260 7.50639 8.33196 8.82318 9.40261 10.93478 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.002446 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.892159 B =11442.371754 C =11903.444791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.521 4.521 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.555 4.555 11 S 2.467 3.533 12 O -0.941 6.941 13 O -0.941 6.941 14 C -0.622 4.622 15 C -0.037 4.037 16 C -0.083 4.083 17 C -0.083 4.083 18 C 0.510 3.490 19 O -0.501 6.501 20 O -0.342 6.342 21 C 0.066 3.934 22 C 0.077 3.923 23 O -0.567 6.567 24 C -0.077 4.077 25 C -0.035 4.035 26 H 0.267 0.733 27 H 0.036 0.964 28 H 0.031 0.969 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.384 0.616 38 H 0.147 0.853 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.126 -20.951 4.481 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.560 4.560 8 H 0.097 0.903 9 C -0.048 4.048 10 C -0.688 4.688 11 S 2.649 3.351 12 O -0.938 6.938 13 O -0.938 6.938 14 C -0.706 4.706 15 C -0.056 4.056 16 C -0.102 4.102 17 C -0.085 4.085 18 C 0.354 3.646 19 O -0.390 6.390 20 O -0.258 6.258 21 C -0.008 4.008 22 C -0.001 4.001 23 O -0.373 6.373 24 C -0.096 4.096 25 C -0.054 4.054 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.171 0.829 32 H 0.165 0.835 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.231 0.769 38 H 0.164 0.836 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 17.482 -20.165 3.615 26.932 hybrid contribution 0.191 -0.460 0.417 0.649 sum 17.673 -20.625 4.032 27.458 Atomic orbital electron populations 1.69877 1.06225 1.27317 1.49749 1.24982 0.94824 0.99180 0.94085 0.86926 0.80711 0.83665 0.79164 1.19638 1.20763 1.18531 1.20816 0.87599 0.95013 1.52572 0.90277 1.19488 0.99947 0.87143 0.98237 1.30030 1.17499 1.09658 1.11650 1.06581 0.80045 0.73578 0.74882 1.93542 1.78866 1.77151 1.44260 1.93542 1.78869 1.77151 1.44272 1.31335 1.12863 1.27282 0.99132 1.21049 0.93171 0.93934 0.97428 1.21593 0.96387 0.94418 0.97767 1.19373 1.03684 0.89948 0.95450 1.21196 0.73819 0.87753 0.81819 1.90846 1.46966 1.68525 1.32648 1.86594 1.80114 1.25627 1.33514 1.23185 1.01964 0.78174 0.97432 1.22224 0.86464 0.99458 0.91937 1.86570 1.30701 1.87750 1.32240 1.21385 0.96423 0.94257 0.97485 1.21004 0.93242 0.93634 0.97514 0.92319 0.94613 0.95054 0.85015 0.84973 0.82935 0.83489 0.90111 0.89412 0.91054 0.92163 0.76879 0.83574 0.82824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.96 55.43 0.77 -25.77 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.08 9.66 -34.44 -0.33 -14.41 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.20 4.05 -27.88 -0.11 -0.32 16 10 C -0.55 -9.41 5.92 37.16 0.22 -9.19 16 11 S 2.47 39.17 5.15 -107.50 -0.55 38.62 16 12 O -0.94 -17.01 17.10 -57.54 -0.98 -18.00 16 13 O -0.94 -17.06 17.11 -57.54 -0.98 -18.05 16 14 C -0.62 -8.19 5.66 -39.48 -0.22 -8.42 16 15 C -0.04 -0.44 9.45 -39.64 -0.37 -0.82 16 16 C -0.08 -0.89 9.62 -39.17 -0.38 -1.27 16 17 C -0.08 -0.97 5.87 -104.98 -0.62 -1.59 16 18 C 0.51 6.01 7.90 34.61 0.27 6.29 16 19 O -0.50 -6.78 16.14 -19.24 -0.31 -7.09 16 20 O -0.34 -3.53 9.44 -43.31 -0.41 -3.94 16 21 C 0.07 0.50 5.85 37.16 0.22 0.72 16 22 C 0.08 0.39 7.44 37.16 0.28 0.67 16 23 O -0.57 -3.89 13.63 -38.80 -0.53 -4.42 16 24 C -0.08 -0.88 9.60 -39.17 -0.38 -1.26 16 25 C -0.04 -0.43 9.45 -39.64 -0.37 -0.80 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.04 0.80 7.20 -51.93 -0.37 0.42 16 28 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 29 H 0.13 1.99 8.14 -51.92 -0.42 1.56 16 30 H 0.13 1.99 8.14 -51.92 -0.42 1.56 16 31 H 0.15 1.58 7.55 -52.49 -0.40 1.18 16 32 H 0.15 1.27 7.61 -52.49 -0.40 0.87 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.38 0.79 9.12 45.56 0.42 1.21 16 38 H 0.15 1.47 7.65 -52.49 -0.40 1.07 16 39 H 0.15 1.64 7.56 -52.48 -0.40 1.24 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -36.91 356.10 -8.27 -45.17 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.07 Total: 0.32 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: -1.90 Total: -28.46 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.77 Total: -25.77 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -3.22 Total: -51.50 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Atomic # 16 Polarization: 39.17 SS G_CDS: -0.55 Total: 38.62 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.91 -8.27 -45.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748411206.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.999 kcal (2) G-P(sol) polarization free energy of solvation -36.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds