Wall clock time and date at job start Tue Mar 31 2020 15:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47015 * 269.99850 * 3 2 1 5 5 H 1.48497 * 109.47108 * 29.99665 * 3 2 1 6 6 H 1.48496 * 109.47130 * 150.00236 * 3 2 1 7 7 C 1.37880 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99735 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99943 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.46948 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47235 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54275 * 68.37271 * 11 10 9 13 13 O 1.42101 * 110.54298 * 291.62373 * 11 10 9 14 14 C 1.76193 * 104.44909 * 179.97438 * 11 10 9 15 15 C 1.38378 * 119.85027 * 269.72700 * 14 11 10 16 16 C 1.37946 * 120.14845 * 179.72463 * 15 14 11 17 17 C 1.39621 * 119.84551 * 0.57011 * 16 15 14 18 18 C 1.47733 * 120.14666 * 179.68222 * 17 16 15 19 19 O 1.21466 * 120.00146 * 180.02562 * 18 17 16 20 20 O 1.34714 * 119.99709 * 0.02562 * 18 17 16 21 21 C 1.45203 * 116.99603 * 179.97438 * 20 18 17 22 22 C 1.53001 * 109.46729 * 180.02562 * 21 20 18 23 23 O 1.42899 * 109.47377 * 65.00099 * 22 21 20 24 24 C 1.39627 * 119.70717 * 359.70590 * 17 16 15 25 25 C 1.37944 * 119.84559 * 359.97438 * 24 17 16 26 26 H 0.97002 * 119.99563 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47322 * 59.99852 * 9 7 2 28 28 H 1.09000 * 109.47116 * 299.99484 * 9 7 2 29 29 H 1.09004 * 109.47149 * 59.99839 * 10 9 7 30 30 H 1.09000 * 109.46805 * 299.99691 * 10 9 7 31 31 H 1.08000 * 119.91933 * 359.97438 * 15 14 11 32 32 H 1.07995 * 120.06945 * 180.27279 * 16 15 14 33 33 H 1.09000 * 109.47643 * 299.99935 * 21 20 18 34 34 H 1.08999 * 109.47252 * 60.00528 * 21 20 18 35 35 H 1.09001 * 109.47134 * 184.99975 * 22 21 20 36 36 H 1.09004 * 109.47236 * 304.99972 * 22 21 20 37 37 H 0.96703 * 113.99955 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.07702 * 179.97438 * 24 17 16 39 39 H 1.08003 * 119.92557 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 16 5.8355 -2.6367 -0.0001 12 8 6.3342 -2.1464 1.2369 13 8 6.3341 -2.1463 -1.2371 14 6 6.2750 -4.3429 0.0005 15 6 6.4524 -5.0080 1.2009 16 6 6.7911 -6.3453 1.2086 17 6 6.9664 -7.0246 0.0015 18 6 7.3360 -8.4550 0.0020 19 8 7.4883 -9.0433 -1.0497 20 8 7.5040 -9.1068 1.1689 21 6 7.8662 -10.5109 1.0933 22 6 8.0113 -11.0768 2.5074 23 8 6.7426 -11.0485 3.1644 24 6 6.7915 -6.3460 -1.2062 25 6 6.4464 -5.0104 -1.1994 26 1 -0.4849 0.8401 0.0004 27 1 3.8745 -0.6808 0.8904 28 1 3.8752 -0.6797 -0.8895 29 1 3.6584 -3.1503 -0.8903 30 1 3.6578 -3.1506 0.8897 31 1 6.3215 -4.4799 2.1338 32 1 6.9249 -6.8642 2.1462 33 1 7.0884 -11.0587 0.5612 34 1 8.8120 -10.6140 0.5615 35 1 8.3690 -12.1050 2.4523 36 1 8.7248 -10.4735 3.0688 37 1 6.7596 -11.3938 4.0675 38 1 6.9260 -6.8655 -2.1434 39 1 6.3111 -4.4841 -2.1328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748411206.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:07 Heat of formation + Delta-G solvation = -207.352974 kcal Electronic energy + Delta-G solvation = -24631.912398 eV Core-core repulsion = 20631.145616 eV Total energy + Delta-G solvation = -4000.766782 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.090 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.83327 -40.01638 -38.24625 -38.17704 -37.14753 -37.02423 -35.86695 -33.45559 -33.10180 -32.29890 -30.99101 -27.89986 -26.27647 -24.13050 -23.58167 -23.06875 -22.22729 -20.12729 -19.53641 -19.26409 -18.70980 -18.56603 -17.99329 -17.36215 -17.11772 -16.91747 -16.36206 -16.11538 -15.89866 -15.52370 -15.34826 -15.19989 -14.78920 -14.70276 -14.52303 -14.27062 -13.90940 -13.76050 -13.58789 -13.19360 -13.10396 -13.03505 -12.93184 -12.57850 -12.40253 -12.23906 -12.14618 -11.92351 -11.85942 -11.75310 -11.62503 -11.19796 -11.00038 -10.80733 -10.63666 -10.25200 -8.32806 -6.38653 -1.09797 -0.80341 0.11324 1.10195 1.36472 1.37515 1.38416 1.48132 1.89605 2.32477 2.33336 2.85127 3.01624 3.10227 3.25024 3.37416 3.62021 3.74715 3.90233 3.93425 4.01155 4.09923 4.10290 4.25881 4.40022 4.41933 4.53619 4.61488 4.64532 4.78686 4.82756 4.86720 5.01854 5.12540 5.14392 5.14940 5.50755 5.52592 6.19974 6.44582 6.68261 6.88741 7.25681 8.82621 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.002446 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.892159 B =11442.371754 C =11903.444791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.012 3.988 3 Si 0.925 3.075 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.245 1.245 7 C -0.526 4.526 8 H 0.050 0.950 9 C -0.021 4.021 10 C -0.563 4.563 11 S 2.496 3.504 12 O -0.963 6.963 13 O -0.965 6.965 14 C -0.625 4.625 15 C -0.042 4.042 16 C -0.075 4.075 17 C -0.089 4.089 18 C 0.512 3.488 19 O -0.524 6.524 20 O -0.344 6.344 21 C 0.054 3.946 22 C 0.079 3.921 23 O -0.596 6.596 24 C -0.078 4.078 25 C -0.041 4.041 26 H 0.269 0.731 27 H 0.038 0.962 28 H 0.036 0.964 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.168 0.832 32 H 0.170 0.830 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.402 0.598 38 H 0.158 0.842 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.228 -21.985 5.204 29.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.187 4.187 3 Si 0.748 3.252 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.168 1.168 7 C -0.565 4.565 8 H 0.068 0.932 9 C -0.060 4.060 10 C -0.695 4.695 11 S 2.681 3.319 12 O -0.960 6.960 13 O -0.962 6.962 14 C -0.713 4.713 15 C -0.060 4.060 16 C -0.094 4.094 17 C -0.090 4.090 18 C 0.358 3.642 19 O -0.414 6.414 20 O -0.260 6.260 21 C -0.019 4.019 22 C 0.002 3.998 23 O -0.405 6.405 24 C -0.097 4.097 25 C -0.059 4.059 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.165 0.835 30 H 0.167 0.833 31 H 0.185 0.815 32 H 0.188 0.812 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.253 0.747 38 H 0.176 0.824 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 19.576 -21.172 4.366 29.164 hybrid contribution -0.441 -0.367 0.227 0.616 sum 19.135 -21.539 4.593 29.175 Atomic orbital electron populations 1.70014 1.07984 1.28347 1.51775 1.25890 0.95618 1.03109 0.94059 0.86017 0.80054 0.79281 0.79844 1.18630 1.20266 1.16807 1.21168 0.90246 0.93870 1.51209 0.93157 1.19454 0.97060 0.90964 0.98473 1.30011 1.19476 1.06554 1.13438 1.05343 0.78560 0.74267 0.73712 1.93508 1.78771 1.78604 1.45158 1.93508 1.78796 1.78644 1.45256 1.30814 1.14865 1.25249 1.00353 1.21302 0.92789 0.94439 0.97495 1.21804 0.95199 0.93918 0.98439 1.19564 1.03393 0.90147 0.95917 1.21216 0.73318 0.87782 0.81930 1.90834 1.48128 1.69015 1.33454 1.86590 1.79715 1.27079 1.32649 1.23558 1.02227 0.76588 0.99531 1.22344 0.86053 1.01105 0.90326 1.86508 1.31857 1.88232 1.33921 1.21537 0.96013 0.94003 0.98161 1.21190 0.93082 0.93986 0.97662 0.92200 0.94335 0.94558 0.83477 0.83329 0.81498 0.81232 0.91186 0.88027 0.88104 0.91046 0.74709 0.82416 0.81700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.20 13.96 21.45 0.30 -56.90 16 2 C 0.01 0.66 5.47 84.66 0.46 1.12 16 3 Si 0.93 42.75 27.47 68.60 1.88 44.64 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.24 -10.56 6.54 99.48 0.65 -9.90 16 7 C -0.53 -28.78 9.66 25.60 0.25 -28.53 16 8 H 0.05 2.95 7.99 -2.91 -0.02 2.92 16 9 C -0.02 -0.92 4.05 29.85 0.12 -0.80 16 10 C -0.56 -18.52 5.92 71.99 0.43 -18.09 16 11 S 2.50 75.67 5.15 -56.49 -0.29 75.37 16 12 O -0.96 -33.35 17.10 -127.65 -2.18 -35.54 16 13 O -0.96 -33.74 17.11 -127.65 -2.18 -35.93 16 14 C -0.63 -15.29 5.66 22.33 0.13 -15.17 16 15 C -0.04 -0.89 9.45 22.23 0.21 -0.68 16 16 C -0.07 -1.43 9.62 22.53 0.22 -1.21 16 17 C -0.09 -1.90 5.87 -20.10 -0.12 -2.02 16 18 C 0.51 11.31 7.90 70.33 0.56 11.86 16 19 O -0.52 -13.61 16.14 19.95 0.32 -13.29 16 20 O -0.34 -6.48 9.44 -53.58 -0.51 -6.99 16 21 C 0.05 0.73 5.85 71.98 0.42 1.15 16 22 C 0.08 0.61 7.44 71.98 0.54 1.14 16 23 O -0.60 -7.03 13.63 -145.57 -1.98 -9.02 16 24 C -0.08 -1.66 9.60 22.54 0.22 -1.44 16 25 C -0.04 -0.91 9.45 22.23 0.21 -0.70 16 26 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.04 1.67 7.20 -2.39 -0.02 1.66 16 28 H 0.04 1.56 7.57 -2.39 -0.02 1.54 16 29 H 0.15 4.31 8.14 -2.39 -0.02 4.29 16 30 H 0.15 4.31 8.14 -2.39 -0.02 4.29 16 31 H 0.17 3.03 7.55 -2.91 -0.02 3.01 16 32 H 0.17 2.42 7.61 -2.91 -0.02 2.40 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 37 H 0.40 0.86 9.12 -74.06 -0.68 0.19 16 38 H 0.16 2.93 7.65 -2.91 -0.02 2.90 16 39 H 0.17 3.25 7.56 -2.91 -0.02 3.23 16 Total: -1.00 -79.40 356.10 -0.66 -80.06 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.36 Total: 10.95 kcal Atomic # 6 Polarization: -57.00 SS G_CDS: 3.63 Total: -53.37 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.30 Total: -56.90 kcal Atomic # 8 Polarization: -94.22 SS G_CDS: -6.54 Total: -100.76 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.88 Total: 44.64 kcal Atomic # 16 Polarization: 75.67 SS G_CDS: -0.29 Total: 75.37 kcal Total: -79.40 -0.66 -80.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748411206.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.294 kcal (2) G-P(sol) polarization free energy of solvation -79.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds