Wall clock time and date at job start Tue Mar 31 2020 15:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 119.99853 * 2 1 4 4 N 1.46508 * 109.47193 * 124.99985 * 3 2 1 5 5 S 1.65595 * 119.99876 * 165.00215 * 4 3 2 6 6 O 1.42105 * 106.40149 * 178.54167 * 5 4 3 7 7 O 1.42098 * 106.40317 * 311.46040 * 5 4 3 8 8 C 1.76204 * 107.21987 * 65.00402 * 5 4 3 9 9 C 1.37835 * 119.94023 * 114.72369 * 8 5 4 10 10 C 1.39697 * 119.87322 * 179.79120 * 9 8 5 11 11 C 1.47609 * 120.12470 * 180.22657 * 10 9 8 12 12 O 1.21608 * 120.00281 * 0.25758 * 11 10 9 13 13 N 1.34782 * 119.99946 * 180.25275 * 11 10 9 14 14 C 1.36892 * 119.99797 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00330 * 359.97438 * 14 13 11 16 16 C 1.39032 * 119.99991 * 180.02562 * 14 13 11 17 17 N 1.31368 * 119.99931 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99804 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47289 * 90.00397 * 18 16 14 20 20 H 1.48504 * 109.46879 * 210.00670 * 18 16 14 21 21 H 1.48505 * 109.47216 * 330.00230 * 18 16 14 22 22 C 1.39741 * 119.75113 * 0.48220 * 10 9 8 23 23 C 1.37797 * 119.87124 * 359.74704 * 22 10 9 24 24 C 1.38653 * 119.93127 * 294.99639 * 8 5 4 25 25 F 1.35098 * 119.87938 * 0.02562 * 24 8 5 26 26 H 1.08007 * 119.99540 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00297 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00480 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.47277 * 5.00345 * 3 2 1 30 30 H 1.08993 * 109.47815 * 245.00142 * 3 2 1 31 31 H 0.96997 * 120.00091 * 345.00187 * 4 3 2 32 32 H 1.07996 * 120.06393 * 359.97438 * 9 8 5 33 33 H 0.96996 * 120.00018 * 359.97438 * 13 11 10 34 34 H 0.97005 * 119.99521 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.06008 * 179.72261 * 22 10 9 36 36 H 1.07999 * 119.93264 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 16 4.2064 2.4586 1.1798 6 8 4.9022 2.2471 2.4006 7 8 4.8392 2.4218 -0.0920 8 6 3.4430 4.0414 1.3101 9 6 3.6224 4.8002 2.4467 10 6 3.0201 6.0567 2.5467 11 6 3.2126 6.8761 3.7593 12 8 3.9004 6.4597 4.6717 13 7 2.6262 8.0858 3.8553 14 6 2.8051 8.8459 4.9796 15 1 3.4159 8.4761 5.7899 16 6 2.1998 10.0936 5.0789 17 7 2.3720 10.8233 6.1576 18 14 1.1428 10.7330 3.6776 19 1 -0.2650 10.3092 3.8863 20 1 1.2132 12.2159 3.6413 21 1 1.6400 10.1822 2.3912 22 6 2.2303 6.5326 1.4968 23 6 2.0540 5.7633 0.3672 24 6 2.6583 4.5186 0.2714 25 9 2.4809 3.7681 -0.8379 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4028 -0.9313 31 1 2.8994 0.6898 1.8523 32 1 4.2299 4.4254 3.2571 33 1 2.0779 8.4181 3.1274 34 1 1.9499 11.6939 6.2266 35 1 1.7586 7.5014 1.5707 36 1 1.4435 6.1300 -0.4447 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749603134.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:40 Heat of formation + Delta-G solvation = -95.165713 kcal Electronic energy + Delta-G solvation = -25391.838451 eV Core-core repulsion = 21304.768920 eV Total energy + Delta-G solvation = -4087.069531 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -49.44338 -39.65236 -37.63428 -37.36279 -36.63657 -35.97625 -34.35920 -32.70386 -32.25951 -31.42113 -30.66722 -25.95980 -25.60685 -23.78214 -23.07081 -20.67426 -20.34562 -19.46529 -19.16968 -18.14563 -17.66511 -17.15722 -16.85484 -16.73036 -15.95013 -15.64404 -15.25482 -15.14638 -14.77406 -14.32556 -14.13545 -13.99610 -13.81026 -13.56210 -13.16638 -13.14428 -12.93577 -12.46559 -12.38756 -12.25747 -12.19012 -12.12245 -11.88871 -11.43066 -11.35629 -10.95629 -10.82535 -10.24712 -10.20550 -9.89063 -9.74078 -9.60922 -8.86685 -8.86442 -8.47833 -6.63350 -4.05242 0.14505 0.45536 0.89537 1.79127 2.71001 2.82495 2.88281 2.96665 3.02258 3.49978 3.77734 3.83558 4.03142 4.08825 4.30449 4.40791 4.58032 4.70010 4.87071 5.03648 5.04830 5.10347 5.13333 5.19409 5.42116 5.47943 5.61492 5.66084 5.80307 5.97026 6.17103 6.17646 6.25945 6.56777 6.68950 7.24664 7.85193 8.28054 8.64121 9.09041 9.53830 10.47572 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.003322 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.681106 B = 8427.874344 C = 8987.559034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.167 4.167 3 C 0.140 3.860 4 N -1.112 6.112 5 S 2.700 3.300 6 O -0.947 6.947 7 O -0.947 6.947 8 C -0.714 4.714 9 C 0.048 3.952 10 C -0.118 4.118 11 C 0.468 3.532 12 O -0.572 6.572 13 N -0.563 5.563 14 C -0.297 4.297 15 H 0.128 0.872 16 C 0.044 3.956 17 N -0.856 5.856 18 Si 0.879 3.121 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.268 1.268 22 C -0.035 4.035 23 C -0.165 4.165 24 C 0.178 3.822 25 F -0.126 7.126 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.421 0.579 32 H 0.165 0.835 33 H 0.371 0.629 34 H 0.280 0.720 35 H 0.139 0.861 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.397 -15.845 -15.492 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C 0.014 3.986 4 N -0.873 5.873 5 S 2.788 3.212 6 O -0.937 6.937 7 O -0.937 6.937 8 C -0.800 4.800 9 C 0.027 3.973 10 C -0.123 4.123 11 C 0.257 3.743 12 O -0.457 6.457 13 N -0.199 5.199 14 C -0.425 4.425 15 H 0.145 0.855 16 C -0.162 4.162 17 N -0.494 5.494 18 Si 0.704 3.296 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.193 1.193 22 C -0.055 4.055 23 C -0.185 4.185 24 C 0.156 3.844 25 F -0.105 7.105 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.135 0.865 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.256 0.744 32 H 0.183 0.817 33 H 0.206 0.794 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.079 -15.884 -14.940 22.390 hybrid contribution -1.675 0.944 -0.901 2.123 sum -6.753 -14.940 -15.841 22.798 Atomic orbital electron populations 1.23990 0.95788 1.02452 0.98604 1.22972 0.96049 0.98030 1.01563 1.20655 0.92130 0.96646 0.89149 1.55526 1.50442 1.49113 1.32223 1.01830 0.72725 0.72793 0.73884 1.93630 1.69615 1.84776 1.45670 1.93612 1.71649 1.86133 1.42329 1.30834 1.19748 1.26812 1.02596 1.20952 0.91536 0.91024 0.93793 1.20552 0.99418 0.96078 0.96240 1.17315 0.86645 0.82958 0.87374 1.90691 1.42877 1.71878 1.40249 1.42232 1.43788 1.15917 1.17960 1.19618 1.29546 0.97886 0.95482 0.85486 1.25164 0.97719 0.95985 0.97350 1.69596 1.41464 1.11846 1.26446 0.86670 0.81263 0.80167 0.81458 1.19008 1.19471 1.19298 1.21528 0.93760 0.98841 0.91380 1.21062 1.03465 0.93550 1.00385 1.17072 0.95468 0.90203 0.81665 1.91555 1.93365 1.75076 1.50456 0.87876 0.88135 0.86470 0.91138 0.88866 0.74374 0.81709 0.79450 0.90908 0.84300 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 14.32 29.02 0.42 -0.62 16 2 C -0.17 -1.15 9.66 -36.02 -0.35 -1.49 16 3 C 0.14 1.20 4.99 -5.19 -0.03 1.17 16 4 N -1.11 -10.56 5.99 -11.65 -0.07 -10.63 16 5 S 2.70 35.57 5.48 -107.50 -0.59 34.98 16 6 O -0.95 -14.90 16.96 -57.17 -0.97 -15.87 16 7 O -0.95 -14.50 16.89 -57.17 -0.97 -15.47 16 8 C -0.71 -10.16 5.89 -39.58 -0.23 -10.39 16 9 C 0.05 0.79 9.09 -39.18 -0.36 0.44 16 10 C -0.12 -2.10 5.87 -104.97 -0.62 -2.71 16 11 C 0.47 10.63 7.72 -12.43 -0.10 10.53 16 12 O -0.57 -15.28 15.92 5.27 0.08 -15.19 16 13 N -0.56 -12.81 5.03 -11.90 -0.06 -12.87 16 14 C -0.30 -7.93 10.16 -15.00 -0.15 -8.08 16 15 H 0.13 3.88 7.38 -52.48 -0.39 3.49 16 16 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 17 N -0.86 -23.33 13.95 55.50 0.77 -22.56 16 18 Si 0.88 17.70 27.74 -169.99 -4.71 12.98 16 19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.27 -4.81 6.52 56.52 0.37 -4.44 16 22 C -0.04 -0.50 9.54 -39.18 -0.37 -0.87 16 23 C -0.17 -1.97 10.01 -39.57 -0.40 -2.37 16 24 C 0.18 2.29 6.81 -39.26 -0.27 2.02 16 25 F -0.13 -1.46 12.89 2.25 0.03 -1.43 16 26 H 0.10 0.49 8.06 -52.48 -0.42 0.07 16 27 H 0.10 0.58 7.84 -52.49 -0.41 0.17 16 28 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 29 H 0.07 0.57 6.39 -51.93 -0.33 0.24 16 30 H 0.09 0.83 7.24 -51.93 -0.38 0.45 16 31 H 0.42 3.14 8.64 -34.47 -0.30 2.84 16 32 H 0.17 2.89 6.91 -52.49 -0.36 2.53 16 33 H 0.37 7.20 3.79 -40.82 -0.15 7.05 16 34 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.14 1.71 6.40 -52.49 -0.34 1.38 16 36 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -33.59 328.21 -7.17 -40.77 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -3.09 Total: 11.68 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -2.55 Total: -11.34 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.64 Total: -46.06 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -1.85 Total: -46.53 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.03 Total: -1.43 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -4.71 Total: 12.98 kcal Atomic # 16 Polarization: 35.57 SS G_CDS: -0.59 Total: 34.98 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.59 -7.17 -40.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749603134.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.399 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds