Wall clock time and date at job start Tue Mar 31 2020 15:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 119.99853 * 2 1 4 4 N 1.46508 * 109.47193 * 124.99985 * 3 2 1 5 5 S 1.65595 * 119.99876 * 165.00215 * 4 3 2 6 6 O 1.42105 * 106.40149 * 178.54167 * 5 4 3 7 7 O 1.42098 * 106.40317 * 311.46040 * 5 4 3 8 8 C 1.76204 * 107.21987 * 65.00402 * 5 4 3 9 9 C 1.37835 * 119.94023 * 114.72369 * 8 5 4 10 10 C 1.39697 * 119.87322 * 179.79120 * 9 8 5 11 11 C 1.47609 * 120.12470 * 180.22657 * 10 9 8 12 12 O 1.21608 * 120.00281 * 0.25758 * 11 10 9 13 13 N 1.34782 * 119.99946 * 180.25275 * 11 10 9 14 14 C 1.36892 * 119.99797 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00330 * 359.97438 * 14 13 11 16 16 C 1.39032 * 119.99991 * 180.02562 * 14 13 11 17 17 N 1.31368 * 119.99931 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99804 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47289 * 90.00397 * 18 16 14 20 20 H 1.48504 * 109.46879 * 210.00670 * 18 16 14 21 21 H 1.48505 * 109.47216 * 330.00230 * 18 16 14 22 22 C 1.39741 * 119.75113 * 0.48220 * 10 9 8 23 23 C 1.37797 * 119.87124 * 359.74704 * 22 10 9 24 24 C 1.38653 * 119.93127 * 294.99639 * 8 5 4 25 25 F 1.35098 * 119.87938 * 0.02562 * 24 8 5 26 26 H 1.08007 * 119.99540 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00297 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00480 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.47277 * 5.00345 * 3 2 1 30 30 H 1.08993 * 109.47815 * 245.00142 * 3 2 1 31 31 H 0.96997 * 120.00091 * 345.00187 * 4 3 2 32 32 H 1.07996 * 120.06393 * 359.97438 * 9 8 5 33 33 H 0.96996 * 120.00018 * 359.97438 * 13 11 10 34 34 H 0.97005 * 119.99521 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.06008 * 179.72261 * 22 10 9 36 36 H 1.07999 * 119.93264 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 16 4.2064 2.4586 1.1798 6 8 4.9022 2.2471 2.4006 7 8 4.8392 2.4218 -0.0920 8 6 3.4430 4.0414 1.3101 9 6 3.6224 4.8002 2.4467 10 6 3.0201 6.0567 2.5467 11 6 3.2126 6.8761 3.7593 12 8 3.9004 6.4597 4.6717 13 7 2.6262 8.0858 3.8553 14 6 2.8051 8.8459 4.9796 15 1 3.4159 8.4761 5.7899 16 6 2.1998 10.0936 5.0789 17 7 2.3720 10.8233 6.1576 18 14 1.1428 10.7330 3.6776 19 1 -0.2650 10.3092 3.8863 20 1 1.2132 12.2159 3.6413 21 1 1.6400 10.1822 2.3912 22 6 2.2303 6.5326 1.4968 23 6 2.0540 5.7633 0.3672 24 6 2.6583 4.5186 0.2714 25 9 2.4809 3.7681 -0.8379 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4028 -0.9313 31 1 2.8994 0.6898 1.8523 32 1 4.2299 4.4254 3.2571 33 1 2.0779 8.4181 3.1274 34 1 1.9499 11.6939 6.2266 35 1 1.7586 7.5014 1.5707 36 1 1.4435 6.1300 -0.4447 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749603134.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:39 Heat of formation + Delta-G solvation = -122.572090 kcal Electronic energy + Delta-G solvation = -25393.026880 eV Core-core repulsion = 21304.768920 eV Total energy + Delta-G solvation = -4088.257960 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.48842 -41.15621 -39.19540 -38.50584 -37.34799 -37.14308 -36.27624 -34.07199 -33.33646 -32.69200 -31.99869 -27.40612 -26.62057 -24.98490 -24.44816 -21.94527 -21.20088 -21.04502 -20.39896 -19.43163 -18.69100 -18.49203 -17.92410 -17.76657 -17.05064 -16.94409 -16.87468 -16.09420 -15.82249 -15.78001 -15.46866 -15.34126 -14.87463 -14.75629 -14.57270 -14.29903 -14.09336 -13.96911 -13.64479 -13.39287 -13.31550 -13.22140 -13.04091 -13.02195 -12.52072 -12.10617 -11.98897 -11.91486 -11.65040 -10.92863 -10.81521 -10.77188 -10.41910 -10.26048 -10.10090 -8.53338 -6.12321 -0.92737 -0.71019 -0.30952 1.23586 1.25335 1.31577 1.41924 1.56569 1.97456 2.16083 2.35249 2.47968 2.59663 2.67013 3.11846 3.12606 3.47062 3.72730 3.76891 3.82937 3.98111 4.14408 4.27115 4.39556 4.46200 4.58225 4.61171 4.75673 4.80842 4.95538 5.10244 5.35509 5.47134 5.71121 5.75124 5.81494 6.01031 6.41769 6.70053 7.18115 7.73208 8.62855 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.003322 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.681106 B = 8427.874344 C = 8987.559034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.179 4.179 3 C 0.130 3.870 4 N -1.098 6.098 5 S 2.716 3.284 6 O -0.979 6.979 7 O -0.967 6.967 8 C -0.718 4.718 9 C 0.037 3.963 10 C -0.145 4.145 11 C 0.474 3.526 12 O -0.624 6.624 13 N -0.561 5.561 14 C -0.335 4.335 15 H 0.061 0.939 16 C -0.008 4.008 17 N -0.916 5.916 18 Si 0.958 3.042 19 H -0.248 1.248 20 H -0.269 1.269 21 H -0.225 1.225 22 C -0.016 4.016 23 C -0.147 4.147 24 C 0.197 3.803 25 F -0.111 7.111 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.126 0.874 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.431 0.569 32 H 0.143 0.857 33 H 0.392 0.608 34 H 0.285 0.715 35 H 0.167 0.833 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.457 -16.591 -20.332 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.198 4.198 3 C 0.006 3.994 4 N -0.862 5.862 5 S 2.803 3.197 6 O -0.969 6.969 7 O -0.957 6.957 8 C -0.804 4.804 9 C 0.017 3.983 10 C -0.150 4.150 11 C 0.264 3.736 12 O -0.512 6.512 13 N -0.199 5.199 14 C -0.464 4.464 15 H 0.079 0.921 16 C -0.209 4.209 17 N -0.555 5.555 18 Si 0.776 3.224 19 H -0.172 1.172 20 H -0.194 1.194 21 H -0.148 1.148 22 C -0.035 4.035 23 C -0.165 4.165 24 C 0.176 3.824 25 F -0.089 7.089 26 H 0.136 0.864 27 H 0.123 0.877 28 H 0.144 0.856 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.269 0.731 32 H 0.161 0.839 33 H 0.229 0.771 34 H 0.095 0.905 35 H 0.184 0.816 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -8.138 -16.662 -19.809 27.134 hybrid contribution -0.698 0.860 0.475 1.206 sum -8.836 -15.802 -19.334 26.487 Atomic orbital electron populations 1.24197 0.95545 1.03419 0.96790 1.22938 0.96333 0.97476 1.03096 1.20873 0.92045 0.98162 0.88354 1.55243 1.49929 1.47961 1.33098 1.01194 0.72992 0.72777 0.72725 1.93589 1.71179 1.85204 1.46948 1.93586 1.72687 1.86464 1.42945 1.30839 1.20229 1.27054 1.02263 1.20752 0.91884 0.91301 0.94401 1.20135 1.02934 0.96169 0.95738 1.18191 0.84487 0.82830 0.88104 1.90654 1.44621 1.73075 1.42806 1.41873 1.44820 1.15691 1.17540 1.19093 1.31377 0.99808 0.96073 0.92115 1.26236 0.98640 0.95165 1.00866 1.69765 1.43476 1.12664 1.29561 0.85480 0.79199 0.79237 0.78460 1.17196 1.19405 1.14751 1.21801 0.91595 0.99861 0.90251 1.21530 1.02432 0.92051 1.00515 1.17264 0.93635 0.90459 0.81089 1.91612 1.92968 1.74826 1.49513 0.86434 0.87716 0.85639 0.90336 0.89111 0.73076 0.83942 0.77084 0.90487 0.81591 0.78473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 14.32 67.79 0.97 -0.44 16 2 C -0.18 -1.93 9.66 25.65 0.25 -1.69 16 3 C 0.13 1.86 4.99 85.63 0.43 2.29 16 4 N -1.10 -18.82 5.99 -190.77 -1.14 -19.97 16 5 S 2.72 69.02 5.48 -56.49 -0.31 68.71 16 6 O -0.98 -31.43 16.96 -128.00 -2.17 -33.60 16 7 O -0.97 -28.21 16.89 -128.00 -2.16 -30.37 16 8 C -0.72 -19.11 5.89 22.27 0.13 -18.98 16 9 C 0.04 1.25 9.09 22.53 0.20 1.45 16 10 C -0.15 -5.02 5.87 -20.09 -0.12 -5.14 16 11 C 0.47 22.23 7.72 86.72 0.67 22.90 16 12 O -0.62 -35.87 15.92 -4.06 -0.06 -35.93 16 13 N -0.56 -25.83 5.03 -309.82 -1.56 -27.39 16 14 C -0.33 -19.01 10.16 84.09 0.85 -18.15 16 15 H 0.06 4.14 7.38 -2.91 -0.02 4.12 16 16 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 17 N -0.92 -52.69 13.95 21.68 0.30 -52.39 16 18 Si 0.96 35.09 27.74 68.60 1.90 36.99 16 19 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 20 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 21 H -0.22 -6.56 6.52 99.48 0.65 -5.92 16 22 C -0.02 -0.38 9.54 22.53 0.21 -0.16 16 23 C -0.15 -2.60 10.01 22.27 0.22 -2.37 16 24 C 0.20 4.21 6.81 22.48 0.15 4.36 16 25 F -0.11 -2.03 12.89 44.97 0.58 -1.45 16 26 H 0.12 0.71 8.06 -2.91 -0.02 0.68 16 27 H 0.10 0.83 7.84 -2.91 -0.02 0.80 16 28 H 0.13 1.13 8.06 -2.91 -0.02 1.11 16 29 H 0.08 0.98 6.39 -2.38 -0.02 0.96 16 30 H 0.09 1.35 7.24 -2.39 -0.02 1.34 16 31 H 0.43 5.76 8.64 -96.75 -0.84 4.92 16 32 H 0.14 5.35 6.91 -2.91 -0.02 5.33 16 33 H 0.39 14.25 3.79 -92.71 -0.35 13.90 16 34 H 0.29 14.82 8.31 -92.70 -0.77 14.05 16 35 H 0.17 3.06 6.40 -2.91 -0.02 3.05 16 36 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -81.89 328.21 -0.26 -82.15 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.08 Total: 29.15 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 4.45 Total: -15.89 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -2.40 Total: -99.75 kcal Atomic # 8 Polarization: -95.51 SS G_CDS: -4.40 Total: -99.90 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.58 Total: -1.45 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 1.90 Total: 36.99 kcal Atomic # 16 Polarization: 69.02 SS G_CDS: -0.31 Total: 68.71 kcal Total: -81.89 -0.26 -82.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749603134.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.423 kcal (2) G-P(sol) polarization free energy of solvation -81.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds