Wall clock time and date at job start Tue Mar 31 2020 15:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81396 * 109.47257 * 2 1 4 4 C 1.76198 * 103.00205 * 180.02562 * 3 2 1 5 5 C 1.39040 * 120.17506 * 0.02562 * 4 3 2 6 6 C 1.37898 * 120.07920 * 179.97438 * 5 4 3 7 7 C 1.38759 * 120.43826 * 359.97438 * 6 5 4 8 8 Cl 1.73601 * 119.82387 * 180.02562 * 7 6 5 9 9 C 1.37815 * 120.35407 * 359.76103 * 7 6 5 10 10 C 1.39820 * 119.90445 * 0.51333 * 9 7 6 11 11 C 1.47246 * 120.21223 * 179.74216 * 10 9 7 12 12 O 1.21530 * 120.00215 * 179.45281 * 11 10 9 13 13 O 1.34777 * 119.99880 * 359.72326 * 11 10 9 14 14 C 1.45198 * 117.00176 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47372 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47127 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47010 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00321 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99998 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00121 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47060 * 90.00378 * 21 19 17 23 23 H 1.48502 * 109.47250 * 209.99776 * 21 19 17 24 24 H 1.48498 * 109.47482 * 330.00211 * 21 19 17 25 25 H 1.08998 * 109.47146 * 59.99675 * 1 2 3 26 26 H 1.08998 * 109.46904 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46926 * 299.99894 * 1 2 3 28 28 H 1.09001 * 109.47034 * 239.99658 * 2 1 3 29 29 H 1.09006 * 109.46989 * 120.00046 * 2 1 3 30 30 H 1.07998 * 119.96232 * 0.02562 * 5 4 3 31 31 H 1.08000 * 119.78084 * 179.97438 * 6 5 4 32 32 H 1.07992 * 120.04957 * 180.25404 * 9 7 6 33 33 H 1.09003 * 109.46718 * 300.00019 * 14 13 11 34 34 H 1.08998 * 109.47176 * 60.00269 * 14 13 11 35 35 H 1.08997 * 109.46822 * 300.00275 * 15 14 13 36 36 H 1.08998 * 109.47020 * 59.99843 * 15 14 13 37 37 H 1.08997 * 109.47714 * 299.99998 * 16 15 14 38 38 H 1.09006 * 109.46930 * 60.00423 * 16 15 14 39 39 H 0.96993 * 120.00319 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.8855 1.5116 -0.0008 5 6 4.4444 0.2385 -0.0017 6 6 5.8149 0.0854 -0.0029 7 6 6.6463 1.1963 -0.0036 8 17 8.3694 0.9851 -0.0057 9 6 6.1115 2.4665 -0.0081 10 6 4.7240 2.6387 -0.0012 11 6 4.1454 3.9927 -0.0003 12 8 2.9388 4.1379 -0.0043 13 8 4.9539 5.0710 -0.0005 14 6 4.3143 6.3745 0.0010 15 6 5.3846 7.4678 -0.0001 16 6 4.7106 8.8413 0.0008 17 6 5.7648 9.9182 0.0003 18 1 6.8109 9.6498 -0.0010 19 6 5.3938 11.2461 0.0016 20 7 4.1199 11.5730 0.0037 21 14 6.7005 12.5810 0.0002 22 1 7.0446 12.9354 -1.4002 23 1 6.1814 13.7826 0.7016 24 1 7.9144 12.0862 0.6981 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8046 -0.6315 -0.0024 31 1 6.2439 -0.9057 -0.0032 32 1 6.7632 3.3276 -0.0128 33 1 3.6919 6.4748 -0.8882 34 1 3.6940 6.4738 0.8918 35 1 6.0072 7.3676 0.8888 36 1 6.0046 7.3684 -0.8911 37 1 4.0881 8.9413 -0.8883 38 1 4.0903 8.9410 0.8917 39 1 3.8589 12.5072 0.0050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752185966.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:11 Heat of formation + Delta-G solvation = -100.304040 kcal Electronic energy + Delta-G solvation = -21991.391707 eV Core-core repulsion = 18435.976081 eV Total energy + Delta-G solvation = -3555.415627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.72413 -39.99321 -37.91287 -37.42432 -35.95272 -33.91679 -33.71743 -32.60629 -32.04744 -29.06691 -26.26632 -25.10552 -24.20943 -24.01204 -22.19309 -21.95551 -19.39621 -18.77703 -18.37243 -17.77069 -17.73007 -16.70041 -16.58501 -16.43910 -15.96838 -15.90700 -15.62408 -15.39685 -14.74253 -14.65817 -14.14392 -13.84323 -13.83857 -13.64233 -13.26735 -13.02837 -12.93717 -12.81563 -12.53980 -12.46242 -12.33710 -12.31426 -12.22773 -12.10109 -11.91879 -11.55066 -11.44112 -11.26783 -10.61145 -10.57593 -10.54637 -10.38857 -8.54904 -8.22046 -6.33583 -0.66079 -0.13442 0.35955 1.02237 1.30687 1.35166 1.41518 1.42796 1.53968 1.62741 2.34796 2.41180 3.11834 3.35621 3.55894 3.90449 3.97998 3.98487 4.01256 4.03419 4.04602 4.11895 4.38569 4.47923 4.58965 4.62784 4.77550 4.78407 4.86132 4.88823 4.89211 4.98573 5.06088 5.22864 5.31628 5.36719 5.48836 5.63021 5.79661 6.18533 6.55361 6.82209 7.35887 8.90280 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.002624 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.668399 B =10668.615211 C =12916.928746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.146 4.146 3 S -0.066 6.066 4 C -0.039 4.039 5 C -0.128 4.128 6 C -0.038 4.038 7 C -0.064 4.064 8 Cl -0.054 7.054 9 C -0.036 4.036 10 C -0.130 4.130 11 C 0.494 3.506 12 O -0.505 6.505 13 O -0.351 6.351 14 C 0.081 3.919 15 C -0.093 4.093 16 C 0.027 3.973 17 C -0.543 4.543 18 H 0.065 0.935 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.969 3.031 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.262 1.262 25 H 0.057 0.943 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.175 0.825 31 H 0.178 0.822 32 H 0.151 0.849 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.067 0.933 37 H -0.003 1.003 38 H -0.003 1.003 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.800 -32.392 -0.014 32.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.294 4.294 3 S 0.182 5.818 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.059 4.059 7 C -0.094 4.094 8 Cl -0.025 7.025 9 C -0.056 4.056 10 C -0.138 4.138 11 C 0.340 3.660 12 O -0.396 6.396 13 O -0.268 6.268 14 C 0.007 3.993 15 C -0.131 4.131 16 C -0.010 4.010 17 C -0.581 4.581 18 H 0.083 0.917 19 C -0.199 4.199 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.186 1.186 25 H 0.076 0.924 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.192 0.808 31 H 0.196 0.804 32 H 0.168 0.832 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.383 -31.214 -0.012 31.216 hybrid contribution 1.057 0.384 -0.009 1.124 sum 0.674 -30.830 -0.021 30.838 Atomic orbital electron populations 1.21486 0.91259 1.04029 1.02650 1.24108 1.01374 0.96907 1.06978 1.87510 0.95314 1.10704 1.88237 1.22392 0.98542 0.95586 0.98924 1.21431 0.95716 0.94998 1.03048 1.21572 0.92093 0.99355 0.92842 1.20843 0.86165 0.94348 1.08086 1.98397 1.09712 1.97439 1.96974 1.21347 0.92977 0.97886 0.93375 1.18527 0.93626 0.88395 1.13271 1.21352 0.85079 0.86250 0.73341 1.90786 1.16047 1.86361 1.46427 1.86518 1.40893 1.15639 1.83738 1.23178 0.96281 0.77831 1.01990 1.21461 0.96994 0.92015 1.02602 1.18925 0.95560 0.91077 0.95487 1.21616 0.93782 0.91801 1.50860 0.91678 1.26013 0.97715 1.01603 0.94596 1.70099 1.17371 1.18455 1.51461 0.85389 0.78932 0.77840 0.78546 1.19698 1.20776 1.18560 0.92386 0.88395 0.92380 0.87734 0.87734 0.80820 0.80423 0.83152 0.91754 0.91742 0.91426 0.91417 0.98465 0.98459 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.92 71.98 0.71 -0.73 16 2 C -0.15 -1.67 5.06 71.98 0.36 -1.30 16 3 S -0.07 -1.52 18.82 -56.49 -1.06 -2.58 16 4 C -0.04 -0.85 6.16 23.01 0.14 -0.71 16 5 C -0.13 -1.69 9.36 22.38 0.21 -1.48 16 6 C -0.04 -0.45 9.80 22.31 0.22 -0.23 16 7 C -0.06 -1.09 6.31 22.29 0.14 -0.95 16 8 Cl -0.05 -0.87 28.94 -2.72 -0.08 -0.94 16 9 C -0.04 -0.79 9.38 22.55 0.21 -0.57 16 10 C -0.13 -3.38 5.89 -19.98 -0.12 -3.50 16 11 C 0.49 16.44 7.87 70.19 0.55 16.99 16 12 O -0.51 -18.90 13.56 19.74 0.27 -18.63 16 13 O -0.35 -12.24 9.47 -56.88 -0.54 -12.78 16 14 C 0.08 3.10 5.48 71.98 0.39 3.49 16 15 C -0.09 -3.94 5.53 30.59 0.17 -3.77 16 16 C 0.03 1.43 4.97 29.85 0.15 1.57 16 17 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 18 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 19 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 20 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 21 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.10 0.84 7.75 -2.39 -0.02 0.82 16 29 H 0.10 0.84 7.76 -2.39 -0.02 0.82 16 30 H 0.17 1.11 5.89 -2.91 -0.02 1.10 16 31 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 32 H 0.15 3.37 7.61 -2.91 -0.02 3.35 16 33 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 39 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -70.01 361.63 5.79 -64.21 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 1.05 Total: 2.97 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 3.84 Total: -21.62 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.28 Total: -57.06 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.27 Total: -31.41 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -1.06 Total: -2.58 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.94 kcal Total: -70.01 5.79 -64.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752185966.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.091 kcal (2) G-P(sol) polarization free energy of solvation -70.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds