Wall clock time and date at job start Tue Mar 31 2020 15:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48500 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47338 * 299.99970 * 3 2 1 6 6 H 1.48503 * 109.47085 * 59.99980 * 3 2 1 7 7 C 1.38816 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99627 * 163.06367 * 7 2 1 9 9 N 1.36930 * 120.00324 * 343.06571 * 7 2 1 10 10 C 1.46924 * 120.63300 * 151.82723 * 9 7 2 11 11 C 1.53194 * 108.89447 * 126.34039 * 10 9 7 12 12 C 1.53349 * 109.14721 * 54.57940 * 11 10 9 13 13 C 1.53003 * 109.41694 * 178.67625 * 12 11 10 14 14 N 1.46500 * 109.47030 * 295.12891 * 13 12 11 15 15 C 1.34776 * 120.00365 * 180.02562 * 14 13 12 16 16 O 1.21708 * 119.99365 * 359.97438 * 15 14 13 17 17 C 1.46568 * 120.00335 * 179.97438 * 15 14 13 18 18 C 1.36680 * 125.45186 * 180.02562 * 17 15 14 19 19 C 1.37526 * 113.28717 * 179.97438 * 18 17 15 20 20 Cl 1.73598 * 122.46075 * 179.97438 * 19 18 17 21 21 C 1.33875 * 115.07806 * 359.97438 * 19 18 17 22 22 S 1.70611 * 110.96093 * 359.72534 * 21 19 18 23 23 C 1.53036 * 109.60956 * 298.70862 * 12 11 10 24 24 C 1.46929 * 120.63078 * 331.84993 * 9 7 2 25 25 H 0.96997 * 119.99488 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.59145 * 246.20128 * 10 9 7 27 27 H 1.09001 * 109.58665 * 6.48479 * 10 9 7 28 28 H 1.08999 * 109.49595 * 174.66017 * 11 10 9 29 29 H 1.08997 * 109.49661 * 294.75715 * 11 10 9 30 30 H 1.09000 * 109.42245 * 58.75320 * 12 11 10 31 31 H 1.08994 * 109.47312 * 55.12644 * 13 12 11 32 32 H 1.09000 * 109.47156 * 175.13126 * 13 12 11 33 33 H 0.96997 * 120.00038 * 359.97438 * 14 13 12 34 34 H 1.08000 * 123.35452 * 0.03292 * 18 17 15 35 35 H 1.08001 * 124.51983 * 180.02562 * 21 19 18 36 36 H 1.08993 * 109.50017 * 301.42937 * 23 12 11 37 37 H 1.08996 * 109.50185 * 181.32584 * 23 12 11 38 38 H 1.09002 * 109.58736 * 353.37125 * 24 9 7 39 39 H 1.08995 * 109.58640 * 113.65901 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0550 -1.2225 -0.2730 9 7 1.3700 -2.3625 0.3443 10 6 1.8136 -3.6528 -0.2007 11 6 2.0698 -4.6198 0.9596 12 6 0.8119 -4.7020 1.8328 13 6 1.0496 -5.6916 2.9753 14 7 1.2325 -7.0372 2.4256 15 6 1.4570 -8.0780 3.2519 16 8 1.5082 -7.8998 4.4548 17 6 1.6394 -9.4243 2.7020 18 6 1.8717 -10.5549 3.4341 19 6 2.0037 -11.6852 2.6618 20 17 2.3043 -13.2518 3.3467 21 6 1.8834 -11.4886 1.3431 22 16 1.5851 -9.8450 0.9957 23 6 0.4975 -3.3208 2.4120 24 6 0.2260 -2.3408 1.2661 25 1 -0.4849 0.8401 -0.0004 26 1 1.0399 -4.0600 -0.8517 27 1 2.7329 -3.5126 -0.7693 28 1 2.3076 -5.6073 0.5643 29 1 2.9048 -4.2563 1.5585 30 1 -0.0283 -5.0417 1.2271 31 1 1.9427 -5.4006 3.5281 32 1 0.1898 -5.6866 3.6452 33 1 1.1913 -7.1793 1.4670 34 1 1.9435 -10.5603 4.5117 35 1 1.9597 -12.2673 0.5987 36 1 1.3473 -2.9697 2.9973 37 1 -0.3830 -3.3861 3.0511 38 1 0.0993 -1.3354 1.6676 39 1 -0.6775 -2.6386 0.7342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760373708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:48 Heat of formation + Delta-G solvation = 0.783067 kcal Electronic energy + Delta-G solvation = -22608.318209 eV Core-core repulsion = 19089.578799 eV Total energy + Delta-G solvation = -3518.739410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.02357 -38.48794 -37.75471 -36.37632 -35.05187 -32.97310 -31.04280 -30.24906 -29.68719 -27.15175 -25.35276 -23.92248 -22.37346 -21.63476 -21.02581 -19.83441 -19.30802 -18.75528 -16.80258 -16.74294 -16.03125 -15.64938 -15.52228 -14.84716 -14.32474 -14.02988 -13.89421 -13.63605 -13.58732 -13.49083 -13.23521 -13.17038 -12.42079 -12.37889 -11.98346 -11.77482 -11.75864 -11.38298 -11.28710 -11.01847 -10.75856 -10.55351 -10.36978 -10.26332 -10.20683 -9.93526 -9.60392 -9.48639 -9.45437 -9.13939 -8.91626 -8.49367 -6.69513 -5.81276 -3.23682 -0.02667 0.77741 1.11449 1.73237 2.07774 2.92854 2.98865 3.35690 3.43961 3.45949 4.34566 4.47882 4.60420 4.72701 5.02269 5.14881 5.18311 5.32125 5.38080 5.45449 5.56104 5.60420 5.79254 5.86186 5.98357 6.06690 6.27121 6.28361 6.39769 6.56094 6.63985 6.71387 6.76989 6.93726 7.26672 7.35224 7.63444 7.78048 7.95248 8.43199 9.19386 9.82791 10.39278 11.27313 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.035888 B = 0.002151 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.013725 B =13014.921340 C =13371.036878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.128 4.128 12 C -0.091 4.091 13 C 0.123 3.877 14 N -0.718 5.718 15 C 0.587 3.413 16 O -0.527 6.527 17 C -0.253 4.253 18 C -0.055 4.055 19 C -0.060 4.060 20 Cl -0.047 7.047 21 C -0.234 4.234 22 S 0.257 5.743 23 C -0.132 4.132 24 C 0.171 3.829 25 H 0.253 0.747 26 H 0.016 0.984 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.398 0.602 34 H 0.164 0.836 35 H 0.180 0.820 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.031 -23.889 2.717 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.168 4.168 12 C -0.110 4.110 13 C 0.001 3.999 14 N -0.369 5.369 15 C 0.372 3.628 16 O -0.405 6.405 17 C -0.374 4.374 18 C -0.087 4.087 19 C -0.100 4.100 20 Cl -0.018 7.018 21 C -0.373 4.373 22 S 0.523 5.477 23 C -0.172 4.172 24 C 0.045 3.955 25 H 0.063 0.937 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.232 0.768 34 H 0.181 0.819 35 H 0.198 0.802 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 1.758 -22.889 2.275 23.069 hybrid contribution 0.642 -0.402 0.822 1.118 sum 2.400 -23.291 3.097 23.618 Atomic orbital electron populations 1.70038 1.05259 1.25406 1.54039 1.25051 0.95301 0.98440 1.00929 0.86236 0.79382 0.83961 0.77281 1.20265 1.21746 1.21540 1.19216 0.92550 0.84797 1.41536 0.91703 1.44054 1.35905 1.01523 1.50036 1.20882 0.97570 0.87033 0.92652 1.22148 0.96997 0.98706 0.98920 1.21391 0.98849 0.95429 0.95338 1.21686 1.01965 0.79366 0.96911 1.45974 1.72602 1.08332 1.09950 1.16827 0.77172 0.82473 0.86339 1.90853 1.50950 1.84542 1.14142 1.24645 1.16497 0.98367 0.97911 1.20512 0.97441 0.88668 1.02130 1.19546 1.09531 0.88695 0.92250 1.98378 1.94514 1.24104 1.84836 1.25281 1.08942 1.03627 0.99404 1.83269 1.63688 0.97399 1.03318 1.22172 1.00450 0.94465 1.00123 1.20771 0.88625 0.98178 0.87900 0.93679 0.96584 0.92850 0.93550 0.92025 0.91201 0.91119 0.91306 0.76753 0.81876 0.80231 0.92293 0.92958 0.89371 0.96383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 11.20 55.49 0.62 -25.15 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.30 2.99 -172.31 -0.52 -14.82 16 10 C 0.15 2.85 6.50 -3.71 -0.02 2.83 16 11 C -0.13 -2.01 5.27 -26.45 -0.14 -2.15 16 12 C -0.09 -1.36 2.19 -90.42 -0.20 -1.56 16 13 C 0.12 1.66 5.06 -4.04 -0.02 1.64 16 14 N -0.72 -8.50 5.27 -61.65 -0.32 -8.82 16 15 C 0.59 7.63 7.78 -12.90 -0.10 7.53 16 16 O -0.53 -8.69 16.84 5.18 0.09 -8.61 16 17 C -0.25 -2.62 6.45 -36.79 -0.24 -2.86 16 18 C -0.05 -0.54 9.89 -40.40 -0.40 -0.94 16 19 C -0.06 -0.51 6.25 -41.37 -0.26 -0.77 16 20 Cl -0.05 -0.38 29.10 -51.86 -1.51 -1.89 16 21 C -0.23 -1.64 10.77 29.20 0.31 -1.32 16 22 S 0.26 1.84 22.15 -107.50 -2.38 -0.55 16 23 C -0.13 -2.35 5.36 -26.61 -0.14 -2.50 16 24 C 0.17 3.91 5.30 -3.70 -0.02 3.89 16 25 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 28 H 0.05 0.59 7.16 -51.93 -0.37 0.22 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.40 3.92 6.76 -40.82 -0.28 3.64 16 34 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 2.29 6.06 -51.93 -0.31 1.97 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 349.17 15.07 5.26 5.26 Total: -1.00 -30.70 349.17 -10.40 -41.09 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.15 Total: 0.24 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.46 Total: -3.15 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.22 Total: -48.79 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.38 Total: -0.55 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.51 Total: -1.89 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.70 -10.40 -41.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760373708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.878 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds