Wall clock time and date at job start Tue Mar 31 2020 15:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48500 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47338 * 299.99970 * 3 2 1 6 6 H 1.48503 * 109.47085 * 59.99980 * 3 2 1 7 7 C 1.38816 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99627 * 163.06367 * 7 2 1 9 9 N 1.36930 * 120.00324 * 343.06571 * 7 2 1 10 10 C 1.46924 * 120.63300 * 151.82723 * 9 7 2 11 11 C 1.53194 * 108.89447 * 126.34039 * 10 9 7 12 12 C 1.53349 * 109.14721 * 54.57940 * 11 10 9 13 13 C 1.53003 * 109.41694 * 178.67625 * 12 11 10 14 14 N 1.46500 * 109.47030 * 295.12891 * 13 12 11 15 15 C 1.34776 * 120.00365 * 180.02562 * 14 13 12 16 16 O 1.21708 * 119.99365 * 359.97438 * 15 14 13 17 17 C 1.46568 * 120.00335 * 179.97438 * 15 14 13 18 18 C 1.36680 * 125.45186 * 180.02562 * 17 15 14 19 19 C 1.37526 * 113.28717 * 179.97438 * 18 17 15 20 20 Cl 1.73598 * 122.46075 * 179.97438 * 19 18 17 21 21 C 1.33875 * 115.07806 * 359.97438 * 19 18 17 22 22 S 1.70611 * 110.96093 * 359.72534 * 21 19 18 23 23 C 1.53036 * 109.60956 * 298.70862 * 12 11 10 24 24 C 1.46929 * 120.63078 * 331.84993 * 9 7 2 25 25 H 0.96997 * 119.99488 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.59145 * 246.20128 * 10 9 7 27 27 H 1.09001 * 109.58665 * 6.48479 * 10 9 7 28 28 H 1.08999 * 109.49595 * 174.66017 * 11 10 9 29 29 H 1.08997 * 109.49661 * 294.75715 * 11 10 9 30 30 H 1.09000 * 109.42245 * 58.75320 * 12 11 10 31 31 H 1.08994 * 109.47312 * 55.12644 * 13 12 11 32 32 H 1.09000 * 109.47156 * 175.13126 * 13 12 11 33 33 H 0.96997 * 120.00038 * 359.97438 * 14 13 12 34 34 H 1.08000 * 123.35452 * 0.03292 * 18 17 15 35 35 H 1.08001 * 124.51983 * 180.02562 * 21 19 18 36 36 H 1.08993 * 109.50017 * 301.42937 * 23 12 11 37 37 H 1.08996 * 109.50185 * 181.32584 * 23 12 11 38 38 H 1.09002 * 109.58736 * 353.37125 * 24 9 7 39 39 H 1.08995 * 109.58640 * 113.65901 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0550 -1.2225 -0.2730 9 7 1.3700 -2.3625 0.3443 10 6 1.8136 -3.6528 -0.2007 11 6 2.0698 -4.6198 0.9596 12 6 0.8119 -4.7020 1.8328 13 6 1.0496 -5.6916 2.9753 14 7 1.2325 -7.0372 2.4256 15 6 1.4570 -8.0780 3.2519 16 8 1.5082 -7.8998 4.4548 17 6 1.6394 -9.4243 2.7020 18 6 1.8717 -10.5549 3.4341 19 6 2.0037 -11.6852 2.6618 20 17 2.3043 -13.2518 3.3467 21 6 1.8834 -11.4886 1.3431 22 16 1.5851 -9.8450 0.9957 23 6 0.4975 -3.3208 2.4120 24 6 0.2260 -2.3408 1.2661 25 1 -0.4849 0.8401 -0.0004 26 1 1.0399 -4.0600 -0.8517 27 1 2.7329 -3.5126 -0.7693 28 1 2.3076 -5.6073 0.5643 29 1 2.9048 -4.2563 1.5585 30 1 -0.0283 -5.0417 1.2271 31 1 1.9427 -5.4006 3.5281 32 1 0.1898 -5.6866 3.6452 33 1 1.1913 -7.1793 1.4670 34 1 1.9435 -10.5603 4.5117 35 1 1.9597 -12.2673 0.5987 36 1 1.3473 -2.9697 2.9973 37 1 -0.3830 -3.3861 3.0511 38 1 0.0993 -1.3354 1.6676 39 1 -0.6775 -2.6386 0.7342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760373708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:47 Heat of formation + Delta-G solvation = -17.380226 kcal Electronic energy + Delta-G solvation = -22609.105828 eV Core-core repulsion = 19089.578799 eV Total energy + Delta-G solvation = -3519.527029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02211 -39.49782 -38.90155 -37.03455 -36.42332 -34.54990 -32.64576 -31.48603 -30.93554 -28.52692 -26.47478 -25.33912 -23.84394 -22.91035 -22.21739 -20.88610 -20.44661 -19.69951 -18.63326 -17.49534 -16.98823 -16.86597 -16.57604 -16.37300 -15.69577 -15.29360 -15.21478 -14.91094 -14.83089 -14.55427 -14.25712 -14.07144 -13.86617 -13.77874 -13.44064 -13.00476 -12.81484 -12.58630 -12.45000 -12.40068 -12.23556 -11.98877 -11.90200 -11.82873 -11.62711 -11.40972 -11.13044 -11.07370 -10.52765 -10.32216 -9.99260 -9.51204 -8.65080 -7.86184 -5.30642 -0.71368 0.18529 0.45448 1.02913 1.45698 1.45984 1.48621 1.58298 2.00866 2.04252 2.52192 3.28482 3.61986 3.72615 3.82908 3.91930 3.95259 4.08291 4.10770 4.48975 4.52449 4.55688 4.69250 4.73192 4.78548 4.86693 4.90083 4.94957 5.03521 5.13058 5.25568 5.29956 5.32430 5.44646 5.57330 5.68025 5.81221 6.34631 6.41846 7.00576 7.17566 7.90175 8.40337 9.20036 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.035888 B = 0.002151 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.013725 B =13014.921340 C =13371.036878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.052 4.052 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.612 5.612 10 C 0.139 3.861 11 C -0.116 4.116 12 C -0.079 4.079 13 C 0.135 3.865 14 N -0.709 5.709 15 C 0.588 3.412 16 O -0.571 6.571 17 C -0.287 4.287 18 C -0.056 4.056 19 C -0.078 4.078 20 Cl -0.047 7.047 21 C -0.219 4.219 22 S 0.318 5.682 23 C -0.122 4.122 24 C 0.177 3.823 25 H 0.249 0.751 26 H 0.020 0.980 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.410 0.590 34 H 0.153 0.847 35 H 0.208 0.792 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.781 -25.972 1.696 26.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.248 4.248 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.389 4.389 8 H 0.082 0.918 9 N -0.336 5.336 10 C 0.014 3.986 11 C -0.155 4.155 12 C -0.098 4.098 13 C 0.012 3.988 14 N -0.360 5.360 15 C 0.375 3.625 16 O -0.452 6.452 17 C -0.408 4.408 18 C -0.090 4.090 19 C -0.118 4.118 20 Cl -0.019 7.019 21 C -0.358 4.358 22 S 0.585 5.415 23 C -0.161 4.161 24 C 0.051 3.949 25 H 0.058 0.942 26 H 0.038 0.962 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.246 0.754 34 H 0.171 0.829 35 H 0.225 0.775 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 2.525 -25.005 1.221 25.161 hybrid contribution 0.408 0.162 1.043 1.131 sum 2.933 -24.843 2.264 25.118 Atomic orbital electron populations 1.70179 1.06559 1.25668 1.55671 1.25765 0.96048 1.01389 1.01557 0.85269 0.78662 0.80176 0.76725 1.19200 1.21951 1.21830 1.19520 0.92753 0.86148 1.40462 0.91771 1.44341 1.35973 1.02464 1.50842 1.21074 0.97367 0.85918 0.94225 1.22011 0.96830 0.99407 0.97273 1.21226 0.98913 0.94016 0.95682 1.21389 1.01656 0.79753 0.95987 1.45802 1.72238 1.07491 1.10505 1.17122 0.76115 0.83427 0.85795 1.90827 1.52968 1.85375 1.16020 1.24415 1.18913 0.97022 1.00417 1.20544 0.97167 0.89297 1.02013 1.19505 1.11105 0.88421 0.92769 1.98377 1.94615 1.23875 1.84996 1.25698 1.06254 1.04541 0.99345 1.83038 1.61898 0.96648 0.99887 1.21968 1.00994 0.94901 0.98270 1.20576 0.87859 0.97503 0.88985 0.94185 0.96186 0.92997 0.89693 0.92985 0.90206 0.91947 0.91288 0.75359 0.82941 0.77514 0.93059 0.91143 0.93145 0.98205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.78 11.20 21.65 0.24 -54.54 16 2 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 3 Si 0.96 44.67 29.59 68.60 2.03 46.70 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.26 -14.00 9.58 84.04 0.81 -13.19 16 8 H 0.06 3.41 7.88 -2.91 -0.02 3.39 16 9 N -0.61 -29.70 2.99 -699.08 -2.09 -31.79 16 10 C 0.14 5.29 6.50 86.36 0.56 5.85 16 11 C -0.12 -3.35 5.27 30.78 0.16 -3.19 16 12 C -0.08 -2.21 2.19 -10.66 -0.02 -2.23 16 13 C 0.14 3.39 5.06 86.38 0.44 3.82 16 14 N -0.71 -15.12 5.27 -467.18 -2.46 -17.59 16 15 C 0.59 14.55 7.78 86.42 0.67 15.22 16 16 O -0.57 -18.76 16.84 -4.37 -0.07 -18.83 16 17 C -0.29 -5.43 6.45 24.08 0.16 -5.27 16 18 C -0.06 -1.06 9.89 21.74 0.21 -0.84 16 19 C -0.08 -1.19 6.25 21.11 0.13 -1.05 16 20 Cl -0.05 -0.70 29.10 -2.72 -0.08 -0.77 16 21 C -0.22 -2.32 10.77 66.83 0.72 -1.60 16 22 S 0.32 3.44 22.15 -56.49 -1.25 2.19 16 23 C -0.12 -4.25 5.36 30.67 0.16 -4.09 16 24 C 0.18 8.20 5.30 86.37 0.46 8.66 16 25 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 1.95 7.93 -2.39 -0.02 1.94 16 28 H 0.08 1.82 7.16 -2.39 -0.02 1.80 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.41 6.65 6.76 -92.71 -0.63 6.02 16 34 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 35 H 0.21 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.05 2.71 6.06 -2.39 -0.01 2.70 16 39 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: -1.00 -68.32 349.17 1.64 -66.68 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.45 Total: 8.37 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 4.88 Total: -0.41 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -4.31 Total: -103.92 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.07 Total: -18.83 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.25 Total: 2.19 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.77 kcal Total: -68.32 1.64 -66.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760373708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.297 kcal (2) G-P(sol) polarization free energy of solvation -68.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds