Wall clock time and date at job start Tue Mar 31 2020 15:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99948 * 2 1 4 4 H 1.48494 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46899 * 300.00029 * 3 2 1 6 6 H 1.48502 * 109.46993 * 59.99808 * 3 2 1 7 7 C 1.38814 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99798 * 163.06774 * 7 2 1 9 9 N 1.36938 * 119.99984 * 343.07216 * 7 2 1 10 10 C 1.46920 * 120.62889 * 151.82550 * 9 7 2 11 11 C 1.53196 * 108.76394 * 126.40909 * 10 9 7 12 12 C 1.53040 * 109.31563 * 54.65246 * 11 10 9 13 13 C 1.53039 * 109.52506 * 298.61565 * 12 11 10 14 14 H 1.08998 * 109.50131 * 301.41807 * 13 12 11 15 15 C 1.53002 * 109.49832 * 181.35246 * 13 12 11 16 16 N 1.46497 * 109.47419 * 175.00067 * 15 13 12 17 17 C 1.34777 * 120.00106 * 179.97438 * 16 15 13 18 18 O 1.21701 * 120.00204 * 0.02562 * 17 16 15 19 19 C 1.46578 * 119.99816 * 179.97438 * 17 16 15 20 20 C 1.36671 * 125.44775 * 180.02562 * 19 17 16 21 21 C 1.37528 * 113.28719 * 179.97438 * 20 19 17 22 22 Cl 1.73599 * 122.46283 * 179.97438 * 21 20 19 23 23 C 1.33886 * 115.07694 * 359.97438 * 21 20 19 24 24 S 1.70616 * 110.95729 * 359.76356 * 23 21 20 25 25 C 1.46930 * 120.62807 * 331.85188 * 9 7 2 26 26 H 0.97004 * 120.00436 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.58462 * 246.19916 * 10 9 7 28 28 H 1.08994 * 109.58745 * 6.48452 * 10 9 7 29 29 H 1.08997 * 109.50496 * 294.69619 * 11 10 9 30 30 H 1.08997 * 109.48868 * 174.60111 * 11 10 9 31 31 H 1.08994 * 109.46339 * 178.60533 * 12 11 10 32 32 H 1.08996 * 109.45832 * 58.62986 * 12 11 10 33 33 H 1.08998 * 109.47334 * 295.00146 * 15 13 12 34 34 H 1.09002 * 109.46817 * 55.00139 * 15 13 12 35 35 H 0.97002 * 119.99676 * 0.02562 * 16 15 13 36 36 H 1.07998 * 123.35958 * 359.96595 * 20 19 17 37 37 H 1.07995 * 124.51853 * 180.02562 * 23 21 20 38 38 H 1.08998 * 109.58993 * 113.80281 * 25 9 7 39 39 H 1.09000 * 109.70599 * 353.43601 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0551 -1.2224 -0.2718 9 7 1.3701 -2.3622 0.3464 10 6 1.8139 -3.6528 -0.1976 11 6 2.0676 -4.6169 0.9656 12 6 0.8121 -4.7005 1.8367 13 6 0.4975 -3.3188 2.4147 14 1 1.3472 -2.9672 2.9999 15 6 -0.7381 -3.4100 3.3124 16 7 -0.9686 -2.1158 3.9590 17 6 -2.0098 -1.9586 4.8002 18 8 -2.7583 -2.8920 5.0231 19 6 -2.2400 -0.6639 5.4476 20 6 -3.2564 -0.3817 6.3166 21 6 -3.2351 0.9145 6.7757 22 17 -4.4168 1.5279 7.8898 23 6 -2.2361 1.6685 6.3004 24 16 -1.2479 0.7724 5.2368 25 6 0.2260 -2.3398 1.2680 26 1 -0.4851 0.8400 0.0004 27 1 1.0403 -4.0606 -0.8483 28 1 2.7333 -3.5130 -0.7662 29 1 2.9023 -4.2529 1.5646 30 1 2.3047 -5.6058 0.5733 31 1 0.9814 -5.4048 2.6512 32 1 -0.0280 -5.0407 1.2312 33 1 -1.6067 -3.6746 2.7093 34 1 -0.5783 -4.1733 4.0740 35 1 -0.3722 -1.3717 3.7810 36 1 -4.0020 -1.1045 6.6131 37 1 -2.0748 2.7045 6.5592 38 1 -0.6770 -2.6405 0.7369 39 1 0.0967 -1.3345 1.6689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760837668.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:25 Heat of formation + Delta-G solvation = -16.635143 kcal Electronic energy + Delta-G solvation = -23268.202543 eV Core-core repulsion = 19748.707822 eV Total energy + Delta-G solvation = -3519.494720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00715 -39.49849 -38.91616 -37.05246 -36.18301 -34.82687 -32.73365 -31.65460 -30.81487 -27.51502 -27.12399 -25.65158 -23.87397 -22.79833 -22.11361 -20.89719 -20.41359 -19.63082 -18.67781 -17.50843 -17.06852 -16.91001 -16.53264 -16.34311 -15.75771 -15.39908 -15.10225 -14.88465 -14.69042 -14.52777 -14.27556 -14.05955 -13.89148 -13.72967 -13.63391 -12.90064 -12.87650 -12.54494 -12.48163 -12.38682 -12.19059 -11.94644 -11.90452 -11.78764 -11.54343 -11.45960 -11.12712 -11.07178 -10.52788 -10.31330 -10.01393 -9.57502 -8.63360 -7.83058 -5.29182 -0.73226 0.14255 0.44614 1.00724 1.42486 1.48213 1.52332 1.61552 1.97714 2.09116 2.54552 3.29398 3.56803 3.65190 3.88714 3.99890 4.08240 4.08476 4.14925 4.36705 4.45277 4.55501 4.63400 4.77216 4.81412 4.87896 4.88835 4.89971 5.05111 5.16784 5.19966 5.32472 5.39624 5.45251 5.57334 5.70090 5.79208 6.31643 6.42919 6.96485 7.19075 7.89377 8.42151 9.22543 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012910 B = 0.003745 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.327306 B = 7474.105148 C = 9311.944400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.041 4.041 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.298 1.298 6 H -0.279 1.279 7 C -0.264 4.264 8 H 0.063 0.937 9 N -0.611 5.611 10 C 0.135 3.865 11 C -0.121 4.121 12 C -0.099 4.099 13 C -0.114 4.114 14 H 0.073 0.927 15 C 0.137 3.863 16 N -0.713 5.713 17 C 0.589 3.411 18 O -0.567 6.567 19 C -0.284 4.284 20 C -0.051 4.051 21 C -0.073 4.073 22 Cl -0.041 7.041 23 C -0.218 4.218 24 S 0.286 5.714 25 C 0.188 3.812 26 H 0.250 0.750 27 H 0.009 0.991 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.404 0.596 36 H 0.161 0.839 37 H 0.208 0.792 38 H -0.013 1.013 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.922 0.342 14.040 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.237 4.237 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.225 1.225 6 H -0.205 1.205 7 C -0.394 4.394 8 H 0.081 0.919 9 N -0.334 5.334 10 C 0.010 3.990 11 C -0.160 4.160 12 C -0.137 4.137 13 C -0.134 4.134 14 H 0.091 0.909 15 C 0.013 3.987 16 N -0.363 5.363 17 C 0.376 3.624 18 O -0.449 6.449 19 C -0.405 4.405 20 C -0.085 4.085 21 C -0.113 4.113 22 Cl -0.012 7.012 23 C -0.357 4.357 24 S 0.553 5.447 25 C 0.062 3.938 26 H 0.060 0.940 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.240 0.760 36 H 0.178 0.822 37 H 0.225 0.775 38 H 0.005 0.995 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.295 0.194 13.395 13.459 hybrid contribution -1.115 1.150 0.391 1.649 sum -2.410 1.344 13.786 14.060 Atomic orbital electron populations 1.70190 1.06423 1.25755 1.55221 1.25682 0.95904 1.01010 1.01136 0.85382 0.78644 0.80398 0.77107 1.19489 1.22526 1.20527 1.19511 0.92758 0.85992 1.41141 0.91904 1.44324 1.36051 1.02381 1.50657 1.21120 0.97002 0.86374 0.94531 1.21867 0.97556 0.99303 0.97303 1.21357 0.98001 0.94932 0.99374 1.21943 0.96314 0.98424 0.96714 0.90887 1.21402 0.97858 0.84053 0.95355 1.45937 1.29390 1.15618 1.45309 1.17076 0.80555 0.86244 0.78547 1.90782 1.47455 1.42069 1.64574 1.24445 1.06054 0.99653 1.10306 1.20558 0.97717 0.95692 0.94557 1.19482 0.96582 0.93749 1.01486 1.98367 1.55987 1.86944 1.59947 1.25661 0.99542 1.07237 1.03257 1.83621 1.24679 0.97877 1.38531 1.20588 0.87308 0.97524 0.88342 0.94031 0.97315 0.93072 0.92359 0.89905 0.89997 0.92647 0.92579 0.90034 0.76005 0.82169 0.77522 0.99506 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.84 11.19 21.65 0.24 -51.60 16 2 C -0.04 -2.18 4.92 84.86 0.42 -1.76 16 3 Si 0.96 42.03 29.59 68.60 2.03 44.06 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.26 -13.84 9.58 84.03 0.81 -13.04 16 8 H 0.06 3.26 7.88 -2.91 -0.02 3.24 16 9 N -0.61 -29.21 2.99 -699.08 -2.09 -31.30 16 10 C 0.14 5.37 6.52 86.36 0.56 5.93 16 11 C -0.12 -3.69 6.08 30.67 0.19 -3.50 16 12 C -0.10 -2.87 5.17 30.62 0.16 -2.71 16 13 C -0.11 -3.82 2.37 -10.71 -0.03 -3.85 16 14 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 15 C 0.14 4.31 5.07 86.38 0.44 4.75 16 16 N -0.71 -22.68 5.33 -467.18 -2.49 -25.16 16 17 C 0.59 19.37 7.78 86.42 0.67 20.04 16 18 O -0.57 -21.73 16.84 -4.35 -0.07 -21.80 16 19 C -0.28 -7.81 6.45 24.08 0.16 -7.65 16 20 C -0.05 -1.28 9.89 21.73 0.21 -1.07 16 21 C -0.07 -1.56 6.25 21.11 0.13 -1.43 16 22 Cl -0.04 -0.78 29.10 -2.72 -0.08 -0.86 16 23 C -0.22 -4.06 10.78 66.83 0.72 -3.34 16 24 S 0.29 6.35 22.15 -56.49 -1.25 5.10 16 25 C 0.19 8.40 4.39 86.36 0.38 8.78 16 26 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 27 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.40 12.59 6.82 -92.71 -0.63 11.96 16 36 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.21 2.60 8.06 -2.91 -0.02 2.58 16 38 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H 0.06 3.11 5.27 -2.39 -0.01 3.10 16 Total: -1.00 -63.34 349.37 1.55 -61.80 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.44 Total: 18.63 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 4.82 Total: 1.15 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -4.34 Total: -108.06 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.07 Total: -21.80 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 6.35 SS G_CDS: -1.25 Total: 5.10 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -63.34 1.55 -61.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760837668.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.163 kcal (2) G-P(sol) polarization free energy of solvation -63.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds