Wall clock time and date at job start Tue Mar 31 2020 15:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86794 * 120.00109 * 2 1 4 4 H 1.48491 * 109.47308 * 240.00329 * 3 2 1 5 5 H 1.48502 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47200 * 120.00073 * 3 2 1 7 7 C 1.38794 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00175 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00307 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99913 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47161 * 179.97438 * 10 9 7 12 12 N 1.30974 * 126.43372 * 89.99966 * 11 10 9 13 13 C 1.35243 * 105.57873 * 179.74146 * 12 11 10 14 14 C 1.48335 * 126.41500 * 179.97438 * 13 12 11 15 15 C 1.39441 * 120.00184 * 359.72030 * 14 13 12 16 16 C 1.37756 * 119.99934 * 179.74209 * 15 14 13 17 17 C 1.39436 * 119.99837 * 0.56008 * 16 15 14 18 18 C 1.48335 * 119.99743 * 179.71978 * 17 16 15 19 19 C 1.40877 * 126.04503 * 359.68771 * 18 17 16 20 20 C 1.35071 * 107.84935 * 179.88944 * 19 18 17 21 21 N 1.35051 * 107.99113 * 0.37170 * 20 19 18 22 22 H 0.97000 * 125.92860 * 179.74013 * 21 20 19 23 23 N 1.31668 * 126.04286 * 180.02562 * 18 17 16 24 24 C 1.39437 * 120.00374 * 359.69143 * 17 16 15 25 25 C 1.37754 * 119.99537 * 0.02998 * 24 17 16 26 26 N 1.30800 * 107.16386 * 359.97438 * 13 12 11 27 27 O 1.21288 * 110.08931 * 0.02562 * 26 13 12 28 28 H 0.97001 * 119.99743 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47382 * 60.00015 * 10 9 7 30 30 H 1.09000 * 109.47606 * 299.99883 * 10 9 7 31 31 H 1.08004 * 119.99925 * 0.02562 * 15 14 13 32 32 H 1.08002 * 119.99854 * 180.29645 * 16 15 14 33 33 H 1.08000 * 126.07900 * 0.03825 * 19 18 17 34 34 H 1.08002 * 126.00695 * 180.13949 * 20 19 18 35 35 H 1.07998 * 120.00303 * 180.02562 * 24 17 16 36 36 H 1.08002 * 119.99595 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 7 1.7143 -6.0315 -1.0533 13 6 1.2767 -7.2170 -0.5713 14 6 0.8407 -8.3865 -1.3728 15 6 0.8537 -8.3212 -2.7656 16 6 0.4538 -9.4092 -3.5100 17 6 0.0248 -10.5717 -2.8705 18 6 -0.4117 -11.7410 -3.6720 19 6 -0.4504 -11.8142 -5.0784 20 6 -0.9017 -13.0414 -5.4168 21 7 -1.1501 -13.7233 -4.2779 22 1 -1.4871 -14.6310 -4.2199 23 7 -0.8375 -12.8919 -3.1948 24 6 0.0068 -10.6352 -1.4777 25 6 0.4121 -9.5492 -0.7335 26 7 1.3102 -7.1390 0.7339 27 8 1.7150 -6.0480 1.0758 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 0.8894 30 1 3.1245 -3.7314 -0.8905 31 1 1.1818 -7.4192 -3.2609 32 1 0.4685 -9.3602 -4.5888 33 1 -0.1670 -11.0294 -5.7641 34 1 -1.0430 -13.4111 -6.4217 35 1 -0.3251 -11.5357 -0.9825 36 1 0.3985 -9.5986 0.3453 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761608309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:35 Heat of formation + Delta-G solvation = 164.597440 kcal Electronic energy + Delta-G solvation = -22562.768559 eV Core-core repulsion = 18950.025180 eV Total energy + Delta-G solvation = -3612.743379 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.21317 -41.49071 -39.21157 -35.66429 -33.77110 -32.58704 -32.47867 -31.37353 -30.25424 -29.88658 -28.43760 -25.63275 -25.04883 -23.45035 -22.85134 -21.41624 -21.16878 -20.12395 -18.61553 -18.12605 -17.84605 -17.25380 -16.27882 -15.66001 -15.10552 -15.05054 -14.90977 -14.50706 -14.26623 -14.06461 -13.80688 -13.62403 -13.32748 -13.24301 -13.09246 -12.83370 -12.06902 -11.78194 -11.69961 -11.49132 -11.16997 -11.10090 -11.07383 -10.98379 -10.70817 -10.54018 -10.15259 -9.53927 -9.20533 -9.17475 -9.13866 -8.57601 -8.34541 -6.73908 -6.35430 -4.10338 0.38728 1.25954 1.38477 1.62193 2.26598 2.45230 2.81448 3.03684 3.18955 3.20912 3.24293 3.40613 3.64932 3.80680 4.06487 4.11778 4.17310 4.38467 4.76063 4.83280 4.93419 5.01985 5.13115 5.20719 5.28175 5.32231 5.35973 5.54671 5.61362 5.69514 5.78182 5.92022 6.01211 6.10996 6.20343 6.26061 6.36960 6.39151 6.68891 6.85592 7.24257 7.48372 8.22834 8.40356 9.10330 10.72439 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029169 B = 0.001949 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.685112 B =14362.536590 C =14942.074521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.925 3.075 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.080 0.920 9 S -0.080 6.080 10 C -0.044 4.044 11 C 0.232 3.768 12 N -0.473 5.473 13 C 0.203 3.797 14 C -0.002 4.002 15 C -0.075 4.075 16 C -0.096 4.096 17 C -0.008 4.008 18 C 0.117 3.883 19 C -0.257 4.257 20 C 0.058 3.942 21 N -0.476 5.476 22 H 0.440 0.560 23 N -0.283 5.283 24 C -0.094 4.094 25 C -0.087 4.087 26 N -0.382 5.382 27 O 0.082 5.918 28 H 0.271 0.729 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.179 0.821 35 H 0.135 0.865 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.359 -24.233 -9.446 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.750 3.250 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.675 4.675 8 H 0.098 0.902 9 S 0.145 5.855 10 C -0.193 4.193 11 C 0.012 3.988 12 N -0.207 5.207 13 C -0.067 4.067 14 C -0.005 4.005 15 C -0.095 4.095 16 C -0.115 4.115 17 C -0.010 4.010 18 C -0.047 4.047 19 C -0.286 4.286 20 C -0.089 4.089 21 N -0.184 5.184 22 H 0.284 0.716 23 N -0.107 5.107 24 C -0.113 4.113 25 C -0.107 4.107 26 N -0.090 5.090 27 O 0.022 5.978 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.130 0.870 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.170 0.830 34 H 0.196 0.804 35 H 0.152 0.848 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.436 -25.741 -8.318 27.090 hybrid contribution 1.745 1.392 -0.732 2.349 sum 0.309 -24.349 -9.050 25.979 Atomic orbital electron populations 1.69992 1.06021 1.27950 1.46215 1.25027 0.95126 0.99231 0.94134 0.86124 0.79172 0.80666 0.79006 1.19735 1.20767 1.19730 1.22668 0.94852 0.90059 1.59936 0.90173 1.85230 1.05069 0.98202 1.96969 1.22009 1.04456 0.85732 1.07066 1.28166 0.93864 0.96827 0.79993 1.72024 1.18642 1.01737 1.28345 1.23846 1.01002 0.94115 0.87739 1.17465 1.01258 0.89594 0.92146 1.21176 0.97263 0.99013 0.92024 1.21032 0.98642 0.91544 1.00328 1.17922 0.99937 0.91007 0.92178 1.20738 0.98804 0.92490 0.92717 1.21573 1.13440 0.99036 0.94566 1.22559 1.00284 0.93380 0.92668 1.46338 1.53151 1.15290 1.03641 0.71581 1.77548 1.21422 1.02349 1.09399 1.21091 0.99027 0.98621 0.92579 1.21110 0.97316 0.91567 1.00667 1.74832 1.18556 1.00711 1.14912 1.85278 1.59062 1.17654 1.35776 0.91893 0.87803 0.86974 0.83883 0.84692 0.82964 0.80379 0.84754 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.84 13.22 55.49 0.73 -24.11 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 20.43 29.55 -169.99 -5.02 15.41 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.53 -14.03 9.50 30.94 0.29 -13.74 16 8 H 0.08 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.08 -1.99 21.42 -107.50 -2.30 -4.30 16 10 C -0.04 -0.83 6.30 36.01 0.23 -0.60 16 11 C 0.23 4.31 7.75 -12.98 -0.10 4.21 16 12 N -0.47 -8.79 11.25 -9.88 -0.11 -8.91 16 13 C 0.20 3.52 7.79 -156.10 -1.22 2.30 16 14 C 0.00 -0.03 5.88 -104.85 -0.62 -0.65 16 15 C -0.07 -0.95 9.68 -39.31 -0.38 -1.33 16 16 C -0.10 -1.01 9.56 -39.31 -0.38 -1.39 16 17 C -0.01 -0.09 5.88 -104.85 -0.62 -0.70 16 18 C 0.12 1.24 6.99 -82.78 -0.58 0.67 16 19 C -0.26 -2.07 10.17 -39.71 -0.40 -2.47 16 20 C 0.06 0.33 11.97 -17.26 -0.21 0.13 16 21 N -0.48 -3.25 7.35 30.42 0.22 -3.02 16 22 H 0.44 1.49 8.96 -182.62 -1.64 -0.15 16 23 N -0.28 -3.02 12.36 33.42 0.41 -2.61 16 24 C -0.09 -1.09 9.67 -39.31 -0.38 -1.47 16 25 C -0.09 -1.11 9.68 -39.31 -0.38 -1.49 16 26 N -0.38 -6.86 11.85 30.97 0.37 -6.49 16 27 O 0.08 1.51 11.29 18.03 0.20 1.71 16 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 30 H 0.11 2.00 8.14 -51.92 -0.42 1.58 16 31 H 0.14 1.79 7.86 -52.48 -0.41 1.37 16 32 H 0.14 1.05 7.02 -52.49 -0.37 0.69 16 33 H 0.15 0.92 7.32 -52.49 -0.38 0.54 16 34 H 0.18 0.29 8.06 -52.49 -0.42 -0.13 16 35 H 0.13 1.41 7.84 -52.49 -0.41 1.00 16 36 H 0.13 1.65 7.86 -52.49 -0.41 1.24 16 LS Contribution 343.25 15.07 5.17 5.17 Total: -1.00 -32.89 343.25 -9.59 -42.49 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.44 Total: -0.73 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -4.83 Total: -14.61 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 1.63 Total: -45.14 kcal Atomic # 8 Polarization: 1.51 SS G_CDS: 0.20 Total: 1.71 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -2.30 Total: -4.30 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.89 -9.59 -42.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761608309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.083 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds