Wall clock time and date at job start Tue Mar 31 2020 15:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86794 * 120.00109 * 2 1 4 4 H 1.48491 * 109.47308 * 240.00329 * 3 2 1 5 5 H 1.48502 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47200 * 120.00073 * 3 2 1 7 7 C 1.38794 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00175 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00307 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99913 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47161 * 179.97438 * 10 9 7 12 12 N 1.30974 * 126.43372 * 89.99966 * 11 10 9 13 13 C 1.35243 * 105.57873 * 179.74146 * 12 11 10 14 14 C 1.48335 * 126.41500 * 179.97438 * 13 12 11 15 15 C 1.39441 * 120.00184 * 359.72030 * 14 13 12 16 16 C 1.37756 * 119.99934 * 179.74209 * 15 14 13 17 17 C 1.39436 * 119.99837 * 0.56008 * 16 15 14 18 18 C 1.48335 * 119.99743 * 179.71978 * 17 16 15 19 19 C 1.40877 * 126.04503 * 359.68771 * 18 17 16 20 20 C 1.35071 * 107.84935 * 179.88944 * 19 18 17 21 21 N 1.35051 * 107.99113 * 0.37170 * 20 19 18 22 22 H 0.97000 * 125.92860 * 179.74013 * 21 20 19 23 23 N 1.31668 * 126.04286 * 180.02562 * 18 17 16 24 24 C 1.39437 * 120.00374 * 359.69143 * 17 16 15 25 25 C 1.37754 * 119.99537 * 0.02998 * 24 17 16 26 26 N 1.30800 * 107.16386 * 359.97438 * 13 12 11 27 27 O 1.21288 * 110.08931 * 0.02562 * 26 13 12 28 28 H 0.97001 * 119.99743 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47382 * 60.00015 * 10 9 7 30 30 H 1.09000 * 109.47606 * 299.99883 * 10 9 7 31 31 H 1.08004 * 119.99925 * 0.02562 * 15 14 13 32 32 H 1.08002 * 119.99854 * 180.29645 * 16 15 14 33 33 H 1.08000 * 126.07900 * 0.03825 * 19 18 17 34 34 H 1.08002 * 126.00695 * 180.13949 * 20 19 18 35 35 H 1.07998 * 120.00303 * 180.02562 * 24 17 16 36 36 H 1.08002 * 119.99595 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 7 1.7143 -6.0315 -1.0533 13 6 1.2767 -7.2170 -0.5713 14 6 0.8407 -8.3865 -1.3728 15 6 0.8537 -8.3212 -2.7656 16 6 0.4538 -9.4092 -3.5100 17 6 0.0248 -10.5717 -2.8705 18 6 -0.4117 -11.7410 -3.6720 19 6 -0.4504 -11.8142 -5.0784 20 6 -0.9017 -13.0414 -5.4168 21 7 -1.1501 -13.7233 -4.2779 22 1 -1.4871 -14.6310 -4.2199 23 7 -0.8375 -12.8919 -3.1948 24 6 0.0068 -10.6352 -1.4777 25 6 0.4121 -9.5492 -0.7335 26 7 1.3102 -7.1390 0.7339 27 8 1.7150 -6.0480 1.0758 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 0.8894 30 1 3.1245 -3.7314 -0.8905 31 1 1.1818 -7.4192 -3.2609 32 1 0.4685 -9.3602 -4.5888 33 1 -0.1670 -11.0294 -5.7641 34 1 -1.0430 -13.4111 -6.4217 35 1 -0.3251 -11.5357 -0.9825 36 1 0.3985 -9.5986 0.3453 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761608309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:34 Heat of formation + Delta-G solvation = 143.460562 kcal Electronic energy + Delta-G solvation = -22563.685123 eV Core-core repulsion = 18950.025180 eV Total energy + Delta-G solvation = -3613.659943 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.62732 -42.09350 -40.15141 -37.02511 -35.01537 -34.58619 -33.48312 -32.28448 -30.88329 -30.77563 -29.90242 -27.67187 -26.15901 -24.63199 -23.81598 -22.56200 -21.87929 -20.95340 -19.93409 -19.28775 -19.15505 -18.67555 -17.37669 -16.87449 -16.58756 -16.41496 -16.04333 -15.66930 -15.53511 -15.05230 -14.78741 -14.61260 -14.46264 -14.34100 -14.25355 -13.85506 -13.45225 -13.18190 -13.04067 -12.84454 -12.76627 -12.71137 -12.44564 -12.10678 -12.04955 -11.63603 -11.39459 -11.12084 -10.87710 -10.40260 -10.07134 -9.80427 -9.26766 -8.74614 -8.36775 -6.16588 -0.64785 -0.01611 0.32959 0.87766 1.22422 1.40557 1.48180 1.53756 1.59960 1.77408 1.96255 1.97084 2.24385 2.37556 2.82384 2.85944 3.00218 3.26297 3.44705 3.70915 3.80211 3.91875 4.09022 4.18812 4.28395 4.35421 4.40016 4.53589 4.61950 4.68077 4.75887 4.83974 4.95978 5.00358 5.24857 5.35350 5.42678 5.44355 5.60162 5.76446 6.20246 6.44962 6.64241 6.98495 7.06010 8.72357 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029169 B = 0.001949 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.685112 B =14362.536590 C =14942.074521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.537 4.537 8 H 0.092 0.908 9 S -0.149 6.149 10 C -0.019 4.019 11 C 0.226 3.774 12 N -0.483 5.483 13 C 0.207 3.793 14 C -0.034 4.034 15 C -0.076 4.076 16 C -0.087 4.087 17 C -0.002 4.002 18 C 0.091 3.909 19 C -0.277 4.277 20 C 0.077 3.923 21 N -0.466 5.466 22 H 0.454 0.546 23 N -0.320 5.320 24 C -0.097 4.097 25 C -0.087 4.087 26 N -0.393 5.393 27 O 0.076 5.924 28 H 0.272 0.728 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.142 0.858 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.225 0.775 35 H 0.142 0.858 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 -25.506 -11.485 27.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.685 4.685 8 H 0.110 0.890 9 S 0.077 5.923 10 C -0.168 4.168 11 C 0.006 3.994 12 N -0.217 5.217 13 C -0.063 4.063 14 C -0.037 4.037 15 C -0.096 4.096 16 C -0.106 4.106 17 C -0.005 4.005 18 C -0.072 4.072 19 C -0.306 4.306 20 C -0.070 4.070 21 N -0.177 5.177 22 H 0.301 0.699 23 N -0.146 5.146 24 C -0.117 4.117 25 C -0.107 4.107 26 N -0.103 5.103 27 O 0.018 5.982 28 H 0.081 0.919 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.160 0.840 32 H 0.184 0.816 33 H 0.188 0.812 34 H 0.242 0.758 35 H 0.160 0.840 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.635 -27.029 -10.335 28.945 hybrid contribution 1.439 1.491 -0.215 2.084 sum 0.805 -25.538 -10.551 27.644 Atomic orbital electron populations 1.70145 1.07878 1.28874 1.47679 1.26088 0.95965 1.03209 0.93529 0.84991 0.77780 0.75617 0.79589 1.18650 1.20643 1.18587 1.23071 0.95520 0.90556 1.59354 0.88977 1.85297 1.09569 1.00259 1.97205 1.21819 1.01957 0.84103 1.08872 1.28067 0.94285 0.96807 0.80280 1.72017 1.18829 1.02313 1.28553 1.24341 0.99794 0.94405 0.87714 1.17628 1.03821 0.89373 0.92880 1.21253 0.97288 0.99721 0.91344 1.21284 0.97259 0.90368 1.01689 1.18173 0.98491 0.91667 0.92157 1.20801 1.00051 0.92337 0.94008 1.21922 1.14364 1.00714 0.93581 1.23268 0.97552 0.92280 0.93920 1.46427 1.52188 1.15725 1.03343 0.69912 1.77457 1.22603 1.03062 1.11462 1.21191 0.98991 0.98408 0.93083 1.21113 0.97316 0.91500 1.00741 1.74817 1.19434 1.00646 1.15386 1.85260 1.59310 1.17864 1.35756 0.91871 0.85538 0.85577 0.83986 0.81608 0.81234 0.75848 0.84029 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.03 13.22 21.65 0.29 -52.74 16 2 C 0.02 0.94 5.49 84.86 0.47 1.40 16 3 Si 1.00 41.53 29.55 68.60 2.03 43.56 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.54 -28.60 9.50 67.95 0.65 -27.95 16 8 H 0.09 4.51 7.80 -2.91 -0.02 4.48 16 9 S -0.15 -7.56 21.42 -56.49 -1.21 -8.77 16 10 C -0.02 -0.69 6.30 71.24 0.45 -0.25 16 11 C 0.23 8.47 7.75 88.36 0.68 9.15 16 12 N -0.48 -18.10 11.25 -302.47 -3.40 -21.50 16 13 C 0.21 7.32 7.79 137.25 1.07 8.39 16 14 C -0.03 -1.02 5.88 -20.01 -0.12 -1.14 16 15 C -0.08 -1.90 9.68 22.45 0.22 -1.68 16 16 C -0.09 -1.71 9.56 22.44 0.21 -1.49 16 17 C 0.00 -0.05 5.88 -20.01 -0.12 -0.16 16 18 C 0.09 1.80 6.99 42.50 0.30 2.09 16 19 C -0.28 -3.65 10.17 22.19 0.23 -3.43 16 20 C 0.08 0.60 11.97 83.47 1.00 1.60 16 21 N -0.47 -5.16 7.35 -57.67 -0.42 -5.59 16 22 H 0.45 1.89 8.96 -213.34 -1.91 -0.02 16 23 N -0.32 -6.41 12.36 -48.18 -0.60 -7.00 16 24 C -0.10 -2.25 9.67 22.44 0.22 -2.03 16 25 C -0.09 -2.27 9.68 22.44 0.22 -2.05 16 26 N -0.39 -14.41 11.85 -59.08 -0.70 -15.11 16 27 O 0.08 2.82 11.29 74.58 0.84 3.66 16 28 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.13 4.16 8.14 -2.39 -0.02 4.14 16 30 H 0.13 4.39 8.14 -2.39 -0.02 4.37 16 31 H 0.14 3.51 7.86 -2.91 -0.02 3.49 16 32 H 0.17 2.15 7.02 -2.91 -0.02 2.13 16 33 H 0.17 1.48 7.32 -2.91 -0.02 1.46 16 34 H 0.23 -0.47 8.06 -2.91 -0.02 -0.49 16 35 H 0.14 2.99 7.84 -2.91 -0.02 2.97 16 36 H 0.13 3.40 7.86 -2.91 -0.02 3.37 16 Total: -1.00 -72.68 343.25 1.53 -71.15 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -0.76 Total: 9.88 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 5.47 Total: -17.54 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -4.83 Total: -101.93 kcal Atomic # 8 Polarization: 2.82 SS G_CDS: 0.84 Total: 3.66 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -1.21 Total: -8.77 kcal Total: -72.68 1.53 -71.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761608309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.611 kcal (2) G-P(sol) polarization free energy of solvation -72.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds