Wall clock time and date at job start Tue Mar 31 2020 15:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.80997 * 109.47713 * 2 1 4 4 C 1.76195 * 100.00145 * 180.02562 * 3 2 1 5 5 C 1.38984 * 120.18583 * 0.02562 * 4 3 2 6 6 C 1.38040 * 120.05592 * 180.02562 * 5 4 3 7 7 Cl 1.73598 * 119.79345 * 179.97438 * 6 5 4 8 8 C 1.38831 * 120.42250 * 359.97438 * 6 5 4 9 9 C 1.37650 * 120.35815 * 359.97438 * 8 6 5 10 10 C 1.39845 * 119.94491 * 0.02562 * 9 8 6 11 11 C 1.47173 * 120.20824 * 180.25280 * 10 9 8 12 12 O 1.21546 * 119.99955 * 179.72393 * 11 10 9 13 13 O 1.34789 * 119.99942 * 359.72315 * 11 10 9 14 14 C 1.45205 * 116.99653 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46680 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.47055 * 179.97438 * 15 14 13 17 17 C 1.50692 * 109.47070 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00552 * 359.97438 * 17 16 15 19 19 C 1.37888 * 119.99907 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99799 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99761 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47545 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.46749 * 119.99749 * 21 19 17 24 24 H 1.48500 * 109.46751 * 239.99412 * 21 19 17 25 25 H 1.08993 * 109.47662 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46996 * 300.00152 * 1 2 3 27 27 H 1.09004 * 109.47156 * 59.99356 * 1 2 3 28 28 H 1.09008 * 109.46996 * 239.99847 * 2 1 3 29 29 H 1.09004 * 109.47156 * 120.00644 * 2 1 3 30 30 H 1.08002 * 119.97127 * 359.97438 * 5 4 3 31 31 H 1.07993 * 119.82044 * 180.02562 * 8 6 5 32 32 H 1.08003 * 120.02242 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.46737 * 299.99700 * 14 13 11 34 34 H 1.09002 * 109.46990 * 60.00061 * 14 13 11 35 35 H 1.08992 * 109.47488 * 299.99672 * 15 14 13 36 36 H 1.09002 * 109.47311 * 60.00317 * 15 14 13 37 37 H 1.09005 * 109.47022 * 300.00131 * 16 15 14 38 38 H 1.08994 * 109.46881 * 59.99768 * 16 15 14 39 39 H 0.97003 * 119.99749 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1335 1.7064 0.0000 4 6 3.8714 1.4163 -0.0008 5 6 4.3629 0.1163 -0.0017 6 6 5.7249 -0.1079 -0.0018 7 17 6.3314 -1.7345 -0.0023 8 6 6.6130 0.9592 -0.0015 9 6 6.1451 2.2538 -0.0016 10 6 4.7682 2.4983 -0.0015 11 6 4.2615 3.8801 -0.0073 12 8 3.0640 4.0883 -0.0123 13 8 5.1255 4.9147 -0.0070 14 6 4.5548 6.2499 -0.0123 15 6 5.6809 7.2857 -0.0105 16 6 5.0797 8.6926 -0.0167 17 6 6.1888 9.7128 -0.0156 18 1 7.2195 9.3901 -0.0105 19 6 5.8879 11.0584 -0.0200 20 7 4.6328 11.4515 -0.0257 21 14 7.2628 12.3229 -0.0178 22 1 8.5749 11.6276 -0.0106 23 1 7.1577 13.1703 -1.2329 24 1 7.1485 13.1763 1.1921 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.6785 -0.7192 -0.0016 31 1 7.6767 0.7727 -0.0019 32 1 6.8408 3.0799 -0.0018 33 1 3.9426 6.3798 -0.9047 34 1 3.9366 6.3843 0.8753 35 1 6.2928 7.1556 0.8821 36 1 6.2995 7.1514 -0.8979 37 1 4.4680 8.8224 -0.9095 38 1 4.4609 8.8272 0.8704 39 1 4.4211 12.3981 -0.0291 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764619153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:14 Heat of formation + Delta-G solvation = -85.118265 kcal Electronic energy + Delta-G solvation = -21966.703511 eV Core-core repulsion = 18411.946389 eV Total energy + Delta-G solvation = -3554.757122 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.56353 -39.10414 -36.96918 -36.44353 -34.01611 -33.40721 -31.94629 -31.61163 -31.28758 -27.20039 -25.06614 -24.00770 -23.40506 -22.86383 -20.86005 -20.34760 -18.41644 -17.65720 -16.88237 -16.35965 -16.25010 -16.02584 -15.64411 -15.25397 -14.97851 -14.61442 -14.47110 -14.32824 -13.76244 -13.53447 -12.82694 -12.68250 -12.40648 -12.37373 -12.19187 -12.00401 -11.92500 -11.78435 -11.76206 -11.35854 -11.07466 -10.99734 -10.66153 -10.57761 -10.43125 -10.14881 -9.80433 -9.74617 -9.49559 -9.33214 -9.15929 -8.39822 -7.74479 -6.04380 -4.07337 0.14846 0.69043 1.20603 1.54865 2.10004 2.31980 2.76982 3.24827 3.29646 3.37160 3.41309 4.23394 4.41965 4.47329 4.50000 4.57832 4.67971 4.76348 4.86300 5.00977 5.26298 5.31764 5.34153 5.39633 5.45474 5.56312 5.60107 5.67388 5.70675 5.72377 5.99469 6.11544 6.42023 6.52193 6.78969 6.96144 7.59537 7.70201 7.80661 7.94043 8.34896 8.99153 9.57039 11.07100 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016710 B = 0.002324 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.259246 B =12043.972715 C =13682.868694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.174 4.174 3 S 0.022 5.978 4 C -0.034 4.034 5 C -0.144 4.144 6 C 0.017 3.983 7 Cl -0.061 7.061 8 C -0.136 4.136 9 C -0.025 4.025 10 C -0.114 4.114 11 C 0.498 3.502 12 O -0.483 6.483 13 O -0.350 6.350 14 C 0.069 3.931 15 C -0.109 4.109 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.156 0.844 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 -29.144 0.063 29.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.322 4.322 3 S 0.271 5.729 4 C -0.149 4.149 5 C -0.170 4.170 6 C -0.012 4.012 7 Cl -0.031 7.031 8 C -0.158 4.158 9 C -0.045 4.045 10 C -0.122 4.122 11 C 0.342 3.658 12 O -0.373 6.373 13 O -0.267 6.267 14 C -0.003 4.003 15 C -0.146 4.146 16 C -0.013 4.013 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.174 0.826 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.087 -27.999 0.062 28.169 hybrid contribution 1.444 -0.526 0.001 1.536 sum -1.643 -28.526 0.062 28.573 Atomic orbital electron populations 1.21449 0.91768 1.02751 1.03373 1.24123 1.01462 1.01220 1.05387 1.87367 0.92867 1.04579 1.88128 1.22149 0.99529 0.94252 0.99012 1.20964 0.94341 0.95652 1.06006 1.21062 0.93365 0.86358 1.00390 1.98394 1.87945 1.20285 1.96524 1.21055 1.00351 0.90850 1.03546 1.21487 0.93900 0.97250 0.91814 1.18865 0.93686 0.89587 1.10086 1.20790 0.84907 0.86049 0.74067 1.90778 1.16281 1.84860 1.45333 1.86540 1.40102 1.16738 1.83313 1.23571 0.98294 0.76059 1.02397 1.21774 0.96214 0.94643 1.02001 1.19056 0.96570 0.87984 0.97730 1.21202 0.92946 0.90846 1.50895 0.92374 1.25038 0.95544 0.98724 0.95211 1.69977 1.17100 1.15650 1.50598 0.86494 0.82259 0.81394 0.77610 1.19671 1.20969 1.20975 0.91093 0.91539 0.91530 0.89458 0.89463 0.83783 0.83739 0.82618 0.91276 0.91283 0.92090 0.92093 0.96196 0.96197 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 9.92 37.16 0.37 -0.51 16 2 C -0.17 -1.31 4.89 37.16 0.18 -1.13 16 3 S 0.02 0.26 18.97 -107.50 -2.04 -1.78 16 4 C -0.03 -0.40 6.16 -38.44 -0.24 -0.63 16 5 C -0.14 -1.34 8.95 -39.38 -0.35 -1.69 16 6 C 0.02 0.15 6.32 -39.43 -0.25 -0.10 16 7 Cl -0.06 -0.47 28.94 -51.86 -1.50 -1.97 16 8 C -0.14 -1.16 9.80 -39.58 -0.39 -1.55 16 9 C -0.02 -0.25 9.61 -39.20 -0.38 -0.63 16 10 C -0.11 -1.44 5.89 -104.80 -0.62 -2.06 16 11 C 0.50 7.80 7.87 34.36 0.27 8.07 16 12 O -0.48 -8.50 13.56 -19.30 -0.26 -8.77 16 13 O -0.35 -5.74 9.47 -40.73 -0.39 -6.12 16 14 C 0.07 1.26 5.48 37.16 0.20 1.46 16 15 C -0.11 -2.21 5.53 -26.73 -0.15 -2.36 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 21 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.58 7.54 -51.91 -0.39 0.18 16 29 H 0.09 0.57 7.54 -51.91 -0.39 0.18 16 30 H 0.14 1.06 5.49 -52.49 -0.29 0.77 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.16 1.43 7.61 -52.48 -0.40 1.03 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -30.99 360.58 -10.17 -41.16 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -5.24 Total: -4.38 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -1.89 Total: -14.02 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.65 Total: -14.89 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -2.04 Total: -1.78 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.99 -10.17 -41.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764619153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.962 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds