Wall clock time and date at job start Tue Mar 31 2020 15:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.80997 * 109.47713 * 2 1 4 4 C 1.76195 * 100.00145 * 180.02562 * 3 2 1 5 5 C 1.38984 * 120.18583 * 0.02562 * 4 3 2 6 6 C 1.38040 * 120.05592 * 180.02562 * 5 4 3 7 7 Cl 1.73598 * 119.79345 * 179.97438 * 6 5 4 8 8 C 1.38831 * 120.42250 * 359.97438 * 6 5 4 9 9 C 1.37650 * 120.35815 * 359.97438 * 8 6 5 10 10 C 1.39845 * 119.94491 * 0.02562 * 9 8 6 11 11 C 1.47173 * 120.20824 * 180.25280 * 10 9 8 12 12 O 1.21546 * 119.99955 * 179.72393 * 11 10 9 13 13 O 1.34789 * 119.99942 * 359.72315 * 11 10 9 14 14 C 1.45205 * 116.99653 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46680 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.47055 * 179.97438 * 15 14 13 17 17 C 1.50692 * 109.47070 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00552 * 359.97438 * 17 16 15 19 19 C 1.37888 * 119.99907 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99799 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99761 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47545 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.46749 * 119.99749 * 21 19 17 24 24 H 1.48500 * 109.46751 * 239.99412 * 21 19 17 25 25 H 1.08993 * 109.47662 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46996 * 300.00152 * 1 2 3 27 27 H 1.09004 * 109.47156 * 59.99356 * 1 2 3 28 28 H 1.09008 * 109.46996 * 239.99847 * 2 1 3 29 29 H 1.09004 * 109.47156 * 120.00644 * 2 1 3 30 30 H 1.08002 * 119.97127 * 359.97438 * 5 4 3 31 31 H 1.07993 * 119.82044 * 180.02562 * 8 6 5 32 32 H 1.08003 * 120.02242 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.46737 * 299.99700 * 14 13 11 34 34 H 1.09002 * 109.46990 * 60.00061 * 14 13 11 35 35 H 1.08992 * 109.47488 * 299.99672 * 15 14 13 36 36 H 1.09002 * 109.47311 * 60.00317 * 15 14 13 37 37 H 1.09005 * 109.47022 * 300.00131 * 16 15 14 38 38 H 1.08994 * 109.46881 * 59.99768 * 16 15 14 39 39 H 0.97003 * 119.99749 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1335 1.7064 0.0000 4 6 3.8714 1.4163 -0.0008 5 6 4.3629 0.1163 -0.0017 6 6 5.7249 -0.1079 -0.0018 7 17 6.3314 -1.7345 -0.0023 8 6 6.6130 0.9592 -0.0015 9 6 6.1451 2.2538 -0.0016 10 6 4.7682 2.4983 -0.0015 11 6 4.2615 3.8801 -0.0073 12 8 3.0640 4.0883 -0.0123 13 8 5.1255 4.9147 -0.0070 14 6 4.5548 6.2499 -0.0123 15 6 5.6809 7.2857 -0.0105 16 6 5.0797 8.6926 -0.0167 17 6 6.1888 9.7128 -0.0156 18 1 7.2195 9.3901 -0.0105 19 6 5.8879 11.0584 -0.0200 20 7 4.6328 11.4515 -0.0257 21 14 7.2628 12.3229 -0.0178 22 1 8.5749 11.6276 -0.0106 23 1 7.1577 13.1703 -1.2329 24 1 7.1485 13.1763 1.1921 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.6785 -0.7192 -0.0016 31 1 7.6767 0.7727 -0.0019 32 1 6.8408 3.0799 -0.0018 33 1 3.9426 6.3798 -0.9047 34 1 3.9366 6.3843 0.8753 35 1 6.2928 7.1556 0.8821 36 1 6.2995 7.1514 -0.8979 37 1 4.4680 8.8224 -0.9095 38 1 4.4609 8.8272 0.8704 39 1 4.4211 12.3981 -0.0291 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764619153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:13 Heat of formation + Delta-G solvation = -99.479509 kcal Electronic energy + Delta-G solvation = -21967.326262 eV Core-core repulsion = 18411.946389 eV Total energy + Delta-G solvation = -3555.379872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.70602 -40.01034 -37.91539 -37.52032 -35.93843 -34.02837 -33.71361 -32.37854 -32.30607 -29.03501 -26.17503 -25.13011 -24.18627 -24.16109 -22.17485 -21.88066 -19.36909 -18.79476 -18.43255 -17.72940 -17.70883 -16.86661 -16.60423 -16.42843 -15.94187 -15.69013 -15.63553 -15.41995 -14.79156 -14.69676 -14.17493 -13.85816 -13.82583 -13.58018 -13.30165 -13.04038 -12.90430 -12.80117 -12.52716 -12.51122 -12.37649 -12.37637 -12.20145 -12.09261 -11.88371 -11.54800 -11.42366 -11.24097 -10.89668 -10.63824 -10.57589 -10.11159 -8.61906 -8.21447 -6.32770 -0.72589 -0.05278 0.40712 0.85721 1.28224 1.31363 1.42229 1.42301 1.55624 1.61284 2.36848 2.41832 3.12668 3.43614 3.55664 3.84712 3.95780 3.97201 4.00367 4.04019 4.05490 4.08807 4.39538 4.45398 4.56570 4.60227 4.80354 4.83136 4.85820 4.87384 4.95816 4.98628 5.08097 5.19706 5.34314 5.38548 5.50428 5.64390 5.80825 6.19396 6.57217 6.83552 7.36775 8.91059 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016710 B = 0.002324 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.259246 B =12043.972715 C =13682.868694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.154 4.154 3 S -0.050 6.050 4 C -0.036 4.036 5 C -0.140 4.140 6 C 0.020 3.980 7 Cl -0.044 7.044 8 C -0.127 4.127 9 C -0.024 4.024 10 C -0.139 4.139 11 C 0.494 3.506 12 O -0.509 6.509 13 O -0.348 6.348 14 C 0.080 3.920 15 C -0.092 4.092 16 C 0.025 3.975 17 C -0.540 4.540 18 H 0.066 0.934 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.969 3.031 22 H -0.259 1.259 23 H -0.279 1.279 24 H -0.279 1.279 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.165 0.835 31 H 0.172 0.828 32 H 0.164 0.836 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.069 0.931 37 H -0.004 1.004 38 H -0.004 1.004 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 -31.511 0.071 31.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.302 4.302 3 S 0.198 5.802 4 C -0.151 4.151 5 C -0.165 4.165 6 C -0.009 4.009 7 Cl -0.014 7.014 8 C -0.149 4.149 9 C -0.043 4.043 10 C -0.147 4.147 11 C 0.340 3.660 12 O -0.401 6.401 13 O -0.264 6.264 14 C 0.007 3.993 15 C -0.130 4.130 16 C -0.012 4.012 17 C -0.578 4.578 18 H 0.084 0.916 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.793 3.207 22 H -0.183 1.183 23 H -0.204 1.204 24 H -0.205 1.205 25 H 0.114 0.886 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.182 0.818 31 H 0.190 0.810 32 H 0.182 0.818 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.107 -30.393 0.069 30.413 hybrid contribution 0.799 0.020 -0.002 0.799 sum -0.308 -30.373 0.068 30.375 Atomic orbital electron populations 1.21496 0.91063 1.04055 1.02776 1.24128 1.01806 0.97565 1.06697 1.87561 0.94613 1.09543 1.88460 1.22140 0.98637 0.94826 0.99457 1.21166 0.95053 0.95167 1.05077 1.21205 0.93278 0.87272 0.99147 1.98409 1.87690 1.19020 1.96317 1.21336 1.01728 0.89886 1.01922 1.21610 0.92824 0.98460 0.91421 1.18829 0.95078 0.87910 1.12902 1.21389 0.84591 0.86817 0.73240 1.90786 1.17295 1.85421 1.46561 1.86510 1.40116 1.16075 1.83719 1.23173 0.97187 0.77040 1.01901 1.21454 0.96494 0.92319 1.02720 1.18938 0.95788 0.91014 0.95436 1.21650 0.93797 0.91762 1.50625 0.91559 1.26026 0.98172 1.01185 0.94661 1.70112 1.19453 1.16304 1.51590 0.85336 0.79255 0.78366 0.77710 1.18261 1.20444 1.20456 0.88602 0.92201 0.92197 0.88042 0.88041 0.81790 0.81006 0.81803 0.91867 0.91875 0.91273 0.91277 0.98539 0.98539 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.92 71.98 0.71 -0.88 16 2 C -0.15 -2.08 4.89 71.98 0.35 -1.73 16 3 S -0.05 -1.20 18.97 -56.49 -1.07 -2.27 16 4 C -0.04 -0.80 6.16 23.01 0.14 -0.66 16 5 C -0.14 -2.29 8.95 22.40 0.20 -2.09 16 6 C 0.02 0.30 6.32 22.36 0.14 0.44 16 7 Cl -0.04 -0.53 28.94 -2.72 -0.08 -0.61 16 8 C -0.13 -1.83 9.80 22.27 0.22 -1.61 16 9 C -0.02 -0.45 9.61 22.52 0.22 -0.23 16 10 C -0.14 -3.49 5.89 -19.98 -0.12 -3.61 16 11 C 0.49 15.92 7.87 70.17 0.55 16.47 16 12 O -0.51 -18.86 13.56 19.69 0.27 -18.59 16 13 O -0.35 -11.53 9.47 -57.00 -0.54 -12.07 16 14 C 0.08 3.01 5.48 71.98 0.39 3.40 16 15 C -0.09 -3.80 5.53 30.60 0.17 -3.63 16 16 C 0.03 1.34 4.97 29.85 0.15 1.49 16 17 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 18 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 19 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 20 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 21 Si 0.97 43.98 29.54 68.60 2.03 46.00 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 25 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.10 1.09 7.54 -2.39 -0.02 1.08 16 29 H 0.10 1.09 7.54 -2.39 -0.02 1.08 16 30 H 0.16 1.93 5.49 -2.91 -0.02 1.91 16 31 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 32 H 0.16 2.76 7.61 -2.91 -0.02 2.73 16 33 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 38 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.26 15.09 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -68.27 360.58 5.77 -62.51 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 1.06 Total: 4.36 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 3.83 Total: -22.58 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.28 Total: -56.75 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.27 Total: -30.67 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -1.07 Total: -2.27 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Total: -68.27 5.77 -62.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764619153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.974 kcal (2) G-P(sol) polarization free energy of solvation -68.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds