Wall clock time and date at job start Tue Mar 31 2020 15:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99853 * 2 1 4 4 H 1.48501 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46801 * 299.99494 * 3 2 1 6 6 H 1.48501 * 109.47159 * 59.99447 * 3 2 1 7 7 C 1.37879 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99398 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00226 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47190 * 179.97438 * 9 7 2 11 11 O 1.45197 * 109.47354 * 179.97438 * 10 9 7 12 12 C 1.34754 * 117.00360 * 179.97438 * 11 10 9 13 13 O 1.21517 * 119.99673 * 0.02562 * 12 11 10 14 14 C 1.47431 * 120.00345 * 180.02562 * 12 11 10 15 15 C 1.41826 * 120.08714 * 359.97438 * 14 12 11 16 16 C 1.35582 * 119.54297 * 180.02562 * 15 14 12 17 17 C 1.41170 * 119.65219 * 359.93860 * 16 15 14 18 18 N 1.32432 * 132.03097 * 180.02562 * 17 16 15 19 19 C 1.33588 * 109.23833 * 180.02562 * 18 17 16 20 20 C 1.50703 * 125.67000 * 179.97438 * 19 18 17 21 21 F 1.39905 * 109.47157 * 5.02435 * 20 19 18 22 22 F 1.39900 * 109.47159 * 245.02735 * 20 19 18 23 23 F 1.39897 * 109.47274 * 125.02427 * 20 19 18 24 24 C 1.34987 * 108.66101 * 0.24110 * 19 18 17 25 25 N 1.37018 * 107.13492 * 359.61574 * 24 19 18 26 26 C 1.35912 * 132.37990 * 180.12218 * 25 24 19 27 27 H 0.96996 * 119.99896 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47496 * 59.99568 * 9 7 2 29 29 H 1.09000 * 109.47250 * 299.99082 * 9 7 2 30 30 H 1.09002 * 109.46929 * 59.99619 * 10 9 7 31 31 H 1.08999 * 109.47331 * 299.99761 * 10 9 7 32 32 H 1.08002 * 120.22766 * 0.02562 * 15 14 12 33 33 H 1.08002 * 120.17197 * 180.02562 * 16 15 14 34 34 H 1.08002 * 126.43190 * 179.71739 * 24 19 18 35 35 H 1.08005 * 119.81822 * 0.28224 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5194 -4.9195 0.0011 12 6 2.2533 -6.0497 0.0007 13 8 3.4668 -5.9860 0.0003 14 6 1.5840 -7.3633 0.0007 15 6 0.1678 -7.4398 0.0017 16 6 -0.4362 -8.6536 0.0022 17 6 0.3511 -9.8254 0.0004 18 7 0.0290 -11.1100 0.0000 19 6 1.1454 -11.8437 -0.0014 20 6 1.2073 -13.3494 -0.0017 21 9 -0.0865 -13.8694 -0.1159 22 9 1.7842 -13.7927 1.1932 23 9 1.9816 -13.7841 -1.0828 24 6 2.2087 -11.0121 0.0035 25 7 1.7201 -9.7320 -0.0007 26 6 2.3315 -8.5182 -0.0010 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5568 0.8904 30 1 2.8720 -3.6042 0.8905 31 1 2.8720 -3.6044 -0.8894 32 1 -0.4254 -6.5372 0.0021 33 1 -1.5139 -8.7236 0.0026 34 1 3.2492 -11.3015 0.0081 35 1 3.4100 -8.4600 -0.0018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770422901.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:02 Heat of formation + Delta-G solvation = -164.875150 kcal Electronic energy + Delta-G solvation = -26015.501436 eV Core-core repulsion = 21371.568690 eV Total energy + Delta-G solvation = -4643.932745 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.22571 -48.74876 -48.71627 -44.31578 -41.53719 -38.71998 -37.65195 -35.46887 -35.13608 -32.77600 -32.07280 -30.53920 -28.17921 -27.02838 -25.29660 -24.44676 -23.25568 -22.75802 -22.24191 -20.05079 -19.62770 -19.34215 -19.22880 -18.51513 -17.95419 -17.72754 -17.69431 -17.33794 -17.21191 -16.49776 -15.85659 -15.84015 -15.60169 -15.46466 -15.14602 -15.12506 -14.86705 -14.85993 -14.79654 -14.37642 -14.18424 -13.62534 -13.34884 -13.14248 -13.08276 -12.89001 -12.62807 -12.57117 -12.38132 -12.00554 -11.68411 -11.58882 -11.48656 -11.37731 -10.60078 -10.46512 -9.25591 -8.25869 -6.38003 -0.95813 -0.22656 0.77133 0.81231 1.39858 1.42627 1.43427 1.44096 1.56102 1.72016 2.24984 2.39760 2.41171 2.67565 3.09419 3.21824 3.29399 3.31112 3.39736 3.50068 3.64927 3.92052 4.12151 4.26173 4.26977 4.49747 4.70164 4.77381 4.79155 4.90721 5.15388 5.21971 5.47522 5.50551 5.50686 5.75219 6.08224 6.23480 6.54173 6.76464 7.31812 8.86612 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.043892 B = 0.001908 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.783596 B =14668.260986 C =15120.943845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.029 3.971 10 C 0.092 3.908 11 O -0.351 6.351 12 C 0.518 3.482 13 O -0.529 6.529 14 C -0.140 4.140 15 C -0.051 4.051 16 C -0.083 4.083 17 C 0.239 3.761 18 N -0.483 5.483 19 C -0.060 4.060 20 C 0.562 3.438 21 F -0.173 7.173 22 F -0.167 7.167 23 F -0.165 7.165 24 C -0.001 4.001 25 N -0.370 5.370 26 C 0.157 3.843 27 H 0.267 0.733 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.171 0.829 33 H 0.185 0.815 34 H 0.241 0.759 35 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -25.256 0.001 25.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.084 0.916 9 C -0.008 4.008 10 C 0.019 3.981 11 O -0.267 6.267 12 C 0.363 3.637 13 O -0.421 6.421 14 C -0.144 4.144 15 C -0.074 4.074 16 C -0.103 4.103 17 C -0.007 4.007 18 N -0.202 5.202 19 C -0.190 4.190 20 C 0.506 3.494 21 F -0.154 7.154 22 F -0.149 7.149 23 F -0.147 7.147 24 C -0.133 4.133 25 N -0.041 5.041 26 C 0.033 3.967 27 H 0.076 0.924 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.189 0.811 33 H 0.202 0.798 34 H 0.257 0.743 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.116 -25.526 -0.001 25.715 hybrid contribution 0.946 1.076 0.000 1.433 sum 4.061 -24.449 -0.001 24.784 Atomic orbital electron populations 1.70087 1.07708 1.28130 1.50561 1.25916 0.95804 1.03276 0.94279 0.85327 0.79018 0.78409 0.77862 1.18557 1.20293 1.20303 1.21407 0.93763 0.91215 1.52116 0.91586 1.18997 0.94420 0.90408 0.96993 1.23269 0.95053 0.78179 1.01569 1.86539 1.41814 1.15414 1.82897 1.20748 0.85132 0.85261 0.72521 1.90841 1.15508 1.88480 1.47223 1.18704 0.94892 0.89266 1.11550 1.21429 0.92131 0.99525 0.94342 1.20431 1.01827 0.86211 1.01839 1.21422 0.81291 0.93745 1.04220 1.70476 1.27652 0.99899 1.22157 1.20632 0.91607 0.93924 1.12871 1.16758 0.73874 0.84707 0.74025 1.93218 1.38309 1.88177 1.95689 1.93249 1.84582 1.90556 1.46481 1.93247 1.75251 1.90786 1.55388 1.22944 1.02038 0.79279 1.09060 1.42869 1.09025 1.06175 1.46048 1.22197 1.00784 0.80334 0.93387 0.92415 0.97233 0.97226 0.91630 0.91620 0.81138 0.79821 0.74293 0.77261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.42 13.29 21.45 0.28 -53.13 16 2 C 0.01 0.34 5.46 84.65 0.46 0.81 16 3 Si 0.97 42.06 29.54 68.60 2.03 44.09 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -29.37 9.11 25.60 0.23 -29.14 16 8 H 0.07 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.44 5.35 29.85 0.16 1.60 16 10 C 0.09 3.69 5.41 71.98 0.39 4.08 16 11 O -0.35 -12.01 9.50 -56.65 -0.54 -12.55 16 12 C 0.52 14.86 7.89 70.24 0.55 15.42 16 13 O -0.53 -17.04 16.09 19.78 0.32 -16.72 16 14 C -0.14 -2.92 5.87 -20.13 -0.12 -3.04 16 15 C -0.05 -0.93 9.62 22.54 0.22 -0.71 16 16 C -0.08 -1.43 10.08 22.37 0.23 -1.20 16 17 C 0.24 4.89 7.80 134.15 1.05 5.94 16 18 N -0.48 -11.26 11.09 -182.22 -2.02 -13.28 16 19 C -0.06 -1.14 6.35 41.54 0.26 -0.88 16 20 C 0.56 9.96 3.48 71.24 0.25 10.21 16 21 F -0.17 -3.67 17.14 44.97 0.77 -2.90 16 22 F -0.17 -2.80 17.30 44.97 0.78 -2.02 16 23 F -0.17 -2.67 17.28 44.97 0.78 -1.89 16 24 C 0.00 -0.02 11.63 83.13 0.97 0.95 16 25 N -0.37 -6.29 2.93 -350.14 -1.03 -7.32 16 26 C 0.16 2.55 10.54 83.90 0.88 3.44 16 27 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 2.57 8.14 -2.39 -0.02 2.56 16 31 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.17 2.99 7.65 -2.91 -0.02 2.97 16 33 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.24 1.15 8.06 -2.91 -0.02 1.13 16 35 H 0.21 2.42 7.59 -2.91 -0.02 2.40 16 Total: -1.00 -66.70 334.03 8.06 -58.64 By element: Atomic # 1 Polarization: -1.54 SS G_CDS: 1.16 Total: -0.38 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 5.53 Total: 7.46 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -2.76 Total: -73.73 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.22 Total: -29.27 kcal Atomic # 9 Polarization: -9.14 SS G_CDS: 2.33 Total: -6.81 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -66.70 8.06 -58.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770422901.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.236 kcal (2) G-P(sol) polarization free energy of solvation -66.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds