Wall clock time and date at job start Tue Mar 31 2020 14:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46910 * 2 1 4 4 S 1.75470 * 124.59701 * 269.97848 * 3 2 1 5 5 C 1.70445 * 92.52912 * 179.97438 * 4 3 2 6 6 N 1.38656 * 124.65269 * 179.97438 * 5 4 3 7 7 C 1.34774 * 120.00405 * 0.02562 * 6 5 4 8 8 O 1.21283 * 119.99885 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00481 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.47411 * 180.02562 * 9 7 6 11 11 C 1.76204 * 100.00154 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99657 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00274 * 179.97438 * 11 10 9 14 14 N 1.31639 * 119.99427 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00279 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46588 * 60.00403 * 15 13 11 17 17 H 1.48496 * 109.47011 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47227 * 300.00617 * 15 13 11 19 19 C 1.37073 * 110.69207 * 359.97438 * 5 4 3 20 20 C 1.46616 * 123.59785 * 179.97438 * 19 5 4 21 21 N 1.34777 * 120.00281 * 270.02762 * 20 19 5 22 22 O 1.21712 * 119.99854 * 90.02185 * 20 19 5 23 23 C 1.32542 * 124.59881 * 90.27636 * 3 2 1 24 24 C 1.50707 * 123.41803 * 359.96578 * 23 3 2 25 25 H 1.09004 * 109.47279 * 60.00367 * 1 2 3 26 26 H 1.09004 * 109.47263 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47417 * 299.99965 * 1 2 3 28 28 H 1.09002 * 109.47204 * 240.00424 * 2 1 3 29 29 H 1.08992 * 109.47495 * 120.00033 * 2 1 3 30 30 H 0.97000 * 120.00407 * 180.02562 * 6 5 4 31 31 H 1.09006 * 109.47251 * 299.99914 * 9 7 6 32 32 H 1.09001 * 109.47322 * 59.99772 * 9 7 6 33 33 H 0.97005 * 119.99314 * 179.97438 * 14 13 11 34 34 H 0.97001 * 120.00485 * 180.02562 * 21 20 19 35 35 H 0.97005 * 119.99790 * 359.71972 * 21 20 19 36 36 H 1.09003 * 109.47064 * 270.26527 * 24 23 3 37 37 H 1.09004 * 109.46749 * 30.25688 * 24 23 3 38 38 H 1.08996 * 109.47188 * 150.25695 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 16 2.3648 2.3600 -1.4444 5 6 2.8452 3.7222 -0.5395 6 7 3.2701 4.9229 -1.0875 7 6 3.3234 5.0714 -2.4259 8 8 2.9994 4.1549 -3.1512 9 6 3.7858 6.3762 -3.0215 10 16 3.7459 6.2629 -4.8275 11 6 4.3166 7.8760 -5.2481 12 1 4.5662 8.5807 -4.4686 13 6 4.4463 8.2407 -6.5810 14 7 4.1425 7.3816 -7.5309 15 14 5.0507 9.9511 -7.0268 16 1 6.4094 10.1581 -6.4643 17 1 5.0998 10.0891 -8.5045 18 1 4.1229 10.9658 -6.4658 19 6 2.7538 3.4677 0.8043 20 6 3.0989 4.4458 1.8406 21 7 4.3580 4.5064 2.3176 22 8 2.2484 5.2031 2.2700 23 6 2.2880 2.1286 1.0910 24 6 2.1057 1.5948 2.4885 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.5289 5.6561 -0.5075 31 1 3.1258 7.1794 -2.6936 32 1 4.8037 6.5853 -2.6926 33 1 4.2328 7.6366 -8.4625 34 1 4.5863 5.1533 3.0034 35 1 5.0350 3.9002 1.9782 36 1 1.0915 1.8049 2.8282 37 1 2.2737 0.5178 2.4907 38 1 2.8198 2.0753 3.1571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770711571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:14 Heat of formation + Delta-G solvation = -62.045763 kcal Electronic energy + Delta-G solvation = -22586.974396 eV Core-core repulsion = 19067.554230 eV Total energy + Delta-G solvation = -3519.420166 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.43229 -39.51528 -37.69330 -35.39482 -33.80611 -33.01535 -32.52562 -30.54996 -29.08536 -27.30060 -25.61485 -24.23298 -23.48812 -21.23816 -20.49211 -19.10681 -18.12699 -18.00385 -17.32983 -16.98438 -16.35611 -15.71665 -15.60009 -14.88711 -14.58814 -14.40504 -14.29980 -14.25552 -13.84560 -13.65797 -13.36013 -12.94110 -12.78569 -12.68617 -12.42169 -12.32211 -11.97285 -11.39908 -11.32476 -11.17311 -11.10194 -10.89916 -10.86159 -10.45288 -10.21892 -9.95201 -9.92795 -9.61693 -9.14970 -8.42313 -8.26454 -7.97968 -6.64339 -6.31414 -4.04249 0.91154 1.34133 2.01006 2.14153 2.43740 2.64387 2.74147 3.18221 3.19560 3.23817 3.42251 3.49702 4.09891 4.61174 4.76879 4.83018 4.91045 5.01879 5.04326 5.16696 5.20719 5.38738 5.43112 5.47828 5.55250 5.62106 5.64678 5.73148 5.79863 5.89232 5.97577 6.07410 6.27717 6.42122 6.51921 7.00272 7.09138 7.50335 7.94886 8.04520 8.25307 9.14094 10.75925 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019437 B = 0.002929 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.224895 B = 9556.741156 C =10750.316802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.044 4.044 3 C -0.259 4.259 4 S 0.305 5.695 5 C 0.059 3.941 6 N -0.638 5.638 7 C 0.526 3.474 8 O -0.476 6.476 9 C -0.152 4.152 10 S -0.050 6.050 11 C -0.540 4.540 12 H 0.074 0.926 13 C 0.075 3.925 14 N -0.867 5.867 15 Si 0.921 3.079 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.273 1.273 19 C -0.233 4.233 20 C 0.594 3.406 21 N -0.849 5.849 22 O -0.536 6.536 23 C -0.050 4.050 24 C -0.092 4.092 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.416 0.584 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.270 0.730 34 H 0.401 0.599 35 H 0.404 0.596 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.621 -12.909 19.653 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.083 4.083 3 C -0.376 4.376 4 S 0.569 5.431 5 C -0.160 4.160 6 N -0.283 5.283 7 C 0.313 3.687 8 O -0.349 6.349 9 C -0.302 4.302 10 S 0.176 5.824 11 C -0.688 4.688 12 H 0.092 0.908 13 C -0.134 4.134 14 N -0.501 5.501 15 Si 0.747 3.253 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.199 1.199 19 C -0.254 4.254 20 C 0.377 3.623 21 N -0.412 5.412 22 O -0.412 6.412 23 C -0.062 4.062 24 C -0.151 4.151 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.253 0.747 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.232 0.768 35 H 0.232 0.768 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.924 -14.259 16.757 22.087 hybrid contribution 1.532 3.101 2.566 4.306 sum -0.392 -11.158 19.323 22.317 Atomic orbital electron populations 1.21785 0.94657 1.01627 1.02585 1.19966 0.95914 0.89713 1.02752 1.24675 1.12054 1.02256 0.98663 1.84430 1.60294 0.96776 1.01559 1.21912 1.03627 0.94519 0.95948 1.43066 1.64472 1.12604 1.08110 1.20902 0.76785 0.90815 0.80189 1.90632 1.45127 1.41082 1.58053 1.23525 1.04431 0.95114 1.07177 1.85412 1.87310 1.20471 0.89157 1.22803 1.52015 0.98994 0.94950 0.90773 1.24996 0.94815 0.98434 0.95198 1.69999 1.44926 1.34818 1.00389 0.86191 0.79293 0.82328 0.77530 1.19872 1.20719 1.19853 1.19368 1.18470 0.97034 0.90490 1.17530 0.82066 0.81984 0.80719 1.43953 1.11573 1.41296 1.44425 1.90877 1.48539 1.42317 1.59444 1.19082 1.00736 0.90366 0.95980 1.20465 1.02255 1.00770 0.91595 0.92312 0.92326 0.92449 0.90992 0.90468 0.74723 0.88284 0.88339 0.91966 0.76779 0.76755 0.91060 0.91058 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.04 -0.38 6.08 -27.88 -0.17 -0.55 16 3 C -0.26 -2.92 5.68 -36.22 -0.21 -3.13 16 4 S 0.30 4.21 19.93 -107.50 -2.14 2.07 16 5 C 0.06 0.83 6.98 -14.88 -0.10 0.73 16 6 N -0.64 -9.16 5.37 -11.63 -0.06 -9.23 16 7 C 0.53 9.28 7.81 -10.99 -0.09 9.20 16 8 O -0.48 -9.67 13.29 5.55 0.07 -9.60 16 9 C -0.15 -2.88 6.16 36.00 0.22 -2.66 16 10 S -0.05 -1.28 20.57 -107.50 -2.21 -3.49 16 11 C -0.54 -14.83 9.50 30.94 0.29 -14.53 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.08 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -25.39 13.22 55.49 0.73 -24.66 16 15 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 C -0.23 -3.00 5.75 -104.41 -0.60 -3.60 16 20 C 0.59 7.38 6.36 -12.88 -0.08 7.30 16 21 N -0.85 -6.68 8.87 30.25 0.27 -6.41 16 22 O -0.54 -8.79 17.95 5.18 0.09 -8.70 16 23 C -0.05 -0.58 6.00 -104.00 -0.62 -1.20 16 24 C -0.09 -0.81 9.67 36.01 0.35 -0.47 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.54 6.63 -51.93 -0.34 0.20 16 30 H 0.42 5.08 8.16 -40.82 -0.33 4.75 16 31 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 32 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.40 2.50 8.93 -40.82 -0.36 2.14 16 35 H 0.40 2.36 8.81 -40.82 -0.36 2.00 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.49 6.63 -51.93 -0.34 0.15 16 38 H 0.06 0.51 7.69 -51.93 -0.40 0.11 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -34.48 355.41 -8.30 -42.78 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.65 Total: 3.77 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.74 Total: -7.77 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.94 Total: -40.29 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.17 Total: -18.30 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -4.35 Total: -1.42 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.48 -8.30 -42.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770711571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.263 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds