Wall clock time and date at job start Tue Mar 31 2020 14:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46910 * 2 1 4 4 S 1.75470 * 124.59701 * 269.97848 * 3 2 1 5 5 C 1.70445 * 92.52912 * 179.97438 * 4 3 2 6 6 N 1.38656 * 124.65269 * 179.97438 * 5 4 3 7 7 C 1.34774 * 120.00405 * 0.02562 * 6 5 4 8 8 O 1.21283 * 119.99885 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00481 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.47411 * 180.02562 * 9 7 6 11 11 C 1.76204 * 100.00154 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99657 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00274 * 179.97438 * 11 10 9 14 14 N 1.31639 * 119.99427 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00279 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46588 * 60.00403 * 15 13 11 17 17 H 1.48496 * 109.47011 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47227 * 300.00617 * 15 13 11 19 19 C 1.37073 * 110.69207 * 359.97438 * 5 4 3 20 20 C 1.46616 * 123.59785 * 179.97438 * 19 5 4 21 21 N 1.34777 * 120.00281 * 270.02762 * 20 19 5 22 22 O 1.21712 * 119.99854 * 90.02185 * 20 19 5 23 23 C 1.32542 * 124.59881 * 90.27636 * 3 2 1 24 24 C 1.50707 * 123.41803 * 359.96578 * 23 3 2 25 25 H 1.09004 * 109.47279 * 60.00367 * 1 2 3 26 26 H 1.09004 * 109.47263 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47417 * 299.99965 * 1 2 3 28 28 H 1.09002 * 109.47204 * 240.00424 * 2 1 3 29 29 H 1.08992 * 109.47495 * 120.00033 * 2 1 3 30 30 H 0.97000 * 120.00407 * 180.02562 * 6 5 4 31 31 H 1.09006 * 109.47251 * 299.99914 * 9 7 6 32 32 H 1.09001 * 109.47322 * 59.99772 * 9 7 6 33 33 H 0.97005 * 119.99314 * 179.97438 * 14 13 11 34 34 H 0.97001 * 120.00485 * 180.02562 * 21 20 19 35 35 H 0.97005 * 119.99790 * 359.71972 * 21 20 19 36 36 H 1.09003 * 109.47064 * 270.26527 * 24 23 3 37 37 H 1.09004 * 109.46749 * 30.25688 * 24 23 3 38 38 H 1.08996 * 109.47188 * 150.25695 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 16 2.3648 2.3600 -1.4444 5 6 2.8452 3.7222 -0.5395 6 7 3.2701 4.9229 -1.0875 7 6 3.3234 5.0714 -2.4259 8 8 2.9994 4.1549 -3.1512 9 6 3.7858 6.3762 -3.0215 10 16 3.7459 6.2629 -4.8275 11 6 4.3166 7.8760 -5.2481 12 1 4.5662 8.5807 -4.4686 13 6 4.4463 8.2407 -6.5810 14 7 4.1425 7.3816 -7.5309 15 14 5.0507 9.9511 -7.0268 16 1 6.4094 10.1581 -6.4643 17 1 5.0998 10.0891 -8.5045 18 1 4.1229 10.9658 -6.4658 19 6 2.7538 3.4677 0.8043 20 6 3.0989 4.4458 1.8406 21 7 4.3580 4.5064 2.3176 22 8 2.2484 5.2031 2.2700 23 6 2.2880 2.1286 1.0910 24 6 2.1057 1.5948 2.4885 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.5289 5.6561 -0.5075 31 1 3.1258 7.1794 -2.6936 32 1 4.8037 6.5853 -2.6926 33 1 4.2328 7.6366 -8.4625 34 1 4.5863 5.1533 3.0034 35 1 5.0350 3.9002 1.9782 36 1 1.0915 1.8049 2.8282 37 1 2.2737 0.5178 2.4907 38 1 2.8198 2.0753 3.1571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770711571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:14 Heat of formation + Delta-G solvation = -87.454067 kcal Electronic energy + Delta-G solvation = -22588.076183 eV Core-core repulsion = 19067.554230 eV Total energy + Delta-G solvation = -3520.521953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.62728 -40.66693 -38.65798 -36.56213 -34.72107 -34.61254 -33.88616 -31.74257 -30.20377 -28.17721 -27.69908 -25.26441 -24.33901 -22.48508 -21.41411 -20.33491 -19.61726 -19.08866 -18.64393 -17.97353 -17.41544 -16.98056 -16.90226 -16.74701 -16.13194 -15.45487 -15.24906 -15.21867 -15.14599 -14.72733 -14.55781 -14.22792 -14.08504 -13.55131 -13.31812 -13.22109 -13.13683 -13.04843 -12.89020 -12.67598 -12.26639 -12.13921 -11.83514 -11.78255 -11.50416 -11.28405 -11.15343 -10.81984 -10.78081 -10.37214 -9.31237 -9.02271 -8.70796 -8.37894 -6.16453 -0.16491 0.30881 0.98270 1.10157 1.14304 1.40635 1.42735 1.45088 1.50207 1.52518 1.90531 2.22993 2.63840 2.96996 3.18258 3.65387 3.79730 3.95331 4.10459 4.13173 4.27646 4.36755 4.46717 4.49975 4.56312 4.70952 4.77839 4.91238 4.98782 5.09140 5.15157 5.34603 5.39675 5.44018 5.58271 5.77575 5.84319 6.16792 6.29824 6.64316 7.04020 7.20603 8.70845 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019437 B = 0.002929 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.224895 B = 9556.741156 C =10750.316802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C -0.239 4.239 4 S 0.255 5.745 5 C 0.032 3.968 6 N -0.622 5.622 7 C 0.529 3.471 8 O -0.509 6.509 9 C -0.129 4.129 10 S -0.130 6.130 11 C -0.551 4.551 12 H 0.084 0.916 13 C 0.017 3.983 14 N -0.909 5.909 15 Si 0.996 3.004 16 H -0.261 1.261 17 H -0.279 1.279 18 H -0.264 1.264 19 C -0.220 4.220 20 C 0.595 3.405 21 N -0.822 5.822 22 O -0.579 6.579 23 C -0.061 4.061 24 C -0.090 4.090 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.426 0.574 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.272 0.728 34 H 0.414 0.586 35 H 0.417 0.583 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 -13.003 22.167 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.356 4.356 4 S 0.521 5.479 5 C -0.185 4.185 6 N -0.268 5.268 7 C 0.317 3.683 8 O -0.385 6.385 9 C -0.280 4.280 10 S 0.097 5.903 11 C -0.698 4.698 12 H 0.102 0.898 13 C -0.189 4.189 14 N -0.545 5.545 15 Si 0.818 3.182 16 H -0.186 1.186 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.242 4.242 20 C 0.378 3.622 21 N -0.386 5.386 22 O -0.459 6.459 23 C -0.072 4.072 24 C -0.149 4.149 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.121 0.879 30 H 0.265 0.735 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.081 0.919 34 H 0.247 0.753 35 H 0.248 0.752 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.082 -14.370 19.321 24.103 hybrid contribution 1.266 2.991 1.975 3.801 sum 0.184 -11.379 21.295 24.146 Atomic orbital electron populations 1.21782 0.94277 1.02746 1.01754 1.20139 0.96140 0.88012 1.04239 1.24920 1.10702 1.03103 0.96878 1.84588 1.61159 0.98101 1.04096 1.21958 1.05799 0.94361 0.96382 1.42651 1.63967 1.13224 1.06917 1.20558 0.76754 0.89890 0.81144 1.90641 1.46716 1.41882 1.59219 1.23324 1.06368 0.96556 1.01735 1.85529 1.87662 1.21114 0.96008 1.23173 1.51721 0.99321 0.95628 0.89780 1.26083 0.94800 1.02893 0.95082 1.70158 1.46371 1.37193 1.00788 0.85031 0.79162 0.76725 0.77278 1.18584 1.20381 1.18864 1.19685 1.16731 0.97681 0.90056 1.17483 0.82863 0.81370 0.80499 1.43715 1.10246 1.41054 1.43585 1.90869 1.50088 1.43954 1.61017 1.19439 1.00569 0.89732 0.97447 1.20543 1.02409 1.02260 0.89643 0.93898 0.90270 0.92550 0.90481 0.87922 0.73504 0.86729 0.86036 0.91880 0.75337 0.75191 0.91083 0.88637 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.89 71.98 0.71 -1.43 16 2 C -0.05 -0.69 6.08 29.85 0.18 -0.50 16 3 C -0.24 -5.04 5.68 24.54 0.14 -4.90 16 4 S 0.25 7.15 19.93 -56.49 -1.13 6.02 16 5 C 0.03 0.90 6.98 83.34 0.58 1.49 16 6 N -0.62 -17.60 5.37 -309.09 -1.66 -19.26 16 7 C 0.53 18.85 7.81 87.66 0.68 19.53 16 8 O -0.51 -21.41 13.29 -3.04 -0.04 -21.45 16 9 C -0.13 -4.85 6.16 71.23 0.44 -4.42 16 10 S -0.13 -6.89 20.57 -56.49 -1.16 -8.05 16 11 C -0.55 -30.46 9.50 67.95 0.65 -29.81 16 12 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 13 C 0.02 0.93 5.49 84.86 0.47 1.39 16 14 N -0.91 -54.47 13.22 21.65 0.29 -54.19 16 15 Si 1.00 42.66 29.55 68.60 2.03 44.69 16 16 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 17 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 19 C -0.22 -5.39 5.75 -19.73 -0.11 -5.50 16 20 C 0.60 13.78 6.36 86.43 0.55 14.33 16 21 N -0.82 -10.87 8.87 -176.42 -1.56 -12.44 16 22 O -0.58 -18.39 17.95 -4.39 -0.08 -18.47 16 23 C -0.06 -1.28 6.00 -19.37 -0.12 -1.40 16 24 C -0.09 -1.32 9.67 71.24 0.69 -0.63 16 25 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.10 1.05 6.63 -2.39 -0.02 1.03 16 30 H 0.43 9.93 8.16 -92.71 -0.76 9.17 16 31 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 32 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 33 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 34 H 0.41 4.04 8.93 -92.71 -0.83 3.21 16 35 H 0.42 3.68 8.81 -92.70 -0.82 2.86 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 0.93 6.63 -2.38 -0.02 0.92 16 38 H 0.07 0.91 7.69 -2.39 -0.02 0.89 16 Total: -1.00 -77.00 355.41 0.28 -76.72 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -1.26 Total: 18.28 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 4.86 Total: -11.86 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.94 Total: -85.89 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.12 Total: -39.92 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -2.29 Total: -2.03 kcal Total: -77.00 0.28 -76.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770711571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.734 kcal (2) G-P(sol) polarization free energy of solvation -77.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds