Wall clock time and date at job start Tue Mar 31 2020 14:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86797 * 119.99922 * 2 1 4 4 H 1.48498 * 109.46771 * 269.99765 * 3 2 1 5 5 H 1.48500 * 109.47452 * 29.99376 * 3 2 1 6 6 H 1.48498 * 109.47289 * 149.99705 * 3 2 1 7 7 C 1.39917 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99934 * 193.69902 * 7 2 1 9 9 C 1.41174 * 120.00048 * 13.69651 * 7 2 1 10 10 C 1.40856 * 120.17428 * 208.05627 * 9 7 2 11 11 C 1.36402 * 119.82206 * 179.97438 * 10 9 7 12 12 C 1.39408 * 120.17572 * 359.97438 * 11 10 9 13 13 N 1.39599 * 119.82410 * 180.02562 * 12 11 10 14 14 C 1.33789 * 124.17920 * 173.87174 * 13 12 11 15 15 O 1.21536 * 123.76886 * 359.95220 * 14 13 12 16 16 N 1.34860 * 112.50176 * 180.02562 * 14 13 12 17 17 C 1.47309 * 106.44144 * 359.85981 * 16 14 13 18 18 H 1.09005 * 110.59841 * 118.73279 * 17 16 14 19 19 C 1.50698 * 110.60216 * 241.52542 * 17 16 14 20 20 C 1.33385 * 125.20314 * 216.47022 * 19 17 16 21 21 C 1.38429 * 114.92182 * 179.97438 * 20 19 17 22 22 C 1.33388 * 114.92164 * 0.02562 * 21 20 19 23 23 S 1.75880 * 125.20224 * 36.44216 * 19 17 16 24 24 C 1.34773 * 124.17834 * 353.82503 * 13 12 11 25 25 O 1.21231 * 127.15440 * 0.08102 * 24 13 12 26 26 C 1.39396 * 120.34799 * 0.27697 * 12 11 10 27 27 C 1.36413 * 120.17613 * 359.44291 * 26 12 11 28 28 H 0.96994 * 119.99661 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.08471 * 359.95268 * 10 9 7 30 30 H 1.08003 * 119.91099 * 180.02562 * 11 10 9 31 31 H 0.97001 * 126.86952 * 179.97438 * 16 14 13 32 32 H 1.07997 * 122.54360 * 0.24715 * 20 19 17 33 33 H 1.08002 * 122.54078 * 180.02562 * 21 20 19 34 34 H 1.07992 * 125.20731 * 180.02562 * 22 21 20 35 35 H 1.07998 * 119.91346 * 179.72800 * 26 12 11 36 36 H 1.08005 * 120.08744 * 180.27249 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0463 -1.4001 5 1 1.4401 2.6527 0.6999 6 1 3.5402 1.4402 0.7001 7 6 2.0083 -1.2117 0.0005 8 1 3.0652 -1.2249 0.2220 9 6 1.3326 -2.4171 -0.2884 10 6 1.7936 -3.6340 0.2506 11 6 1.1349 -4.7943 -0.0328 12 6 0.0079 -4.7778 -0.8532 13 7 -0.6609 -5.9696 -1.1380 14 6 -1.8131 -6.0418 -1.8144 15 8 -2.4009 -5.0726 -2.2527 16 7 -2.2508 -7.3096 -1.9544 17 6 -1.2574 -8.1696 -1.2884 18 1 -1.7155 -8.7183 -0.4654 19 6 -0.6333 -9.1218 -2.2758 20 6 -0.2824 -10.3815 -2.0129 21 6 0.2738 -11.0668 -3.0793 22 6 0.3750 -10.3634 -4.2081 23 16 -0.2570 -8.7421 -3.9514 24 6 -0.2254 -7.1897 -0.7665 25 8 0.7821 -7.4494 -0.1443 26 6 -0.4516 -3.5784 -1.3947 27 6 0.1928 -2.4088 -1.1160 28 1 -0.4849 0.8400 -0.0004 29 1 2.6666 -3.6483 0.8864 30 1 1.4870 -5.7281 0.3800 31 1 -3.0588 -7.5998 -2.4058 32 1 -0.4255 -10.8340 -1.0428 33 1 0.6010 -12.0932 -3.0031 34 1 0.7816 -10.7331 -5.1377 35 1 -1.3228 -3.5743 -2.0329 36 1 -0.1670 -1.4797 -1.5328 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771828827.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:20 Heat of formation + Delta-G solvation = 32.597407 kcal Electronic energy + Delta-G solvation = -24524.454204 eV Core-core repulsion = 20873.694123 eV Total energy + Delta-G solvation = -3650.760081 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39791 -38.51209 -38.15545 -37.47131 -35.96217 -34.73839 -33.13371 -30.65368 -29.58176 -29.25806 -26.88590 -25.46069 -23.85465 -22.84990 -22.06285 -20.45218 -19.99000 -19.64367 -18.23271 -17.58138 -17.25982 -16.68241 -16.23448 -15.74850 -15.45449 -15.29043 -15.18072 -14.19952 -14.11250 -13.88946 -13.42691 -13.17957 -13.11826 -12.89234 -12.68845 -12.33328 -12.20398 -11.95327 -11.72974 -11.29224 -11.14757 -10.97157 -10.82709 -10.47976 -10.31162 -9.94950 -9.67995 -9.60744 -9.18074 -9.01576 -8.86531 -8.69228 -7.59961 -7.14894 -6.78870 -4.38849 0.62735 1.32322 1.71285 1.77074 2.34998 2.51853 2.66485 3.02362 3.05288 3.08199 3.09674 3.15803 3.55498 3.90371 4.08047 4.30950 4.61396 4.76715 4.81039 5.16657 5.29162 5.40746 5.64400 5.76863 5.96207 6.03378 6.15438 6.35679 6.39383 6.69398 6.86096 6.99187 7.08789 7.17417 7.44430 7.55198 7.62482 7.80675 7.99604 8.04311 8.21715 8.41600 8.57210 8.82141 8.90208 10.14607 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.025396 B = 0.003023 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.260105 B = 9259.930791 C = 9535.936177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.454 4.454 8 H 0.080 0.920 9 C 0.111 3.889 10 C -0.214 4.214 11 C -0.094 4.094 12 C -0.030 4.030 13 N -0.482 5.482 14 C 0.697 3.303 15 O -0.523 6.523 16 N -0.731 5.731 17 C 0.170 3.830 18 H 0.140 0.860 19 C -0.201 4.201 20 C -0.106 4.106 21 C -0.139 4.139 22 C -0.209 4.209 23 S 0.137 5.863 24 C 0.516 3.484 25 O -0.456 6.456 26 C -0.103 4.103 27 C -0.152 4.152 28 H 0.282 0.718 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.439 0.561 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.166 0.834 35 H 0.130 0.870 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.595 -18.278 -5.751 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.108 3.892 10 C -0.234 4.234 11 C -0.114 4.114 12 C -0.119 4.119 13 N -0.218 5.218 14 C 0.399 3.601 15 O -0.396 6.396 16 N -0.397 5.397 17 C 0.058 3.942 18 H 0.157 0.843 19 C -0.319 4.319 20 C -0.138 4.138 21 C -0.169 4.169 22 C -0.345 4.345 23 S 0.402 5.598 24 C 0.302 3.698 25 O -0.326 6.326 26 C -0.122 4.122 27 C -0.172 4.172 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.138 0.862 31 H 0.284 0.716 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.184 0.816 35 H 0.148 0.852 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.678 -16.333 -6.529 17.970 hybrid contribution 0.127 -0.755 0.749 1.071 sum -3.552 -17.088 -5.780 18.385 Atomic orbital electron populations 1.69826 1.07540 1.29441 1.34631 1.25969 0.94840 1.01461 0.92304 0.86234 0.80374 0.80313 0.79359 1.19212 1.20242 1.18563 1.19624 0.96879 0.90750 1.41098 0.90149 1.17791 0.91196 0.92229 0.87946 1.20644 1.03628 0.92578 1.06510 1.20575 0.94246 0.99066 0.97474 1.17256 1.00158 0.82174 1.12285 1.43220 1.21377 1.08551 1.48665 1.15975 0.80758 0.84002 0.79345 1.90897 1.59599 1.36628 1.52478 1.45695 1.26857 1.05301 1.61858 1.20251 0.88741 0.90978 0.94222 0.84294 1.24179 1.10743 0.98510 0.98502 1.20114 1.00179 0.92760 1.00760 1.20144 1.02968 1.01704 0.92101 1.25808 1.07962 0.97518 1.03260 1.84704 1.58262 1.12060 1.04780 1.20466 0.86279 0.83142 0.79938 1.90692 1.23879 1.81103 1.36915 1.20994 1.00352 0.90938 0.99948 1.20999 0.98843 0.96361 1.00997 0.90658 0.88150 0.86167 0.71645 0.83647 0.83925 0.81624 0.85211 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.44 10.94 55.55 0.61 -19.83 16 2 C 0.07 1.81 5.20 -17.33 -0.09 1.72 16 3 Si 0.91 18.57 29.58 -169.99 -5.03 13.54 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.45 -11.98 9.04 -37.84 -0.34 -12.32 16 8 H 0.08 2.02 7.88 -52.49 -0.41 1.61 16 9 C 0.11 2.99 5.55 -106.80 -0.59 2.40 16 10 C -0.21 -5.36 9.74 -39.25 -0.38 -5.74 16 11 C -0.09 -2.25 9.24 -39.81 -0.37 -2.62 16 12 C -0.03 -0.70 6.57 -83.46 -0.55 -1.25 16 13 N -0.48 -9.48 2.81 -64.11 -0.18 -9.66 16 14 C 0.70 12.43 8.54 -87.72 -0.75 11.68 16 15 O -0.52 -10.95 14.62 5.33 0.08 -10.87 16 16 N -0.73 -8.95 6.02 -60.24 -0.36 -9.31 16 17 C 0.17 2.00 4.12 -69.36 -0.29 1.72 16 18 H 0.14 1.18 8.14 -51.93 -0.42 0.75 16 19 C -0.20 -2.21 5.57 -36.01 -0.20 -2.41 16 20 C -0.11 -0.98 10.05 -41.21 -0.41 -1.39 16 21 C -0.14 -1.16 10.18 -41.21 -0.42 -1.58 16 22 C -0.21 -1.85 11.23 29.04 0.33 -1.52 16 23 S 0.14 1.54 23.06 -107.50 -2.48 -0.94 16 24 C 0.52 8.79 7.49 -10.55 -0.08 8.71 16 25 O -0.46 -8.70 15.02 5.60 0.08 -8.62 16 26 C -0.10 -2.58 9.18 -39.81 -0.37 -2.95 16 27 C -0.15 -4.06 8.61 -39.25 -0.34 -4.39 16 28 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 29 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.12 2.74 5.32 -52.48 -0.28 2.46 16 31 H 0.44 3.98 8.96 -40.82 -0.37 3.62 16 32 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.13 3.23 5.14 -52.49 -0.27 2.96 16 36 H 0.12 3.37 6.26 -52.48 -0.33 3.05 16 LS Contribution 325.92 15.07 4.91 4.91 Total: -1.00 -31.19 325.92 -10.12 -41.31 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -2.91 Total: 9.42 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -4.85 Total: -9.95 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.07 Total: -38.80 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.16 Total: -19.49 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.48 Total: -0.94 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.19 -10.12 -41.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771828827.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.909 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds