Wall clock time and date at job start Tue Mar 31 2020 14:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86797 * 119.99922 * 2 1 4 4 H 1.48498 * 109.46771 * 269.99765 * 3 2 1 5 5 H 1.48500 * 109.47452 * 29.99376 * 3 2 1 6 6 H 1.48498 * 109.47289 * 149.99705 * 3 2 1 7 7 C 1.39917 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99934 * 193.69902 * 7 2 1 9 9 C 1.41174 * 120.00048 * 13.69651 * 7 2 1 10 10 C 1.40856 * 120.17428 * 208.05627 * 9 7 2 11 11 C 1.36402 * 119.82206 * 179.97438 * 10 9 7 12 12 C 1.39408 * 120.17572 * 359.97438 * 11 10 9 13 13 N 1.39599 * 119.82410 * 180.02562 * 12 11 10 14 14 C 1.33789 * 124.17920 * 173.87174 * 13 12 11 15 15 O 1.21536 * 123.76886 * 359.95220 * 14 13 12 16 16 N 1.34860 * 112.50176 * 180.02562 * 14 13 12 17 17 C 1.47309 * 106.44144 * 359.85981 * 16 14 13 18 18 H 1.09005 * 110.59841 * 118.73279 * 17 16 14 19 19 C 1.50698 * 110.60216 * 241.52542 * 17 16 14 20 20 C 1.33385 * 125.20314 * 216.47022 * 19 17 16 21 21 C 1.38429 * 114.92182 * 179.97438 * 20 19 17 22 22 C 1.33388 * 114.92164 * 0.02562 * 21 20 19 23 23 S 1.75880 * 125.20224 * 36.44216 * 19 17 16 24 24 C 1.34773 * 124.17834 * 353.82503 * 13 12 11 25 25 O 1.21231 * 127.15440 * 0.08102 * 24 13 12 26 26 C 1.39396 * 120.34799 * 0.27697 * 12 11 10 27 27 C 1.36413 * 120.17613 * 359.44291 * 26 12 11 28 28 H 0.96994 * 119.99661 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.08471 * 359.95268 * 10 9 7 30 30 H 1.08003 * 119.91099 * 180.02562 * 11 10 9 31 31 H 0.97001 * 126.86952 * 179.97438 * 16 14 13 32 32 H 1.07997 * 122.54360 * 0.24715 * 20 19 17 33 33 H 1.08002 * 122.54078 * 180.02562 * 21 20 19 34 34 H 1.07992 * 125.20731 * 180.02562 * 22 21 20 35 35 H 1.07998 * 119.91346 * 179.72800 * 26 12 11 36 36 H 1.08005 * 120.08744 * 180.27249 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0463 -1.4001 5 1 1.4401 2.6527 0.6999 6 1 3.5402 1.4402 0.7001 7 6 2.0083 -1.2117 0.0005 8 1 3.0652 -1.2249 0.2220 9 6 1.3326 -2.4171 -0.2884 10 6 1.7936 -3.6340 0.2506 11 6 1.1349 -4.7943 -0.0328 12 6 0.0079 -4.7778 -0.8532 13 7 -0.6609 -5.9696 -1.1380 14 6 -1.8131 -6.0418 -1.8144 15 8 -2.4009 -5.0726 -2.2527 16 7 -2.2508 -7.3096 -1.9544 17 6 -1.2574 -8.1696 -1.2884 18 1 -1.7155 -8.7183 -0.4654 19 6 -0.6333 -9.1218 -2.2758 20 6 -0.2824 -10.3815 -2.0129 21 6 0.2738 -11.0668 -3.0793 22 6 0.3750 -10.3634 -4.2081 23 16 -0.2570 -8.7421 -3.9514 24 6 -0.2254 -7.1897 -0.7665 25 8 0.7821 -7.4494 -0.1443 26 6 -0.4516 -3.5784 -1.3947 27 6 0.1928 -2.4088 -1.1160 28 1 -0.4849 0.8400 -0.0004 29 1 2.6666 -3.6483 0.8864 30 1 1.4870 -5.7281 0.3800 31 1 -3.0588 -7.5998 -2.4058 32 1 -0.4255 -10.8340 -1.0428 33 1 0.6010 -12.0932 -3.0031 34 1 0.7816 -10.7331 -5.1377 35 1 -1.3228 -3.5743 -2.0329 36 1 -0.1670 -1.4797 -1.5328 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771828827.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:19 Heat of formation + Delta-G solvation = 13.571166 kcal Electronic energy + Delta-G solvation = -24525.279244 eV Core-core repulsion = 20873.694123 eV Total energy + Delta-G solvation = -3651.585121 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.78273 -39.88861 -39.62428 -38.70034 -37.34201 -36.35344 -34.86963 -31.72509 -31.39088 -31.11383 -28.01514 -27.13445 -24.94562 -24.24152 -23.64339 -22.18899 -21.56296 -20.41748 -19.56023 -19.22158 -18.61364 -18.01913 -17.67861 -17.18625 -16.86737 -16.59245 -16.33855 -15.88776 -15.42916 -15.21385 -15.10067 -14.58580 -14.33654 -14.13472 -13.85743 -13.80606 -13.56741 -13.53693 -13.02396 -12.98314 -12.83280 -12.63225 -12.06048 -12.03719 -11.72015 -11.67666 -11.33301 -11.02302 -10.80289 -10.73477 -9.74426 -9.59789 -9.49698 -9.07421 -8.66827 -6.38132 -0.14302 0.36137 0.56275 0.71300 1.03753 1.03973 1.19087 1.38703 1.45394 1.53178 1.80419 2.00200 2.02158 2.19892 2.71830 2.90792 3.36217 3.64027 3.82907 4.14415 4.22440 4.33557 4.46494 4.47806 4.57099 4.68658 4.97406 5.02175 5.11334 5.17732 5.24737 5.27694 5.51499 5.58661 5.64332 5.75460 5.81038 6.01208 6.21969 6.25250 6.33486 6.58761 6.84980 6.87599 7.05382 8.29469 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.025396 B = 0.003023 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.260105 B = 9259.930791 C = 9535.936177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.031 3.969 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.487 4.487 8 H 0.084 0.916 9 C 0.084 3.916 10 C -0.223 4.223 11 C -0.097 4.097 12 C -0.020 4.020 13 N -0.500 5.500 14 C 0.694 3.306 15 O -0.563 6.563 16 N -0.699 5.699 17 C 0.189 3.811 18 H 0.187 0.813 19 C -0.222 4.222 20 C -0.087 4.087 21 C -0.142 4.142 22 C -0.195 4.195 23 S 0.069 5.931 24 C 0.511 3.489 25 O -0.478 6.478 26 C -0.112 4.112 27 C -0.171 4.171 28 H 0.290 0.710 29 H 0.112 0.888 30 H 0.134 0.866 31 H 0.456 0.544 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.189 0.811 35 H 0.129 0.871 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.468 -21.044 -5.556 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.516 4.516 8 H 0.102 0.898 9 C 0.081 3.919 10 C -0.243 4.243 11 C -0.117 4.117 12 C -0.111 4.111 13 N -0.236 5.236 14 C 0.396 3.604 15 O -0.438 6.438 16 N -0.366 5.366 17 C 0.079 3.921 18 H 0.204 0.796 19 C -0.341 4.341 20 C -0.120 4.120 21 C -0.172 4.172 22 C -0.331 4.331 23 S 0.333 5.667 24 C 0.299 3.701 25 O -0.349 6.349 26 C -0.131 4.131 27 C -0.191 4.191 28 H 0.101 0.899 29 H 0.130 0.870 30 H 0.151 0.849 31 H 0.305 0.695 32 H 0.191 0.809 33 H 0.192 0.808 34 H 0.206 0.794 35 H 0.147 0.853 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.581 -19.190 -6.346 20.527 hybrid contribution 0.075 -0.175 0.647 0.674 sum -3.507 -19.365 -5.699 20.488 Atomic orbital electron populations 1.69890 1.09141 1.30854 1.35036 1.26886 0.95583 1.04840 0.91109 0.85083 0.78994 0.75352 0.79561 1.18657 1.19216 1.17859 1.19889 0.97249 0.91667 1.42818 0.89803 1.18086 0.91766 0.93368 0.88702 1.20855 1.04191 0.92593 1.06670 1.20740 0.94274 0.99190 0.97492 1.17286 0.99729 0.83467 1.10590 1.43347 1.22202 1.08328 1.49766 1.16097 0.80176 0.85212 0.78928 1.90862 1.60476 1.38433 1.54064 1.45497 1.27172 1.03187 1.60775 1.20339 0.86760 0.89460 0.95548 0.79591 1.24012 1.13299 0.99102 0.97647 1.20542 0.97564 0.91799 1.02047 1.20542 1.02234 1.03000 0.91395 1.26112 1.06898 0.95468 1.04596 1.84996 1.60092 1.15131 1.06450 1.21402 0.86776 0.83100 0.78820 1.90662 1.25108 1.81384 1.37760 1.21056 1.00378 0.91415 1.00289 1.20939 0.99762 0.96363 1.02004 0.89907 0.87008 0.84862 0.69499 0.80851 0.80836 0.79394 0.85331 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.11 10.94 21.82 0.24 -43.87 16 2 C 0.03 1.58 5.20 85.24 0.44 2.03 16 3 Si 0.99 38.45 29.58 68.60 2.03 40.48 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 7 C -0.49 -26.59 9.04 23.40 0.21 -26.37 16 8 H 0.08 4.34 7.88 -2.91 -0.02 4.32 16 9 C 0.08 4.69 5.55 -21.28 -0.12 4.57 16 10 C -0.22 -11.55 9.74 22.48 0.22 -11.33 16 11 C -0.10 -4.75 9.24 22.12 0.20 -4.54 16 12 C -0.02 -0.98 6.57 38.47 0.25 -0.73 16 13 N -0.50 -19.64 2.81 -594.01 -1.67 -21.32 16 14 C 0.69 24.63 8.54 179.34 1.53 26.16 16 15 O -0.56 -24.12 14.62 -3.83 -0.06 -24.17 16 16 N -0.70 -15.80 6.02 -462.74 -2.78 -18.58 16 17 C 0.19 3.90 4.12 43.62 0.18 4.08 16 18 H 0.19 2.21 8.14 -2.38 -0.02 2.19 16 19 C -0.22 -4.23 5.57 24.59 0.14 -4.09 16 20 C -0.09 -1.22 10.05 21.22 0.21 -1.01 16 21 C -0.14 -1.76 10.18 21.22 0.22 -1.54 16 22 C -0.20 -2.84 11.23 66.72 0.75 -2.09 16 23 S 0.07 1.46 23.06 -56.49 -1.30 0.16 16 24 C 0.51 16.68 7.49 87.94 0.66 17.34 16 25 O -0.48 -17.62 15.02 -2.88 -0.04 -17.66 16 26 C -0.11 -5.89 9.18 22.12 0.20 -5.68 16 27 C -0.17 -9.61 8.61 22.48 0.19 -9.42 16 28 H 0.29 14.02 8.30 -92.71 -0.77 13.26 16 29 H 0.11 5.36 8.06 -2.91 -0.02 5.34 16 30 H 0.13 6.10 5.32 -2.91 -0.02 6.08 16 31 H 0.46 7.24 8.96 -92.71 -0.83 6.41 16 32 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.13 6.75 5.14 -2.91 -0.01 6.74 16 36 H 0.11 6.27 6.26 -2.91 -0.02 6.25 16 Total: -1.00 -71.97 325.92 2.04 -69.93 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.34 Total: 27.66 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 5.29 Total: -12.62 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -4.22 Total: -83.77 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.10 Total: -41.83 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -1.30 Total: 0.16 kcal Total: -71.97 2.04 -69.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771828827.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.498 kcal (2) G-P(sol) polarization free energy of solvation -71.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds